Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:20:32 (2570354): wrapper (7.7.26015): starting
09:20:32 (2570354): wrapper: running run_atlas (--nthreads 3)
[2026-02-10 09:20:32] Arguments: --nthreads 3
[2026-02-10 09:20:32] Threads: 3
[2026-02-10 09:20:32] Checking for CVMFS
[2026-02-10 09:20:32] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 09:20:33] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 09:20:33] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 09:20:33] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 09:20:33] 2.9.2.0 1622115 5811 80820 156082 0 49 26495858 36864000 0 130560 0 2449036 99.984 204649 15117 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 09:20:33] CVMFS is ok
[2026-02-10 09:20:33] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 09:20:33] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 09:20:33] Further information can be found at the LHC@home message board.
[2026-02-10 09:20:33] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 09:20:33] Checking for apptainer binary...
[2026-02-10 09:20:33] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 09:20:33] Running /usr/bin/apptainer --version
[2026-02-10 09:20:33] apptainer version 1.4.1-1.1
[2026-02-10 09:20:33] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 09:20:33] magicA246a
[2026-02-10 09:20:33] apptainer works
[2026-02-10 09:20:33] Set ATHENA_PROC_NUMBER=3
[2026-02-10 09:20:33] Set ATHENA_CORE_NUMBER=3
[2026-02-10 09:20:33] Starting ATLAS job with PandaID=7006312543
[2026-02-10 09:20:33] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 10:51:03]  *** The last 200 lines of the pilot log: ***
[2026-02-10 10:51:03] 2026-02-10 09:50:45,566 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | **************************************
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | **************************************
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | 
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | architecture information:
[2026-02-10 10:51:03] 2026-02-10 09:50:45,567 | INFO     | executing command: cat /etc/os-release
[2026-02-10 10:51:03] 2026-02-10 09:50:45,576 | INFO     | cat /etc/os-release:
[2026-02-10 10:51:03] NAME="CentOS Linux"
[2026-02-10 10:51:03] VERSION="7 (Core)"
[2026-02-10 10:51:03] ID="centos"
[2026-02-10 10:51:03] ID_LIKE="rhel fedora"
[2026-02-10 10:51:03] VERSION_ID="7"
[2026-02-10 10:51:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 10:51:03] ANSI_COLOR="0;31"
[2026-02-10 10:51:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 10:51:03] HOME_URL="https://www.centos.org/"
[2026-02-10 10:51:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 10:51:03] 
[2026-02-10 10:51:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 10:51:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 10:51:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 10:51:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 10:51:03] 
[2026-02-10 10:51:03] 2026-02-10 09:50:45,576 | INFO     | **************************************
[2026-02-10 10:51:03] 2026-02-10 09:50:45,866 | WARNING  | process 2578828 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 10:51:03] 2026-02-10 09:50:45,906 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 10:51:03] 2026-02-10 09:50:45,956 | INFO     | number of running child processes to parent process 2578828: 1
[2026-02-10 10:51:03] 2026-02-10 09:50:45,956 | INFO     | maximum number of monitored processes: 6
[2026-02-10 10:51:03] 2026-02-10 09:50:45,956 | INFO     | aborting job monitoring since job object (job id=7006312543) has expired
[2026-02-10 10:51:03] 2026-02-10 09:50:46,079 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 10:51:03] 2026-02-10 09:50:46,091 | INFO     | sufficient remaining disk space (273891196928 B)
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | INFO     | update_server=False
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | INFO     | will abort loop
[2026-02-10 10:51:03] 2026-02-10 09:50:46,092 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 10:51:03] 2026-02-10 09:50:46,093 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 10:51:03] 2026-02-10 09:50:46,093 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 10:51:03] 2026-02-10 09:50:46,476 | INFO     | all data control threads have been joined
[2026-02-10 10:51:03] 2026-02-10 09:50:47,089 | INFO     | all job control threads have been joined
[2026-02-10 10:51:03] 2026-02-10 09:50:47,097 | INFO     | [job] retrieve thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:47,098 | INFO     | [job] job monitor thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:47,112 | INFO     | all payload control threads have been joined
[2026-02-10 10:51:03] 2026-02-10 09:50:47,175 | INFO     | [payload] failed_post thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:47,301 | INFO     | [data] copytool_in thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:47,482 | INFO     | [data] control thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:47,637 | INFO     | [monitor] cgroup control has ended
[2026-02-10 10:51:03] 2026-02-10 09:50:48,037 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,094 | INFO     | [job] control thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,098 | INFO     | [data] copytool_out thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,117 | INFO     | [payload] control thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,359 | INFO     | [payload] validate_post thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,436 | INFO     | [job] validate thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,575 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,586 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:48,980 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 10:51:03] 2026-02-10 09:50:49,985 | INFO     | [job] queue monitor thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:50,099 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:56,608 | INFO     | job.realtimelogging is not enabled
[2026-02-10 10:51:03] 2026-02-10 09:50:57,614 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 10:51:03] 2026-02-10 09:50:58,527 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139735759124288)>', '<ExcThread(monitor, started 139735234221824)>']
[2026-02-10 10:51:03] 2026-02-10 09:50:59,155 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 10:51:03] 2026-02-10 09:50:59,156 | INFO     | [monitor] control thread has ended
[2026-02-10 10:51:03] 2026-02-10 09:51:03,531 | INFO     | all workflow threads have been joined
[2026-02-10 10:51:03] 2026-02-10 09:51:03,531 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 10:51:03] 2026-02-10 09:51:03,532 | INFO     | traces error code: 0
[2026-02-10 10:51:03] 2026-02-10 09:51:03,532 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 10:51:03] 2026-02-10 09:51:03,585 [wrapper] ==== pilot stdout END ====
[2026-02-10 10:51:03] 2026-02-10 09:51:03,587 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 10:51:03] 2026-02-10 09:51:03,590 [wrapper] pilotpid: 2574402
[2026-02-10 10:51:03] 2026-02-10 09:51:03,592 [wrapper] Pilot exit status: 0
[2026-02-10 10:51:03] 2026-02-10 09:51:03,600 [wrapper] pandaids: 7006312543
[2026-02-10 10:51:03] 2026-02-10 09:51:03,619 [wrapper] cleanup supervisor_pilot 2585410 2574403
[2026-02-10 10:51:03] 2026-02-10 09:51:03,621 [wrapper] Test setup, not cleaning
[2026-02-10 10:51:03] 2026-02-10 09:51:03,623 [wrapper] apfmon messages muted
[2026-02-10 10:51:03] 2026-02-10 09:51:03,626 [wrapper] ==== wrapper stdout END ====
[2026-02-10 10:51:03] 2026-02-10 09:51:03,628 [wrapper] ==== wrapper stderr END ====
[2026-02-10 10:51:03]  *** Error codes and diagnostics ***
[2026-02-10 10:51:03]     "exeErrorCode": 0,
[2026-02-10 10:51:03]     "exeErrorDiag": "",
[2026-02-10 10:51:03]     "pilotErrorCode": 0,
[2026-02-10 10:51:03]     "pilotErrorDiag": "",
[2026-02-10 10:51:03]  *** Listing of results directory ***
[2026-02-10 10:51:03] total 683360
[2026-02-10 10:51:03] -rwx------ 1 boinc boinc     36322 Feb  9 14:23 runpilot2-wrapper.sh
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc    584627 Feb  9 14:24 pilot3.tar.gz
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc      5111 Feb  9 14:25 queuedata.json
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc       100 Feb 10 09:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 10:51:03] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 09:20 run_atlas
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc       105 Feb 10 09:20 job.xml
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc 504032316 Feb 10 09:20 EVNT.48318016._000134.pool.root.1
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc    597947 Feb 10 09:20 input.tar.gz
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc     15845 Feb 10 09:20 start_atlas.sh
[2026-02-10 10:51:03] drwxrwx--x 2 boinc boinc      4096 Feb 10 09:20 shared
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc         0 Feb 10 09:20 boinc_setup_complete
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc      6447 Feb 10 09:20 init_data.xml
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc         0 Feb 10 09:20 boinc_lockfile
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc      2521 Feb 10 09:20 pandaJob.out
[2026-02-10 10:51:03] -rw------- 1 boinc boinc   1009488 Feb 10 09:20 agis_schedconf.cvmfs.json
[2026-02-10 10:51:03] -rw------- 1 boinc boinc   1513144 Feb 10 09:20 agis_ddmendpoints.agis.ALL.json
[2026-02-10 10:51:03] -rw------- 1 boinc boinc       427 Feb 10 09:20 workernode_map.json
[2026-02-10 10:51:03] drwx------ 5 boinc boinc      4096 Feb 10 09:20 pilot3
[2026-02-10 10:51:03] -rw------- 1 boinc boinc        95 Feb 10 10:50 pilot_heartbeat.json
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc       530 Feb 10 10:50 boinc_task_state.xml
[2026-02-10 10:51:03] -rw------- 1 boinc boinc 189640490 Feb 10 10:50 HITS.48318018._006836.pool.root.1
[2026-02-10 10:51:03] -rw------- 1 boinc boinc      1019 Feb 10 10:50 memory_monitor_summary.json
[2026-02-10 10:51:03] -rw------- 1 boinc boinc    291955 Feb 10 10:50 log.48318018._006836.job.log.tgz.1
[2026-02-10 10:51:03] -rw------- 1 boinc boinc      6317 Feb 10 10:50 heartbeat.json
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc      8192 Feb 10 10:50 boinc_mmap_file
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc        27 Feb 10 10:50 wrapper_checkpoint.txt
[2026-02-10 10:51:03] -rw------- 1 boinc boinc      5148 Feb 10 10:51 pilotlog.txt
[2026-02-10 10:51:03] -rw------- 1 boinc boinc    786719 Feb 10 10:51 log.48318018._006836.job.log.1
[2026-02-10 10:51:03] -rw------- 1 boinc boinc       357 Feb 10 10:51 output.list
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc       620 Feb 10 10:51 runtime_log
[2026-02-10 10:51:03] -rw------- 1 boinc boinc   1095680 Feb 10 10:51 result.tar.gz
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc      8916 Feb 10 10:51 runtime_log.err
[2026-02-10 10:51:03] -rw------- 1 boinc boinc       661 Feb 10 10:51 YbxNDmtPg98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDm54fKDmvubcJo.diag
[2026-02-10 10:51:03] -rw-r--r-- 1 boinc boinc     10100 Feb 10 10:51 stderr.txt
[2026-02-10 10:51:03] HITS file was successfully produced:
[2026-02-10 10:51:03] -rw------- 1 boinc boinc 189640490 Feb 10 10:50 shared/HITS.pool.root.1
[2026-02-10 10:51:03]  *** Contents of shared directory: ***
[2026-02-10 10:51:03] total 679096
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc 504032316 Feb 10 09:20 ATLAS.root_0
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc    597947 Feb 10 09:20 input.tar.gz
[2026-02-10 10:51:03] -rw-r--r-- 2 boinc boinc     15845 Feb 10 09:20 start_atlas.sh
[2026-02-10 10:51:03] -rw------- 1 boinc boinc 189640490 Feb 10 10:50 HITS.pool.root.1
[2026-02-10 10:51:03] -rw------- 1 boinc boinc   1095680 Feb 10 10:51 result.tar.gz
10:51:05 (2570354): run_atlas exited; CPU time 15434.407990
10:51:05 (2570354): called boinc_finish(0)

</stderr_txt>
]]>

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