Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:05:23 (2157052): wrapper (7.7.26015): starting
16:05:23 (2157052): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 16:05:23] Arguments: --nthreads 4
[2026-02-10 16:05:23] Threads: 4
[2026-02-10 16:05:23] Checking for CVMFS
[2026-02-10 16:05:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 16:05:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 16:05:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 16:05:24] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 16:05:24] 2.9.2.0 8228 6339 95916 156085 1 188 31796828 36864001 0 130560 0 2990484 99.986 219886 11682 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 16:05:24] CVMFS is ok
[2026-02-10 16:05:24] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 16:05:24] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 16:05:24] Further information can be found at the LHC@home message board.
[2026-02-10 16:05:24] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 16:05:24] Checking for apptainer binary...
[2026-02-10 16:05:24] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 16:05:24] Running /usr/bin/apptainer --version
[2026-02-10 16:05:24] apptainer version 1.4.1-1.1
[2026-02-10 16:05:24] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 16:05:24] atlasA237
[2026-02-10 16:05:24] apptainer works
[2026-02-10 16:05:24] Set ATHENA_PROC_NUMBER=4
[2026-02-10 16:05:24] Set ATHENA_CORE_NUMBER=4
[2026-02-10 16:05:24] Starting ATLAS job with PandaID=7006749039
[2026-02-10 16:05:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 17:21:08]  *** The last 200 lines of the pilot log: ***
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 17:21:08] 2026-02-10 16:20:37,133 | INFO     | job 7006749039 has completed (purged errors)
[2026-02-10 17:21:08] 2026-02-10 16:20:37,134 | INFO     | overall cleanup function is called
[2026-02-10 17:21:08] 2026-02-10 16:20:38,140 | INFO     | --- collectZombieJob: --- 10, [2165824]
[2026-02-10 17:21:08] 2026-02-10 16:20:38,140 | INFO     | zombie collector waiting for pid 2165824
[2026-02-10 17:21:08] 2026-02-10 16:20:38,140 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 17:21:08] 2026-02-10 16:20:38,140 | INFO     | collected zombie processes
[2026-02-10 17:21:08] 2026-02-10 16:20:38,140 | INFO     | will attempt to kill all subprocesses of pid=2165824
[2026-02-10 17:21:08] 2026-02-10 16:20:38,207 | INFO     | process IDs to be killed: [2165824] (in reverse order)
[2026-02-10 17:21:08] 2026-02-10 16:20:38,247 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 17:21:08] 2026-02-10 16:20:38,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 17:21:08] 2026-02-10 16:20:38,250 | INFO     | did not find any defunct processes belonging to 2165824
[2026-02-10 17:21:08] 2026-02-10 16:20:38,253 | INFO     | did not find any defunct processes belonging to 2165824
[2026-02-10 17:21:08] 2026-02-10 16:20:38,253 | INFO     | ready for new job
[2026-02-10 17:21:08] 2026-02-10 16:20:38,253 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | **************************************
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | **************************************
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | 
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | architecture information:
[2026-02-10 17:21:08] 2026-02-10 16:20:38,254 | INFO     | executing command: cat /etc/os-release
[2026-02-10 17:21:08] 2026-02-10 16:20:38,268 | INFO     | cat /etc/os-release:
[2026-02-10 17:21:08] NAME="CentOS Linux"
[2026-02-10 17:21:08] VERSION="7 (Core)"
[2026-02-10 17:21:08] ID="centos"
[2026-02-10 17:21:08] ID_LIKE="rhel fedora"
[2026-02-10 17:21:08] VERSION_ID="7"
[2026-02-10 17:21:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 17:21:08] ANSI_COLOR="0;31"
[2026-02-10 17:21:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 17:21:08] HOME_URL="https://www.centos.org/"
[2026-02-10 17:21:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 17:21:08] 
[2026-02-10 17:21:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 17:21:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 17:21:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 17:21:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 17:21:08] 
[2026-02-10 17:21:08] 2026-02-10 16:20:38,268 | INFO     | **************************************
[2026-02-10 17:21:08] 2026-02-10 16:20:38,771 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 17:21:08] 2026-02-10 16:20:38,785 | INFO     | sufficient remaining disk space (323187900416 B)
[2026-02-10 17:21:08] 2026-02-10 16:20:38,785 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 17:21:08] 2026-02-10 16:20:38,785 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 17:21:08] 2026-02-10 16:20:38,785 | INFO     | update_server=False
[2026-02-10 17:21:08] 2026-02-10 16:20:38,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 17:21:08] 2026-02-10 16:20:38,786 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 17:21:08] 2026-02-10 16:20:38,786 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 17:21:08] 2026-02-10 16:20:38,786 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 17:21:08] 2026-02-10 16:20:38,998 | INFO     | job.realtimelogging is not enabled
[2026-02-10 17:21:08] 2026-02-10 16:20:39,176 | INFO     | all payload control threads have been joined
[2026-02-10 17:21:08] 2026-02-10 16:20:39,277 | INFO     | all data control threads have been joined
[2026-02-10 17:21:08] 2026-02-10 16:20:39,510 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 17:21:08] 2026-02-10 16:20:39,511 | INFO     | aborting loop
[2026-02-10 17:21:08] 2026-02-10 16:20:39,790 | INFO     | [job] retrieve thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:39,791 | INFO     | [job] queue monitor thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:39,962 | INFO     | all job control threads have been joined
[2026-02-10 17:21:08] 2026-02-10 16:20:40,004 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,021 | INFO     | [payload] failed_post thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,181 | INFO     | [payload] control thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,281 | INFO     | [data] control thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,509 | INFO     | [job] validate thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,515 | INFO     | [job] job monitor thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,671 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,694 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,695 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,790 | INFO     | [data] copytool_out thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,929 | INFO     | [data] copytool_in thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:40,968 | INFO     | [job] control thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:41,110 | INFO     | [payload] validate_post thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:42,034 | INFO     | [monitor] cgroup control has ended
[2026-02-10 17:21:08] 2026-02-10 16:20:42,791 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 17:21:08] 2026-02-10 16:20:43,078 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140301608658752)>', '<ExcThread(monitor, started 140300634793728)>']
[2026-02-10 17:21:08] 2026-02-10 16:20:48,103 | INFO     | all workflow threads have been joined
[2026-02-10 17:21:08] 2026-02-10 16:20:48,103 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 17:21:08] 2026-02-10 16:20:48,103 | INFO     | traces error code: 0
[2026-02-10 17:21:08] 2026-02-10 16:20:48,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 17:21:08] 2026-02-10 16:21:08,362 | INFO     | PID=2161195 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 17:21:08] 2026-02-10 16:21:08,363 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 17:21:08] 2026-02-10 16:21:08,363 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 17:21:08] 2026-02-10 16:21:08,363 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 17:21:08] 2026-02-10 16:21:08,363 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 17:21:08] 2026-02-10 16:21:08,363 | INFO     | [monitor] control thread has ended
[2026-02-10 17:21:08] 2026-02-10 16:21:08,429 [wrapper] ==== pilot stdout END ====
[2026-02-10 17:21:08] 2026-02-10 16:21:08,433 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 17:21:08] 2026-02-10 16:21:08,437 [wrapper] pilotpid: 2161195
[2026-02-10 17:21:08] 2026-02-10 16:21:08,440 [wrapper] Pilot exit status: 0
[2026-02-10 17:21:08] 2026-02-10 16:21:08,451 [wrapper] pandaids: 7006749039
[2026-02-10 17:21:08] 2026-02-10 16:21:08,477 [wrapper] cleanup supervisor_pilot 2195078 2161196
[2026-02-10 17:21:08] 2026-02-10 16:21:08,480 [wrapper] Test setup, not cleaning
[2026-02-10 17:21:08] 2026-02-10 16:21:08,484 [wrapper] apfmon messages muted
[2026-02-10 17:21:08] 2026-02-10 16:21:08,488 [wrapper] ==== wrapper stdout END ====
[2026-02-10 17:21:08] 2026-02-10 16:21:08,491 [wrapper] ==== wrapper stderr END ====
[2026-02-10 17:21:08]  *** Error codes and diagnostics ***
[2026-02-10 17:21:08]     "exeErrorCode": 0,
[2026-02-10 17:21:08]     "exeErrorDiag": "",
[2026-02-10 17:21:08]     "pilotErrorCode": 0,
[2026-02-10 17:21:08]     "pilotErrorDiag": "",
[2026-02-10 17:21:08]  *** Listing of results directory ***
[2026-02-10 17:21:08] total 671196
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc    584627 Feb  9 16:31 pilot3.tar.gz
[2026-02-10 17:21:08] -rwx------ 1 boinc boinc     36322 Feb  9 16:35 runpilot2-wrapper.sh
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc      5111 Feb  9 16:38 queuedata.json
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc       100 Feb 10 16:05 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 17:21:08] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 16:05 run_atlas
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc       105 Feb 10 16:05 job.xml
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc 496409900 Feb 10 16:05 EVNT.48318008._000289.pool.root.1
[2026-02-10 17:21:08] drwxrwx--x 2 boinc boinc      4096 Feb 10 16:05 shared
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc    597949 Feb 10 16:05 input.tar.gz
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc     15845 Feb 10 16:05 start_atlas.sh
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc         0 Feb 10 16:05 boinc_setup_complete
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc      6371 Feb 10 16:05 init_data.xml
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc         0 Feb 10 16:05 boinc_lockfile
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc      2528 Feb 10 16:05 pandaJob.out
[2026-02-10 17:21:08] -rw------- 1 boinc boinc   1009464 Feb 10 16:05 agis_schedconf.cvmfs.json
[2026-02-10 17:21:08] -rw------- 1 boinc boinc   1512955 Feb 10 16:05 agis_ddmendpoints.agis.ALL.json
[2026-02-10 17:21:08] -rw------- 1 boinc boinc       430 Feb 10 16:05 workernode_map.json
[2026-02-10 17:21:08] drwx------ 5 boinc boinc      4096 Feb 10 16:05 pilot3
[2026-02-10 17:21:08] -rw------- 1 boinc boinc 185079191 Feb 10 17:20 HITS.48318010._015957.pool.root.1
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc       530 Feb 10 17:20 boinc_task_state.xml
[2026-02-10 17:21:08] -rw------- 1 boinc boinc      1026 Feb 10 17:20 memory_monitor_summary.json
[2026-02-10 17:21:08] -rw------- 1 boinc boinc    286412 Feb 10 17:20 log.48318010._015957.job.log.tgz.1
[2026-02-10 17:21:08] -rw------- 1 boinc boinc      6327 Feb 10 17:20 heartbeat.json
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc        27 Feb 10 17:20 wrapper_checkpoint.txt
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc      8192 Feb 10 17:20 boinc_mmap_file
[2026-02-10 17:21:08] -rw------- 1 boinc boinc       747 Feb 10 17:21 pilotlog.txt
[2026-02-10 17:21:08] -rw------- 1 boinc boinc        95 Feb 10 17:21 pilot_heartbeat.json
[2026-02-10 17:21:08] -rw------- 1 boinc boinc    662332 Feb 10 17:21 log.48318010._015957.job.log.1
[2026-02-10 17:21:08] -rw------- 1 boinc boinc       357 Feb 10 17:21 output.list
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc       620 Feb 10 17:21 runtime_log
[2026-02-10 17:21:08] -rw------- 1 boinc boinc    962560 Feb 10 17:21 result.tar.gz
[2026-02-10 17:21:08] -rw------- 1 boinc boinc       660 Feb 10 17:21 L3MNDm6Si98n9Rq4apOajLDm4fhM0noT9bVooX4SDmscfKDmUoA85n.diag
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc      8911 Feb 10 17:21 runtime_log.err
[2026-02-10 17:21:08] -rw-r--r-- 1 boinc boinc     12233 Feb 10 17:21 stderr.txt
[2026-02-10 17:21:08] HITS file was successfully produced:
[2026-02-10 17:21:08] -rw------- 1 boinc boinc 185079191 Feb 10 17:20 shared/HITS.pool.root.1
[2026-02-10 17:21:08]  *** Contents of shared directory: ***
[2026-02-10 17:21:08] total 667068
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc 496409900 Feb 10 16:05 ATLAS.root_0
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc    597949 Feb 10 16:05 input.tar.gz
[2026-02-10 17:21:08] -rw-r--r-- 2 boinc boinc     15845 Feb 10 16:05 start_atlas.sh
[2026-02-10 17:21:08] -rw------- 1 boinc boinc 185079191 Feb 10 17:20 HITS.pool.root.1
[2026-02-10 17:21:08] -rw------- 1 boinc boinc    962560 Feb 10 17:21 result.tar.gz
17:21:10 (2157052): run_atlas exited; CPU time 16797.578915
17:21:10 (2157052): called boinc_finish(0)

</stderr_txt>
]]>

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