Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
03:06:04 (3228): wrapper (7.7.26015): starting
03:06:04 (3228): wrapper: running run_atlas (--nthreads 8)
[2026-02-10 03:06:04] Arguments: --nthreads 8
[2026-02-10 03:06:04] Threads: 8
[2026-02-10 03:06:04] Checking for CVMFS
[2026-02-10 03:06:04] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 03:06:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 03:06:05] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 03:06:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 03:06:05] 2.11.0.0 4551 97491 70092 156071 2 188 3667515 4096001 917 130560 1 8086928 99.678 6681758 503 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-10 03:06:05] CVMFS is ok
[2026-02-10 03:06:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 03:06:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 03:06:05] Further information can be found at the LHC@home message board.
[2026-02-10 03:06:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 03:06:05] Checking for apptainer binary...
[2026-02-10 03:06:05] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-10 03:06:05] apptainer is not installed, using version from CVMFS
[2026-02-10 03:06:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 03:06:05] WARNING: Environment variable TMPDIR already has value [/tmp/job_11085212/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node398
[2026-02-10 03:06:05] apptainer works
[2026-02-10 03:06:05] Set ATHENA_PROC_NUMBER=8
[2026-02-10 03:06:05] Set ATHENA_CORE_NUMBER=8
[2026-02-10 03:06:05] Starting ATLAS job with PandaID=7006747762
[2026-02-10 03:06:05] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11085212/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 04:00:44]  *** The last 200 lines of the pilot log: ***
[2026-02-10 04:00:44]  lfn=log.48318010._015685.job.log.tgz.1
[2026-02-10 04:00:44]  mtime=0
[2026-02-10 04:00:44]  protocol_id=None
[2026-02-10 04:00:44]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-10 04:00:44]  replicas=None
[2026-02-10 04:00:44]  scope=mc23_13p6TeV
[2026-02-10 04:00:44]  status=None
[2026-02-10 04:00:44]  status_code=0
[2026-02-10 04:00:44]  storage_token=
[2026-02-10 04:00:44]  surl=/tmp/job_11085212/atlas/pilot/slots/0/PanDA_Pilot-7006747762/log.48318010._015685.job.log.tgz.1
[2026-02-10 04:00:44]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/5c/log.48318010._015685.job.log.tgz.1
[2026-02-10 04:00:44]  workdir=None
[2026-02-10 04:00:44] ]
[2026-02-10 04:00:44] 2026-02-10 03:00:08,048 | INFO     | transferring file log.48318010._015685.job.log.tgz.1 from /tmp/job_11085212/atlas/pilot/slots/0/PanDA_Pilot-7006747762/log.48318010._015685.job.log.tgz.1 to /tmp/j
[2026-02-10 04:00:44] 2026-02-10 03:00:08,048 | INFO     | executing command: /usr/bin/env mv /tmp/job_11085212/atlas/pilot/slots/0/PanDA_Pilot-7006747762/log.48318010._015685.job.log.tgz.1 /tmp/job_11085212/atlas/pilot/sl
[2026-02-10 04:00:44] 2026-02-10 03:00:08,056 | INFO     | adding to output.list: log.48318010._015685.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/5c/log.48318010._015685.job.log.tg
[2026-02-10 04:00:44] 2026-02-10 03:00:08,056 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-10 04:00:44] 2026-02-10 03:00:08,056 | INFO     | summary of transferred files:
[2026-02-10 04:00:44] 2026-02-10 03:00:08,056 | INFO     |  -- lfn=log.48318010._015685.job.log.tgz.1, status_code=0, status=transferred
[2026-02-10 04:00:44] 2026-02-10 03:00:08,056 | INFO     | stage-out finished correctly
[2026-02-10 04:00:44] 2026-02-10 03:00:09,338 | INFO     | time since job start (3235s) is within the limit (349056.0s)
[2026-02-10 04:00:44] 2026-02-10 03:00:10,540 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-10 04:00:44] 2026-02-10 03:00:10,587 | INFO     | job 7006747762 has state=finished
[2026-02-10 04:00:44] 2026-02-10 03:00:10,587 | INFO     | preparing for final server update for job 7006747762 in state='finished'
[2026-02-10 04:00:44] 2026-02-10 03:00:11,142 | INFO     | sent prmon JSON dictionary to logstash server (urllib method)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,142 | INFO     | reading metadata from: /tmp/job_11085212/atlas/pilot/slots/0/PanDA_Pilot-7006747762/jobReport.json
[2026-02-10 04:00:44] 2026-02-10 03:00:11,143 | INFO     | added worker_node to metadata from /tmp/job_11085212/atlas/pilot/slots/0/workernode_map.json
[2026-02-10 04:00:44] 2026-02-10 03:00:11,144 | INFO     | this job has now completed (state=finished)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,144 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,144 | INFO     | log transfer has been attempted: DONE
[2026-02-10 04:00:44] 2026-02-10 03:00:11,144 | INFO     | job 7006747762 has finished - writing final server update
[2026-02-10 04:00:44] 2026-02-10 03:00:11,144 | INFO     | total number of processed events: 400 (read)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | INFO     | using path: /tmp/job_11085212/atlas/pilot/slots/0/PanDA_Pilot-7006747762/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | INFO     | extracted standard info from prmon json
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | INFO     | extracted standard memory fields from prmon json
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-10 04:00:44] 2026-02-10 03:00:11,162 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | fitting pss+swap vs Time
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | sum of square deviations: 30168007.5
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | sum of deviations: -550619397.4999999
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | mean x: 1770690867.5
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | mean y: 2567580.282608696
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | intersect: 32320802008.64524
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | chi2: 0.01963625854949615
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | current memory leak: -18.25 B/s (using 46 data points, chi2=0.02)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | could have reported an average CPU frequency of 2490 MHz (5 samples)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | ..............................
[2026-02-10 04:00:44] 2026-02-10 03:00:11,163 | INFO     | . Timing measurements:
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . get job = 0 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . initial setup = 2 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . payload setup = 2 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . stage-in = 0 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . payload execution = 3216 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . stage-out = 0 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | . log creation = 0 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,164 | INFO     | ..............................
[2026-02-10 04:00:44] 2026-02-10 03:00:11,343 | INFO     | time since job start (3237s) is within the limit (349056.0s)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,494 | INFO     | 
[2026-02-10 04:00:44] 2026-02-10 03:00:11,494 | INFO     | job summary report
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | --------------------------------------------------
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | PanDA job id: 7006747762
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | task id: 48318010
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | errors: (none)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | pilot state: finished 
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | transexitcode: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | exeerrorcode: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | exeerrordiag: 
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | exitcode: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | exitmsg: OK
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | cpuconsumptiontime: 21056 s
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | nevents: 400
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | neventsw: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | pid: 11865
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | pgrp: 11865
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | corecount: 8
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | event service: False
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | sizes: {0: 2283164, 11: 2283164, 3222: 2308764, 3223: 2317792, 3225: 2317848, 3226: 2318074}
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | --------------------------------------------------
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | 
[2026-02-10 04:00:44] 2026-02-10 03:00:11,495 | INFO     | executing command: ls -lF /tmp/job_11085212/atlas/pilot/slots/0
[2026-02-10 04:00:44] 2026-02-10 03:00:11,505 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | job 7006747762 has completed (purged errors)
[2026-02-10 04:00:44] 2026-02-10 03:00:11,506 | INFO     | overall cleanup function is called
[2026-02-10 04:00:44] 2026-02-10 03:00:12,499 | WARNING  | process 11865 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 04:00:44] 2026-02-10 03:00:12,512 | INFO     | --- collectZombieJob: --- 10, [11865]
[2026-02-10 04:00:44] 2026-02-10 03:00:12,512 | INFO     | zombie collector waiting for pid 11865
[2026-02-10 04:00:44] 2026-02-10 03:00:12,512 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 04:00:44] 2026-02-10 03:00:12,512 | INFO     | collected zombie processes
[2026-02-10 04:00:44] 2026-02-10 03:00:12,513 | INFO     | will attempt to kill all subprocesses of pid=11865
[2026-02-10 04:00:44] 2026-02-10 03:00:12,714 | INFO     | using path: /tmp/job_11085212/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 04:00:44] 2026-02-10 03:00:12,811 | INFO     | process IDs to be killed: [11865] (in reverse order)
[2026-02-10 04:00:44] 2026-02-10 03:00:12,843 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 04:00:44] 2026-02-10 03:00:12,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 04:00:44] 2026-02-10 03:00:12,851 | INFO     | did not find any defunct processes belonging to 11865
[2026-02-10 04:00:44] 2026-02-10 03:00:12,857 | INFO     | did not find any defunct processes belonging to 11865
[2026-02-10 04:00:44] 2026-02-10 03:00:12,857 | INFO     | ready for new job
[2026-02-10 04:00:44] 2026-02-10 03:00:12,857 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 04:00:44] 2026-02-10 03:00:12,858 | INFO     | **************************************
[2026-02-10 04:00:44] 2026-02-10 03:00:12,858 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 04:00:44] 2026-02-10 03:00:12,858 | INFO     | **************************************
[2026-02-10 04:00:44] 2026-02-10 03:00:12,858 | INFO     | 
[2026-02-10 04:00:44] 2026-02-10 03:00:12,872 | INFO     | architecture information:
[2026-02-10 04:00:44] 2026-02-10 03:00:12,872 | INFO     | executing command: cat /etc/os-release
[2026-02-10 04:00:44] 2026-02-10 03:00:12,879 | INFO     | cat /etc/os-release:
[2026-02-10 04:00:44] NAME="CentOS Linux"
[2026-02-10 04:00:44] VERSION="7 (Core)"
[2026-02-10 04:00:44] ID="centos"
[2026-02-10 04:00:44] ID_LIKE="rhel fedora"
[2026-02-10 04:00:44] VERSION_ID="7"
[2026-02-10 04:00:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 04:00:44] ANSI_COLOR="0;31"
[2026-02-10 04:00:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 04:00:44] HOME_URL="https://www.centos.org/"
[2026-02-10 04:00:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 04:00:44] 
[2026-02-10 04:00:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 04:00:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 04:00:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 04:00:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 04:00:44] 
[2026-02-10 04:00:44] 2026-02-10 03:00:12,879 | INFO     | **************************************
[2026-02-10 04:00:44] 2026-02-10 03:00:12,880 | INFO     | number of running child processes to parent process 11865: 1
[2026-02-10 04:00:44] 2026-02-10 03:00:12,881 | INFO     | maximum number of monitored processes: 6
[2026-02-10 04:00:44] 2026-02-10 03:00:12,881 | INFO     | aborting job monitoring since job object (job id=7006747762) has expired
[2026-02-10 04:00:44] 2026-02-10 03:00:13,382 | INFO     | executing command: df -mP /tmp/job_11085212/atlas/pilot/slots/0
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | INFO     | sufficient remaining disk space (225398751232 B)
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | INFO     | update_server=False
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 04:00:44] 2026-02-10 03:00:13,388 | INFO     | will abort loop
[2026-02-10 04:00:44] 2026-02-10 03:00:13,540 | INFO     | all data control threads have been joined
[2026-02-10 04:00:44] 2026-02-10 03:00:13,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 04:00:44] 2026-02-10 03:00:13,738 | INFO     | all job control threads have been joined
[2026-02-10 04:00:44] 2026-02-10 03:00:14,393 | INFO     | [job] retrieve thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:14,393 | INFO     | [job] job monitor thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:14,545 | INFO     | [data] control thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:14,646 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:14,674 | INFO     | all payload control threads have been joined
[2026-02-10 04:00:44] 2026-02-10 03:00:14,743 | INFO     | [job] control thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:14,763 | INFO     | [data] copytool_in thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,095 | INFO     | [payload] validate_post thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,436 | INFO     | [payload] failed_post thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,455 | INFO     | [job] validate thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,560 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,618 | INFO     | [data] copytool_out thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,679 | INFO     | [payload] control thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:15,786 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:16,221 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 04:00:44] 2026-02-10 03:00:16,592 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 04:00:44] 2026-02-10 03:00:17,226 | INFO     | [job] queue monitor thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:19,179 | INFO     | [monitor] cgroup control has ended
[2026-02-10 04:00:44] 2026-02-10 03:00:20,597 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:24,090 | INFO     | job.realtimelogging is not enabled
[2026-02-10 04:00:44] 2026-02-10 03:00:25,095 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 04:00:44] 2026-02-10 03:00:25,810 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-10 04:00:44] 2026-02-10 03:00:30,834 | INFO     | all workflow threads have been joined
[2026-02-10 04:00:44] 2026-02-10 03:00:30,835 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 04:00:44] 2026-02-10 03:00:30,835 | INFO     | traces error code: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:30,835 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | INFO     | PID=7150 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | INFO     | .. there are 2 such processes running
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | CRITICAL | thread 'MainThread' is not alive
[2026-02-10 04:00:44] 2026-02-10 03:00:44,527 | INFO     | [monitor] control thread has ended
[2026-02-10 04:00:44] 2026-02-10 03:00:44,581 [wrapper] ==== pilot stdout END ====
[2026-02-10 04:00:44] 2026-02-10 03:00:44,582 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 04:00:44] 2026-02-10 03:00:44,583 [wrapper] pilotpid: 7150
[2026-02-10 04:00:44] 2026-02-10 03:00:44,584 [wrapper] Pilot exit status: 0
[2026-02-10 04:00:44] 2026-02-10 03:00:44,588 [wrapper] pandaids: 7006747762
[2026-02-10 04:00:44] 2026-02-10 03:00:44,608 [wrapper] cleanup supervisor_pilot 24857 7151
[2026-02-10 04:00:44] 2026-02-10 03:00:44,609 [wrapper] Test setup, not cleaning
[2026-02-10 04:00:44] 2026-02-10 03:00:44,610 [wrapper] apfmon messages muted
[2026-02-10 04:00:44] 2026-02-10 03:00:44,611 [wrapper] ==== wrapper stdout END ====
[2026-02-10 04:00:44] 2026-02-10 03:00:44,612 [wrapper] ==== wrapper stderr END ====
[2026-02-10 04:00:44]  *** Error codes and diagnostics ***
[2026-02-10 04:00:44]     "exeErrorCode": 0,
[2026-02-10 04:00:44]     "exeErrorDiag": "",
[2026-02-10 04:00:44]     "pilotErrorCode": 0,
[2026-02-10 04:00:44]     "pilotErrorDiag": "",
[2026-02-10 04:00:44]  *** Listing of results directory ***
[2026-02-10 04:00:44] total 675980
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      5111 Feb  9 16:31 queuedata.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user    584627 Feb  9 16:31 pilot3.tar.gz
[2026-02-10 04:00:44] -rwx------ 1 mf493845 unix-user     36322 Feb  9 16:32 runpilot2-wrapper.sh
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       100 Feb 10 01:00 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 04:00:44] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb 10 01:00 run_atlas
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       105 Feb 10 01:00 job.xml
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 10 03:06 start_atlas.sh
[2026-02-10 04:00:44] drwxrwx--x 2 mf493845 unix-user       100 Feb 10 03:06 shared
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user    597949 Feb 10 03:06 input.tar.gz
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      6391 Feb 10 03:06 init_data.xml
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user 495009721 Feb 10 03:06 EVNT.48318008._000201.pool.root.1
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user         0 Feb 10 03:06 boinc_setup_complete
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      8192 Feb 10 03:06 boinc_mmap_file
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user         0 Feb 10 03:06 boinc_lockfile
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      2524 Feb 10 03:06 pandaJob.out
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user   1009496 Feb 10 03:06 agis_schedconf.cvmfs.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user   1513144 Feb 10 03:06 agis_ddmendpoints.agis.ALL.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       420 Feb 10 03:06 workernode_map.json
[2026-02-10 04:00:44] drwx------ 5 mf493845 unix-user       440 Feb 10 03:06 pilot3
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user 191685869 Feb 10 03:59 HITS.48318010._015685.pool.root.1
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      1015 Feb 10 04:00 memory_monitor_summary.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user    287995 Feb 10 04:00 log.48318010._015685.job.log.tgz.1
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      6309 Feb 10 04:00 heartbeat.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       889 Feb 10 04:00 pilotlog.txt
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user        95 Feb 10 04:00 pilot_heartbeat.json
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user    509505 Feb 10 04:00 log.48318010._015685.job.log.1
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       357 Feb 10 04:00 output.list
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       620 Feb 10 04:00 runtime_log
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user    819200 Feb 10 04:00 result.tar.gz
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user      9219 Feb 10 04:00 runtime_log.err
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user       642 Feb 10 04:00 qlKLDmEQi98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmu6fKDmYj9gbn.diag
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user     22112 Feb 10 04:00 stderr.txt
[2026-02-10 04:00:44] HITS file was successfully produced:
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user 191685869 Feb 10 03:59 shared/HITS.pool.root.1
[2026-02-10 04:00:44]  *** Contents of shared directory: ***
[2026-02-10 04:00:44] total 672004
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user     15845 Feb 10 03:06 start_atlas.sh
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user    597949 Feb 10 03:06 input.tar.gz
[2026-02-10 04:00:44] -rw-r--r-- 2 mf493845 unix-user 495009721 Feb 10 03:06 ATLAS.root_0
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user 191685869 Feb 10 03:59 HITS.pool.root.1
[2026-02-10 04:00:44] -rw------- 1 mf493845 unix-user    819200 Feb 10 04:00 result.tar.gz
04:00:46 (3228): run_atlas exited; CPU time 21094.139988
04:00:46 (3228): called boinc_finish(0)

</stderr_txt>
]]>

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