Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:08:48 (3416521): wrapper (7.7.26015): starting
02:08:48 (3416521): wrapper: running run_atlas (--nthreads 2)
[2026-02-10 02:08:48] Arguments: --nthreads 2
[2026-02-10 02:08:48] Threads: 2
[2026-02-10 02:08:48] Checking for CVMFS
[2026-02-10 02:08:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 02:08:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 02:08:48] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 02:08:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 02:08:49] 2.9.2.0 2908847 5281 60612 156070 0 50 22827598 36864000 0 130560 0 1513531 99.976 186507 6275 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 02:08:49] CVMFS is ok
[2026-02-10 02:08:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 02:08:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 02:08:49] Further information can be found at the LHC@home message board.
[2026-02-10 02:08:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 02:08:49] Checking for apptainer binary...
[2026-02-10 02:08:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 02:08:49] Running /usr/bin/apptainer --version
[2026-02-10 02:08:49] apptainer version 1.4.1-1.1
[2026-02-10 02:08:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 02:08:49] madmaxA277a
[2026-02-10 02:08:49] apptainer works
[2026-02-10 02:08:49] Set ATHENA_PROC_NUMBER=2
[2026-02-10 02:08:49] Set ATHENA_CORE_NUMBER=2
[2026-02-10 02:08:49] Starting ATLAS job with PandaID=7008813651
[2026-02-10 02:08:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 05:13:30]  *** The last 200 lines of the pilot log: ***
[2026-02-10 05:13:30] 2026-02-10 04:12:59,937 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 05:13:30] 2026-02-10 04:12:59,937 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 05:13:30] 2026-02-10 04:12:59,937 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 05:13:30] 2026-02-10 04:12:59,937 | INFO     | job 7008813651 has completed (purged errors)
[2026-02-10 05:13:30] 2026-02-10 04:12:59,937 | INFO     | overall cleanup function is called
[2026-02-10 05:13:30] 2026-02-10 04:13:00,942 | INFO     | --- collectZombieJob: --- 10, [3424961]
[2026-02-10 05:13:30] 2026-02-10 04:13:00,942 | INFO     | zombie collector waiting for pid 3424961
[2026-02-10 05:13:30] 2026-02-10 04:13:00,943 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 05:13:30] 2026-02-10 04:13:00,943 | INFO     | collected zombie processes
[2026-02-10 05:13:30] 2026-02-10 04:13:00,943 | INFO     | will attempt to kill all subprocesses of pid=3424961
[2026-02-10 05:13:30] 2026-02-10 04:13:00,977 | INFO     | process IDs to be killed: [3424961] (in reverse order)
[2026-02-10 05:13:30] 2026-02-10 04:13:00,997 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 05:13:30] 2026-02-10 04:13:00,997 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 05:13:30] 2026-02-10 04:13:00,998 | INFO     | did not find any defunct processes belonging to 3424961
[2026-02-10 05:13:30] 2026-02-10 04:13:00,999 | INFO     | did not find any defunct processes belonging to 3424961
[2026-02-10 05:13:30] 2026-02-10 04:13:00,999 | INFO     | ready for new job
[2026-02-10 05:13:30] 2026-02-10 04:13:00,999 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 05:13:30] 2026-02-10 04:13:00,999 | INFO     | **************************************
[2026-02-10 05:13:30] 2026-02-10 04:13:01,000 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 05:13:30] 2026-02-10 04:13:01,000 | INFO     | **************************************
[2026-02-10 05:13:30] 2026-02-10 04:13:01,000 | INFO     | 
[2026-02-10 05:13:30] 2026-02-10 04:13:01,000 | INFO     | architecture information:
[2026-02-10 05:13:30] 2026-02-10 04:13:01,000 | INFO     | executing command: cat /etc/os-release
[2026-02-10 05:13:30] 2026-02-10 04:13:01,008 | INFO     | cat /etc/os-release:
[2026-02-10 05:13:30] NAME="CentOS Linux"
[2026-02-10 05:13:30] VERSION="7 (Core)"
[2026-02-10 05:13:30] ID="centos"
[2026-02-10 05:13:30] ID_LIKE="rhel fedora"
[2026-02-10 05:13:30] VERSION_ID="7"
[2026-02-10 05:13:30] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 05:13:30] ANSI_COLOR="0;31"
[2026-02-10 05:13:30] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 05:13:30] HOME_URL="https://www.centos.org/"
[2026-02-10 05:13:30] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 05:13:30] 
[2026-02-10 05:13:30] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 05:13:30] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 05:13:30] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 05:13:30] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 05:13:30] 
[2026-02-10 05:13:30] 2026-02-10 04:13:01,008 | INFO     | **************************************
[2026-02-10 05:13:30] 2026-02-10 04:13:01,510 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 05:13:30] 2026-02-10 04:13:01,522 | INFO     | sufficient remaining disk space (492862177280 B)
[2026-02-10 05:13:30] 2026-02-10 04:13:01,522 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | INFO     | update_server=False
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 05:13:30] 2026-02-10 04:13:01,523 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 05:13:30] 2026-02-10 04:13:02,122 | INFO     | all data control threads have been joined
[2026-02-10 05:13:30] 2026-02-10 04:13:02,229 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 05:13:30] 2026-02-10 04:13:02,229 | INFO     | aborting loop
[2026-02-10 05:13:30] 2026-02-10 04:13:02,258 | INFO     | all job control threads have been joined
[2026-02-10 05:13:30] 2026-02-10 04:13:02,455 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 05:13:30] 2026-02-10 04:13:02,463 | INFO     | all payload control threads have been joined
[2026-02-10 05:13:30] 2026-02-10 04:13:02,528 | INFO     | [job] retrieve thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:02,715 | INFO     | [data] copytool_in thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:02,893 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,128 | INFO     | [data] control thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,172 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,224 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,235 | INFO     | [job] job monitor thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,236 | INFO     | [job] validate thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,260 | INFO     | [job] control thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,295 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,316 | INFO     | [payload] validate_post thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:03,469 | INFO     | [payload] control thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:04,063 | INFO     | [payload] failed_post thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:04,431 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 05:13:30] 2026-02-10 04:13:04,461 | INFO     | [data] copytool_out thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:05,437 | INFO     | [job] queue monitor thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:05,530 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 05:13:30] 2026-02-10 04:13:23,869 | INFO     | [monitor] cgroup control has ended
[2026-02-10 05:13:30] 2026-02-10 04:13:24,875 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322882320192)>', '<ExcThread(monitor, started 140322378065664)>']
[2026-02-10 05:13:30] 2026-02-10 04:13:25,645 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 05:13:30] 2026-02-10 04:13:25,645 | INFO     | [monitor] control thread has ended
[2026-02-10 05:13:30] 2026-02-10 04:13:29,901 | INFO     | all workflow threads have been joined
[2026-02-10 05:13:30] 2026-02-10 04:13:29,902 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 05:13:30] 2026-02-10 04:13:29,902 | INFO     | traces error code: 0
[2026-02-10 05:13:30] 2026-02-10 04:13:29,903 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 05:13:30] 2026-02-10 04:13:29,944 [wrapper] ==== pilot stdout END ====
[2026-02-10 05:13:30] 2026-02-10 04:13:29,947 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 05:13:30] 2026-02-10 04:13:29,949 [wrapper] pilotpid: 3420550
[2026-02-10 05:13:30] 2026-02-10 04:13:29,951 [wrapper] Pilot exit status: 0
[2026-02-10 05:13:30] 2026-02-10 04:13:29,957 [wrapper] pandaids: 7008813651
[2026-02-10 05:13:30] 2026-02-10 04:13:29,969 [wrapper] cleanup supervisor_pilot 3430131 3420551
[2026-02-10 05:13:30] 2026-02-10 04:13:29,971 [wrapper] Test setup, not cleaning
[2026-02-10 05:13:30] 2026-02-10 04:13:29,973 [wrapper] apfmon messages muted
[2026-02-10 05:13:30] 2026-02-10 04:13:29,975 [wrapper] ==== wrapper stdout END ====
[2026-02-10 05:13:30] 2026-02-10 04:13:29,977 [wrapper] ==== wrapper stderr END ====
[2026-02-10 05:13:30]  *** Error codes and diagnostics ***
[2026-02-10 05:13:30]     "exeErrorCode": 0,
[2026-02-10 05:13:30]     "exeErrorDiag": "",
[2026-02-10 05:13:30]     "pilotErrorCode": 0,
[2026-02-10 05:13:30]     "pilotErrorDiag": "",
[2026-02-10 05:13:30]  *** Listing of results directory ***
[2026-02-10 05:13:30] total 949100
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc    584627 Feb  9 09:16 pilot3.tar.gz
[2026-02-10 05:13:30] -rwx------ 1 boinc boinc     36322 Feb  9 09:17 runpilot2-wrapper.sh
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc      5111 Feb  9 09:18 queuedata.json
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc       100 Feb 10 02:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 05:13:30] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 02:08 run_atlas
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc       105 Feb 10 02:08 job.xml
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc 682204747 Feb 10 02:08 EVNT.48431094._000355.pool.root.1
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc    597963 Feb 10 02:08 input.tar.gz
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc     15845 Feb 10 02:08 start_atlas.sh
[2026-02-10 05:13:30] drwxrwx--x 2 boinc boinc      4096 Feb 10 02:08 shared
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc         0 Feb 10 02:08 boinc_setup_complete
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc      6210 Feb 10 02:08 init_data.xml
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc         0 Feb 10 02:08 boinc_lockfile
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc      2556 Feb 10 02:08 pandaJob.out
[2026-02-10 05:13:30] -rw------- 1 boinc boinc   1009496 Feb 10 02:09 agis_schedconf.cvmfs.json
[2026-02-10 05:13:30] -rw------- 1 boinc boinc       424 Feb 10 02:09 workernode_map.json
[2026-02-10 05:13:30] drwx------ 5 boinc boinc      4096 Feb 10 02:09 pilot3
[2026-02-10 05:13:30] -rw------- 1 boinc boinc        95 Feb 10 05:12 pilot_heartbeat.json
[2026-02-10 05:13:30] -rw------- 1 boinc boinc 281892858 Feb 10 05:12 HITS.48431096._016308.pool.root.1
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc       531 Feb 10 05:12 boinc_task_state.xml
[2026-02-10 05:13:30] -rw------- 1 boinc boinc      1022 Feb 10 05:12 memory_monitor_summary.json
[2026-02-10 05:13:30] -rw------- 1 boinc boinc   1513144 Feb 10 05:12 agis_ddmendpoints.agis.ALL.json
[2026-02-10 05:13:30] -rw------- 1 boinc boinc    362105 Feb 10 05:12 log.48431096._016308.job.log.tgz.1
[2026-02-10 05:13:30] -rw------- 1 boinc boinc      6328 Feb 10 05:12 heartbeat.json
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc      8192 Feb 10 05:13 boinc_mmap_file
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc        28 Feb 10 05:13 wrapper_checkpoint.txt
[2026-02-10 05:13:30] -rw------- 1 boinc boinc      4552 Feb 10 05:13 pilotlog.txt
[2026-02-10 05:13:30] -rw------- 1 boinc boinc   1564129 Feb 10 05:13 log.48431096._016308.job.log.1
[2026-02-10 05:13:30] -rw------- 1 boinc boinc       357 Feb 10 05:13 output.list
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc       620 Feb 10 05:13 runtime_log
[2026-02-10 05:13:30] -rw------- 1 boinc boinc   1945600 Feb 10 05:13 result.tar.gz
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc      8922 Feb 10 05:13 runtime_log.err
[2026-02-10 05:13:30] -rw------- 1 boinc boinc       665 Feb 10 05:13 jQZKDmHdb98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmpVfKDmIV9A3m.diag
[2026-02-10 05:13:30] -rw-r--r-- 1 boinc boinc     11034 Feb 10 05:13 stderr.txt
[2026-02-10 05:13:30] HITS file was successfully produced:
[2026-02-10 05:13:30] -rw------- 1 boinc boinc 281892858 Feb 10 05:12 shared/HITS.pool.root.1
[2026-02-10 05:13:30]  *** Contents of shared directory: ***
[2026-02-10 05:13:30] total 944012
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc 682204747 Feb 10 02:08 ATLAS.root_0
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc    597963 Feb 10 02:08 input.tar.gz
[2026-02-10 05:13:30] -rw-r--r-- 2 boinc boinc     15845 Feb 10 02:08 start_atlas.sh
[2026-02-10 05:13:30] -rw------- 1 boinc boinc 281892858 Feb 10 05:12 HITS.pool.root.1
[2026-02-10 05:13:30] -rw------- 1 boinc boinc   1945600 Feb 10 05:13 result.tar.gz
05:13:32 (3416521): run_atlas exited; CPU time 21612.500737
05:13:32 (3416521): called boinc_finish(0)

</stderr_txt>
]]>

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