Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:01:44 (3772611): wrapper (7.7.26015): starting
06:01:44 (3772611): wrapper: running run_atlas (--nthreads 3)
[2026-02-10 06:01:44] Arguments: --nthreads 3
[2026-02-10 06:01:44] Threads: 3
[2026-02-10 06:01:44] Checking for CVMFS
[2026-02-10 06:01:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 06:01:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 06:01:44] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 06:01:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 06:01:45] 2.9.2.0 2962440 5546 81148 156076 0 50 27343036 36864000 0 130560 0 2328759 99.984 196155 7612 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 06:01:45] CVMFS is ok
[2026-02-10 06:01:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 06:01:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 06:01:45] Further information can be found at the LHC@home message board.
[2026-02-10 06:01:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 06:01:45] Checking for apptainer binary...
[2026-02-10 06:01:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 06:01:45] Running /usr/bin/apptainer --version
[2026-02-10 06:01:45] apptainer version 1.4.1-1.1
[2026-02-10 06:01:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 06:01:45] magicA161a
[2026-02-10 06:01:45] apptainer works
[2026-02-10 06:01:45] Set ATHENA_PROC_NUMBER=3
[2026-02-10 06:01:45] Set ATHENA_CORE_NUMBER=3
[2026-02-10 06:01:45] Starting ATLAS job with PandaID=7006308799
[2026-02-10 06:01:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 07:28:19]  *** The last 200 lines of the pilot log: ***
[2026-02-10 07:28:19] 2026-02-10 06:27:48,980 | INFO     | --- collectZombieJob: --- 10, [3781083]
[2026-02-10 07:28:19] 2026-02-10 06:27:48,981 | INFO     | zombie collector waiting for pid 3781083
[2026-02-10 07:28:19] 2026-02-10 06:27:48,981 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 07:28:19] 2026-02-10 06:27:48,981 | INFO     | collected zombie processes
[2026-02-10 07:28:19] 2026-02-10 06:27:48,981 | INFO     | will attempt to kill all subprocesses of pid=3781083
[2026-02-10 07:28:19] 2026-02-10 06:27:49,023 | INFO     | process IDs to be killed: [3781083] (in reverse order)
[2026-02-10 07:28:19] 2026-02-10 06:27:49,047 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 07:28:19] 2026-02-10 06:27:49,047 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 07:28:19] 2026-02-10 06:27:49,048 | INFO     | did not find any defunct processes belonging to 3781083
[2026-02-10 07:28:19] 2026-02-10 06:27:49,049 | INFO     | did not find any defunct processes belonging to 3781083
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | ready for new job
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | **************************************
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | **************************************
[2026-02-10 07:28:19] 2026-02-10 06:27:49,050 | INFO     | 
[2026-02-10 07:28:19] 2026-02-10 06:27:49,051 | INFO     | architecture information:
[2026-02-10 07:28:19] 2026-02-10 06:27:49,051 | INFO     | executing command: cat /etc/os-release
[2026-02-10 07:28:19] 2026-02-10 06:27:49,059 | INFO     | cat /etc/os-release:
[2026-02-10 07:28:19] NAME="CentOS Linux"
[2026-02-10 07:28:19] VERSION="7 (Core)"
[2026-02-10 07:28:19] ID="centos"
[2026-02-10 07:28:19] ID_LIKE="rhel fedora"
[2026-02-10 07:28:19] VERSION_ID="7"
[2026-02-10 07:28:19] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 07:28:19] ANSI_COLOR="0;31"
[2026-02-10 07:28:19] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 07:28:19] HOME_URL="https://www.centos.org/"
[2026-02-10 07:28:19] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 07:28:19] 
[2026-02-10 07:28:19] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 07:28:19] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 07:28:19] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 07:28:19] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 07:28:19] 
[2026-02-10 07:28:19] 2026-02-10 06:27:49,059 | INFO     | **************************************
[2026-02-10 07:28:19] 2026-02-10 06:27:49,562 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | INFO     | sufficient remaining disk space (373724020736 B)
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | INFO     | update_server=False
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 07:28:19] 2026-02-10 06:27:49,575 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 07:28:19] 2026-02-10 06:27:49,995 | INFO     | all job control threads have been joined
[2026-02-10 07:28:19] 2026-02-10 06:27:50,242 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 07:28:19] 2026-02-10 06:27:50,298 | INFO     | all data control threads have been joined
[2026-02-10 07:28:19] 2026-02-10 06:27:50,576 | INFO     | [job] queue monitor thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:50,580 | INFO     | [job] retrieve thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:50,630 | INFO     | [payload] failed_post thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:50,775 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:50,796 | INFO     | all payload control threads have been joined
[2026-02-10 07:28:19] 2026-02-10 06:27:50,903 | WARNING  | process 3781083 can no longer be monitored (due to stat problems) - aborting
[2026-02-10 07:28:19] 2026-02-10 06:27:50,933 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-10 07:28:19] 2026-02-10 06:27:50,970 | INFO     | number of running child processes to parent process 3781083: 1
[2026-02-10 07:28:19] 2026-02-10 06:27:50,970 | INFO     | maximum number of monitored processes: 6
[2026-02-10 07:28:19] 2026-02-10 06:27:50,970 | INFO     | aborting job monitoring since job object (job id=7006308799) has expired
[2026-02-10 07:28:19] 2026-02-10 06:27:50,970 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 07:28:19] 2026-02-10 06:27:50,970 | INFO     | will abort loop
[2026-02-10 07:28:19] 2026-02-10 06:27:50,981 | INFO     | [job] validate thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,000 | INFO     | [job] control thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,133 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,144 | INFO     | [payload] validate_post thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,205 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,304 | INFO     | [data] control thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,319 | INFO     | [data] copytool_in thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,801 | INFO     | [payload] control thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:51,976 | INFO     | [job] job monitor thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:52,248 | INFO     | [data] copytool_out thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:27:53,583 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:28:00,460 | INFO     | [monitor] cgroup control has ended
[2026-02-10 07:28:19] 2026-02-10 06:28:00,503 | INFO     | job.realtimelogging is not enabled
[2026-02-10 07:28:19] 2026-02-10 06:28:01,508 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 07:28:19] 2026-02-10 06:28:02,675 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139698187659072)>', '<ExcThread(monitor, started 139697569396480)>']
[2026-02-10 07:28:19] 2026-02-10 06:28:07,692 | INFO     | all workflow threads have been joined
[2026-02-10 07:28:19] 2026-02-10 06:28:07,692 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 07:28:19] 2026-02-10 06:28:07,692 | INFO     | traces error code: 0
[2026-02-10 07:28:19] 2026-02-10 06:28:07,693 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 07:28:19] 2026-02-10 06:28:19,420 | INFO     | PID=3776657 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 07:28:19] 2026-02-10 06:28:19,421 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 07:28:19] 2026-02-10 06:28:19,421 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 07:28:19] 2026-02-10 06:28:19,421 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 07:28:19] 2026-02-10 06:28:19,421 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 07:28:19] 2026-02-10 06:28:19,421 | INFO     | [monitor] control thread has ended
[2026-02-10 07:28:19] 2026-02-10 06:28:19,470 [wrapper] ==== pilot stdout END ====
[2026-02-10 07:28:19] 2026-02-10 06:28:19,473 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 07:28:19] 2026-02-10 06:28:19,475 [wrapper] pilotpid: 3776657
[2026-02-10 07:28:19] 2026-02-10 06:28:19,477 [wrapper] Pilot exit status: 0
[2026-02-10 07:28:19] 2026-02-10 06:28:19,484 [wrapper] pandaids: 7006308799
[2026-02-10 07:28:19] 2026-02-10 06:28:19,500 [wrapper] cleanup supervisor_pilot 3786166 3776658
[2026-02-10 07:28:19] 2026-02-10 06:28:19,503 [wrapper] Test setup, not cleaning
[2026-02-10 07:28:19] 2026-02-10 06:28:19,505 [wrapper] apfmon messages muted
[2026-02-10 07:28:19] 2026-02-10 06:28:19,507 [wrapper] ==== wrapper stdout END ====
[2026-02-10 07:28:19] 2026-02-10 06:28:19,510 [wrapper] ==== wrapper stderr END ====
[2026-02-10 07:28:19]  *** Error codes and diagnostics ***
[2026-02-10 07:28:19]     "exeErrorCode": 0,
[2026-02-10 07:28:19]     "exeErrorDiag": "",
[2026-02-10 07:28:19]     "pilotErrorCode": 0,
[2026-02-10 07:28:19]     "pilotErrorDiag": "",
[2026-02-10 07:28:19]  *** Listing of results directory ***
[2026-02-10 07:28:19] total 675932
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc    584627 Feb  9 12:10 pilot3.tar.gz
[2026-02-10 07:28:19] -rwx------ 1 boinc boinc     36322 Feb  9 12:11 runpilot2-wrapper.sh
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc      5111 Feb  9 12:13 queuedata.json
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc       100 Feb 10 06:01 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 07:28:19] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 06:01 run_atlas
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc       105 Feb 10 06:01 job.xml
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc 495158725 Feb 10 06:01 EVNT.48318032._000231.pool.root.1
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc    597960 Feb 10 06:01 input.tar.gz
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc     15845 Feb 10 06:01 start_atlas.sh
[2026-02-10 07:28:19] drwxrwx--x 2 boinc boinc      4096 Feb 10 06:01 shared
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc         0 Feb 10 06:01 boinc_setup_complete
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc      6448 Feb 10 06:01 init_data.xml
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc         0 Feb 10 06:01 boinc_lockfile
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc      2537 Feb 10 06:01 pandaJob.out
[2026-02-10 07:28:19] -rw------- 1 boinc boinc   1009504 Feb 10 06:01 agis_schedconf.cvmfs.json
[2026-02-10 07:28:19] -rw------- 1 boinc boinc   1513144 Feb 10 06:01 agis_ddmendpoints.agis.ALL.json
[2026-02-10 07:28:19] -rw------- 1 boinc boinc       427 Feb 10 06:01 workernode_map.json
[2026-02-10 07:28:19] drwx------ 5 boinc boinc      4096 Feb 10 06:01 pilot3
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc       530 Feb 10 07:27 boinc_task_state.xml
[2026-02-10 07:28:19] -rw------- 1 boinc boinc 191057477 Feb 10 07:27 HITS.48318034._013172.pool.root.1
[2026-02-10 07:28:19] -rw------- 1 boinc boinc      1017 Feb 10 07:27 memory_monitor_summary.json
[2026-02-10 07:28:19] -rw------- 1 boinc boinc    256982 Feb 10 07:27 log.48318034._013172.job.log.tgz.1
[2026-02-10 07:28:19] -rw------- 1 boinc boinc      6317 Feb 10 07:27 heartbeat.json
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc        27 Feb 10 07:27 wrapper_checkpoint.txt
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc      8192 Feb 10 07:27 boinc_mmap_file
[2026-02-10 07:28:19] -rw------- 1 boinc boinc       747 Feb 10 07:28 pilotlog.txt
[2026-02-10 07:28:19] -rw------- 1 boinc boinc        95 Feb 10 07:28 pilot_heartbeat.json
[2026-02-10 07:28:19] -rw------- 1 boinc boinc    753318 Feb 10 07:28 log.48318034._013172.job.log.1
[2026-02-10 07:28:19] -rw------- 1 boinc boinc       357 Feb 10 07:28 output.list
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc       620 Feb 10 07:28 runtime_log
[2026-02-10 07:28:19] -rw------- 1 boinc boinc   1024000 Feb 10 07:28 result.tar.gz
[2026-02-10 07:28:19] -rw------- 1 boinc boinc       661 Feb 10 07:28 uv8MDm1Le98n9Rq4apOajLDm4fhM0noT9bVooX4SDmx8eKDmypaHEm.diag
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc      8916 Feb 10 07:28 runtime_log.err
[2026-02-10 07:28:19] -rw-r--r-- 1 boinc boinc     11342 Feb 10 07:28 stderr.txt
[2026-02-10 07:28:19] HITS file was successfully produced:
[2026-02-10 07:28:19] -rw------- 1 boinc boinc 191057477 Feb 10 07:27 shared/HITS.pool.root.1
[2026-02-10 07:28:19]  *** Contents of shared directory: ***
[2026-02-10 07:28:19] total 671744
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc 495158725 Feb 10 06:01 ATLAS.root_0
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc    597960 Feb 10 06:01 input.tar.gz
[2026-02-10 07:28:19] -rw-r--r-- 2 boinc boinc     15845 Feb 10 06:01 start_atlas.sh
[2026-02-10 07:28:19] -rw------- 1 boinc boinc 191057477 Feb 10 07:27 HITS.pool.root.1
[2026-02-10 07:28:19] -rw------- 1 boinc boinc   1024000 Feb 10 07:28 result.tar.gz
07:28:21 (3772611): run_atlas exited; CPU time 14770.294827
07:28:21 (3772611): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN