Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:36:20 (300270): wrapper (7.7.26015): starting
10:36:20 (300270): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 10:36:20] Arguments: --nthreads 4
[2026-02-10 10:36:20] Threads: 4
[2026-02-10 10:36:20] Checking for CVMFS
[2026-02-10 10:36:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 10:36:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 10:36:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 10:36:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 10:36:21] 2.9.2.0 3607414 4955 98236 156083 3 50 25390192 36864001 0 130560 0 2358165 99.986 170679 11172 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 10:36:21] CVMFS is ok
[2026-02-10 10:36:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 10:36:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 10:36:21] Further information can be found at the LHC@home message board.
[2026-02-10 10:36:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 10:36:21] Checking for apptainer binary...
[2026-02-10 10:36:21] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 10:36:21] Running /usr/bin/apptainer --version
[2026-02-10 10:36:21] apptainer version 1.4.1-1.1
[2026-02-10 10:36:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 10:36:21] thA309
[2026-02-10 10:36:21] apptainer works
[2026-02-10 10:36:21] Set ATHENA_PROC_NUMBER=4
[2026-02-10 10:36:21] Set ATHENA_CORE_NUMBER=4
[2026-02-10 10:36:21] Starting ATLAS job with PandaID=7006613649
[2026-02-10 10:36:21] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 12:24:56]  *** The last 200 lines of the pilot log: ***
[2026-02-10 12:24:56] 2026-02-10 11:24:25,287 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 12:24:56] 2026-02-10 11:24:25,287 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | job 7006613649 has completed (purged errors)
[2026-02-10 12:24:56] 2026-02-10 11:24:25,288 | INFO     | overall cleanup function is called
[2026-02-10 12:24:56] 2026-02-10 11:24:26,295 | INFO     | --- collectZombieJob: --- 10, [308914]
[2026-02-10 12:24:56] 2026-02-10 11:24:26,295 | INFO     | zombie collector waiting for pid 308914
[2026-02-10 12:24:56] 2026-02-10 11:24:26,295 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 12:24:56] 2026-02-10 11:24:26,295 | INFO     | collected zombie processes
[2026-02-10 12:24:56] 2026-02-10 11:24:26,295 | INFO     | will attempt to kill all subprocesses of pid=308914
[2026-02-10 12:24:56] 2026-02-10 11:24:26,343 | INFO     | process IDs to be killed: [308914] (in reverse order)
[2026-02-10 12:24:56] 2026-02-10 11:24:26,378 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 12:24:56] 2026-02-10 11:24:26,379 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 12:24:56] 2026-02-10 11:24:26,380 | INFO     | did not find any defunct processes belonging to 308914
[2026-02-10 12:24:56] 2026-02-10 11:24:26,382 | INFO     | did not find any defunct processes belonging to 308914
[2026-02-10 12:24:56] 2026-02-10 11:24:26,382 | INFO     | ready for new job
[2026-02-10 12:24:56] 2026-02-10 11:24:26,382 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 12:24:56] 2026-02-10 11:24:26,383 | INFO     | **************************************
[2026-02-10 12:24:56] 2026-02-10 11:24:26,383 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 12:24:56] 2026-02-10 11:24:26,383 | INFO     | **************************************
[2026-02-10 12:24:56] 2026-02-10 11:24:26,383 | INFO     | 
[2026-02-10 12:24:56] 2026-02-10 11:24:26,383 | INFO     | architecture information:
[2026-02-10 12:24:56] 2026-02-10 11:24:26,384 | INFO     | executing command: cat /etc/os-release
[2026-02-10 12:24:56] 2026-02-10 11:24:26,398 | INFO     | cat /etc/os-release:
[2026-02-10 12:24:56] NAME="CentOS Linux"
[2026-02-10 12:24:56] VERSION="7 (Core)"
[2026-02-10 12:24:56] ID="centos"
[2026-02-10 12:24:56] ID_LIKE="rhel fedora"
[2026-02-10 12:24:56] VERSION_ID="7"
[2026-02-10 12:24:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 12:24:56] ANSI_COLOR="0;31"
[2026-02-10 12:24:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 12:24:56] HOME_URL="https://www.centos.org/"
[2026-02-10 12:24:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 12:24:56] 
[2026-02-10 12:24:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 12:24:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 12:24:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 12:24:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 12:24:56] 
[2026-02-10 12:24:56] 2026-02-10 11:24:26,398 | INFO     | **************************************
[2026-02-10 12:24:56] 2026-02-10 11:24:26,902 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 12:24:56] 2026-02-10 11:24:26,919 | INFO     | sufficient remaining disk space (229408505856 B)
[2026-02-10 12:24:56] 2026-02-10 11:24:26,919 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | INFO     | update_server=False
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 12:24:56] 2026-02-10 11:24:26,920 | INFO     | aborting loop
[2026-02-10 12:24:56] 2026-02-10 11:24:27,116 | INFO     | all data control threads have been joined
[2026-02-10 12:24:56] 2026-02-10 11:24:27,171 | INFO     | all payload control threads have been joined
[2026-02-10 12:24:56] 2026-02-10 11:24:27,803 | INFO     | all job control threads have been joined
[2026-02-10 12:24:56] 2026-02-10 11:24:27,925 | INFO     | [job] queue monitor thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:27,926 | INFO     | [job] retrieve thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:27,926 | INFO     | [job] job monitor thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,122 | INFO     | [data] control thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,177 | INFO     | [payload] control thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,324 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,375 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 12:24:56] 2026-02-10 11:24:28,551 | INFO     | [payload] failed_post thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,808 | INFO     | [job] control thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,865 | INFO     | [job] validate thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,872 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:28,906 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 12:24:56] 2026-02-10 11:24:28,956 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:29,083 | INFO     | [payload] validate_post thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:29,208 | INFO     | [data] copytool_in thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:30,376 | INFO     | [data] copytool_out thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:32,913 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:37,887 | INFO     | job.realtimelogging is not enabled
[2026-02-10 12:24:56] 2026-02-10 11:24:38,892 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 12:24:56] 2026-02-10 11:24:40,713 | INFO     | [monitor] cgroup control has ended
[2026-02-10 12:24:56] 2026-02-10 11:24:41,116 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140340225513280)>', '<ExcThread(monitor, started 140339423717120)>']
[2026-02-10 12:24:56] 2026-02-10 11:24:46,141 | INFO     | all workflow threads have been joined
[2026-02-10 12:24:56] 2026-02-10 11:24:46,142 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 12:24:56] 2026-02-10 11:24:46,142 | INFO     | traces error code: 0
[2026-02-10 12:24:56] 2026-02-10 11:24:46,142 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 12:24:56] 2026-02-10 11:24:56,611 | INFO     | PID=304393 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-10 12:24:56] 2026-02-10 11:24:56,612 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 12:24:56] 2026-02-10 11:24:56,612 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 12:24:56] 2026-02-10 11:24:56,612 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 12:24:56] 2026-02-10 11:24:56,612 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 12:24:56] 2026-02-10 11:24:56,612 | INFO     | [monitor] control thread has ended
[2026-02-10 12:24:56] 2026-02-10 11:24:56,688 [wrapper] ==== pilot stdout END ====
[2026-02-10 12:24:56] 2026-02-10 11:24:56,692 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 12:24:56] 2026-02-10 11:24:56,696 [wrapper] pilotpid: 304393
[2026-02-10 12:24:56] 2026-02-10 11:24:56,701 [wrapper] Pilot exit status: 0
[2026-02-10 12:24:56] 2026-02-10 11:24:56,713 [wrapper] pandaids: 7006613649
[2026-02-10 12:24:56] 2026-02-10 11:24:56,736 [wrapper] cleanup supervisor_pilot  315468 304394
[2026-02-10 12:24:56] 2026-02-10 11:24:56,740 [wrapper] Test setup, not cleaning
[2026-02-10 12:24:56] 2026-02-10 11:24:56,744 [wrapper] apfmon messages muted
[2026-02-10 12:24:56] 2026-02-10 11:24:56,748 [wrapper] ==== wrapper stdout END ====
[2026-02-10 12:24:56] 2026-02-10 11:24:56,752 [wrapper] ==== wrapper stderr END ====
[2026-02-10 12:24:56]  *** Error codes and diagnostics ***
[2026-02-10 12:24:56]     "exeErrorCode": 0,
[2026-02-10 12:24:56]     "exeErrorDiag": "",
[2026-02-10 12:24:56]     "pilotErrorCode": 0,
[2026-02-10 12:24:56]     "pilotErrorDiag": "",
[2026-02-10 12:24:56]  *** Listing of results directory ***
[2026-02-10 12:24:56] total 946312
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc    584627 Feb  9 16:31 pilot3.tar.gz
[2026-02-10 12:24:56] -rwx------ 1 boinc boinc     36322 Feb  9 16:35 runpilot2-wrapper.sh
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc      5111 Feb  9 16:38 queuedata.json
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc       100 Feb 10 10:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 12:24:56] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 10:36 run_atlas
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc       105 Feb 10 10:36 job.xml
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc 680090408 Feb 10 10:36 EVNT.48508760._000039.pool.root.1
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc    597955 Feb 10 10:36 input.tar.gz
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc     15845 Feb 10 10:36 start_atlas.sh
[2026-02-10 12:24:56] drwxrwx--x 2 boinc boinc      4096 Feb 10 10:36 shared
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc         0 Feb 10 10:36 boinc_setup_complete
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc      6377 Feb 10 10:36 init_data.xml
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc         0 Feb 10 10:36 boinc_lockfile
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc      2548 Feb 10 10:36 pandaJob.out
[2026-02-10 12:24:56] -rw------- 1 boinc boinc   1009496 Feb 10 10:36 agis_schedconf.cvmfs.json
[2026-02-10 12:24:56] -rw------- 1 boinc boinc   1512955 Feb 10 10:36 agis_ddmendpoints.agis.ALL.json
[2026-02-10 12:24:56] -rw------- 1 boinc boinc       427 Feb 10 10:36 workernode_map.json
[2026-02-10 12:24:56] drwx------ 5 boinc boinc      4096 Feb 10 10:36 pilot3
[2026-02-10 12:24:56] -rw------- 1 boinc boinc 282502742 Feb 10 12:23 HITS.48508763._001989.pool.root.1
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc       531 Feb 10 12:24 boinc_task_state.xml
[2026-02-10 12:24:56] -rw------- 1 boinc boinc        95 Feb 10 12:24 pilot_heartbeat.json
[2026-02-10 12:24:56] -rw------- 1 boinc boinc      1020 Feb 10 12:24 memory_monitor_summary.json
[2026-02-10 12:24:56] -rw------- 1 boinc boinc    319624 Feb 10 12:24 log.48508763._001989.job.log.tgz.1
[2026-02-10 12:24:56] -rw------- 1 boinc boinc      6328 Feb 10 12:24 heartbeat.json
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc        27 Feb 10 12:24 wrapper_checkpoint.txt
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc      8192 Feb 10 12:24 boinc_mmap_file
[2026-02-10 12:24:56] -rw------- 1 boinc boinc       746 Feb 10 12:24 pilotlog.txt
[2026-02-10 12:24:56] -rw------- 1 boinc boinc    933197 Feb 10 12:24 log.48508763._001989.job.log.1
[2026-02-10 12:24:56] -rw------- 1 boinc boinc       357 Feb 10 12:24 output.list
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc       620 Feb 10 12:24 runtime_log
[2026-02-10 12:24:56] -rw------- 1 boinc boinc   1269760 Feb 10 12:24 result.tar.gz
[2026-02-10 12:24:56] -rw------- 1 boinc boinc       657 Feb 10 12:24 wjDLDmITi98n9Rq4apOajLDm4fhM0noT9bVooX4SDmTdfKDmZSg1Hm.diag
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc      8896 Feb 10 12:24 runtime_log.err
[2026-02-10 12:24:56] -rw-r--r-- 1 boinc boinc     11499 Feb 10 12:24 stderr.txt
[2026-02-10 12:24:56] HITS file was successfully produced:
[2026-02-10 12:24:56] -rw------- 1 boinc boinc 282502742 Feb 10 12:23 shared/HITS.pool.root.1
[2026-02-10 12:24:56]  *** Contents of shared directory: ***
[2026-02-10 12:24:56] total 941884
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc 680090408 Feb 10 10:36 ATLAS.root_0
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc    597955 Feb 10 10:36 input.tar.gz
[2026-02-10 12:24:56] -rw-r--r-- 2 boinc boinc     15845 Feb 10 10:36 start_atlas.sh
[2026-02-10 12:24:56] -rw------- 1 boinc boinc 282502742 Feb 10 12:23 HITS.pool.root.1
[2026-02-10 12:24:56] -rw------- 1 boinc boinc   1269760 Feb 10 12:24 result.tar.gz
12:24:58 (300270): run_atlas exited; CPU time 24683.313225
12:24:58 (300270): called boinc_finish(0)

</stderr_txt>
]]>

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