Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:04:34 (3382337): wrapper (7.7.26015): starting
10:04:34 (3382337): wrapper: running run_atlas (--nthreads 9)
[2026-02-09 10:04:34] Arguments: --nthreads 9
[2026-02-09 10:04:34] Threads: 9
[2026-02-09 10:04:34] Checking for CVMFS
[2026-02-09 10:04:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 10:04:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 10:04:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 10:04:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 10:04:35] 2.13.3.0 313591 61702 114440 156054 1 188 18875450 37030912 1832 16776704 0 48699565 99.990 2218453 31994 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-09 10:04:35] CVMFS is ok
[2026-02-09 10:04:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 10:04:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 10:04:35] Further information can be found at the LHC@home message board.
[2026-02-09 10:04:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 10:04:35] Checking for apptainer binary...
[2026-02-09 10:04:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 10:04:35] Running /usr/bin/apptainer --version
[2026-02-09 10:04:35] apptainer version 1.4.5-2.el9
[2026-02-09 10:04:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 10:04:35] c-205-37.aglt2.org
[2026-02-09 10:04:35] apptainer works
[2026-02-09 10:04:35] Set ATHENA_PROC_NUMBER=9
[2026-02-09 10:04:35] Set ATHENA_CORE_NUMBER=9
[2026-02-09 10:04:35] Starting ATLAS job with PandaID=7008632440
[2026-02-09 10:04:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 12:05:05]  *** The last 200 lines of the pilot log: ***
[2026-02-09 12:05:05] 2026-02-09 17:04:12,599 | INFO     | total number of processed events: 400 (read)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,605 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-7008632440/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,606 | INFO     | extracted standard info from prmon json
[2026-02-09 12:05:05] 2026-02-09 17:04:12,606 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 12:05:05] 2026-02-09 17:04:12,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 12:05:05] 2026-02-09 17:04:12,607 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 12:05:05] 2026-02-09 17:04:12,607 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 12:05:05] 2026-02-09 17:04:12,609 | INFO     | fitting pss+swap vs Time
[2026-02-09 12:05:05] 2026-02-09 17:04:12,610 | INFO     | sum of square deviations: 496597218.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,610 | INFO     | sum of deviations: 17997792701.999996
[2026-02-09 12:05:05] 2026-02-09 17:04:12,610 | INFO     | mean x: 1770653047.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,611 | INFO     | mean y: 2637655.4957264955
[2026-02-09 12:05:05] 2026-02-09 17:04:12,611 | INFO     | intersect: -64169784847.02151
[2026-02-09 12:05:05] 2026-02-09 17:04:12,611 | INFO     | chi2: 1.767719773564296
[2026-02-09 12:05:05] 2026-02-09 17:04:12,611 | INFO     | sum of square deviations: 435610028.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,612 | INFO     | sum of deviations: 17400568115.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,612 | INFO     | mean x: 1770652894.5
[2026-02-09 12:05:05] 2026-02-09 17:04:12,612 | INFO     | mean y: 2636161.2678571427
[2026-02-09 12:05:05] 2026-02-09 17:04:12,612 | INFO     | intersect: -70726604026.86014
[2026-02-09 12:05:05] 2026-02-09 17:04:12,613 | INFO     | chi2: 1.7701485624226203
[2026-02-09 12:05:05] 2026-02-09 17:04:12,613 | INFO     | current chi2=1.7701485624226203 (change=-0.13739671268297746 %)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,613 | INFO     | right removable region: 111
[2026-02-09 12:05:05] 2026-02-09 17:04:12,613 | INFO     | sum of square deviations: 435610028.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,614 | INFO     | sum of deviations: -3981065265.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,614 | INFO     | mean x: 1770653199.5
[2026-02-09 12:05:05] 2026-02-09 17:04:12,614 | INFO     | mean y: 2691783.25
[2026-02-09 12:05:05] 2026-02-09 17:04:12,614 | INFO     | intersect: 16184793883.274578
[2026-02-09 12:05:05] 2026-02-09 17:04:12,615 | INFO     | chi2: 0.08340890482435269
[2026-02-09 12:05:05] 2026-02-09 17:04:12,615 | INFO     | current chi2=0.08340890482435269 (change=95.28155389379543 %)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,615 | INFO     | sum of square deviations: 379832238.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | sum of deviations: -7139886459.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | mean x: 1770653352.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | mean y: 2700235.7757009347
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | intersect: 33286509841.025055
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | chi2: 0.025489898028098288
[2026-02-09 12:05:05] 2026-02-09 17:04:12,616 | INFO     | current chi2=0.025489898028098288 (change=69.43983609210984 %)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,617 | INFO     | sum of square deviations: 329031285.5
[2026-02-09 12:05:05] 2026-02-09 17:04:12,617 | INFO     | sum of deviations: -6910501052.500001
[2026-02-09 12:05:05] 2026-02-09 17:04:12,617 | INFO     | mean x: 1770653504.5
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | mean y: 2699523.81372549
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | intersect: 37190965338.31198
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | chi2: 0.023681955458518946
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | current chi2=0.023681955458518946 (change=7.092780707033006 %)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | left removable region: 30
[2026-02-09 12:05:05] 2026-02-09 17:04:12,618 | INFO     | sum of square deviations: 164765880.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,619 | INFO     | sum of deviations: -3129954713.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,619 | INFO     | mean x: 1770653779.0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,619 | INFO     | mean y: 2687483.864197531
[2026-02-09 12:05:05] 2026-02-09 17:04:12,619 | INFO     | intersect: 33638693559.104473
[2026-02-09 12:05:05] 2026-02-09 17:04:12,620 | INFO     | chi2: 0.021108205862343368
[2026-02-09 12:05:05] 2026-02-09 17:04:12,620 | INFO     | current memory leak: -19.00 B/s (using 81 data points, chi2=0.02)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,620 | INFO     | could have reported an average CPU frequency of 2637 MHz (7 samples)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,620 | INFO     | ..............................
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . Timing measurements:
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . get job = 0 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . initial setup = 5 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . payload setup = 4 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . stage-in = 0 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . payload execution = 7137 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . stage-out = 0 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | . log creation = 0 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,621 | INFO     | ..............................
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | 
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | job summary report
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | --------------------------------------------------
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | PanDA job id: 7008632440
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | task id: 48431096
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | errors: (none)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,874 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | pilot state: finished 
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | transexitcode: 0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | exeerrorcode: 0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | exeerrordiag: 
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | exitcode: 0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | exitmsg: OK
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | cpuconsumptiontime: 59093 s
[2026-02-09 12:05:05] 2026-02-09 17:04:12,875 | INFO     | nevents: 400
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | neventsw: 0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | pid: 3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | pgrp: 3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | corecount: 9
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | event service: False
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | sizes: {0: 2282880, 1: 2283086, 11: 2283114, 7146: 2310532, 7147: 2310531, 7148: 2319585, 7151: 2319769, 7153: 2319963}
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | --------------------------------------------------
[2026-02-09 12:05:05] 2026-02-09 17:04:12,876 | INFO     | 
[2026-02-09 12:05:05] 2026-02-09 17:04:12,877 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-09 12:05:05] 2026-02-09 17:04:12,895 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,895 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,896 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,897 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,898 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,898 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,898 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 12:05:05] 2026-02-09 17:04:12,898 | INFO     | job 7008632440 has completed (purged errors)
[2026-02-09 12:05:05] 2026-02-09 17:04:12,898 | INFO     | overall cleanup function is called
[2026-02-09 12:05:05] 2026-02-09 17:04:13,907 | INFO     | --- collectZombieJob: --- 10, [3391431]
[2026-02-09 12:05:05] 2026-02-09 17:04:13,907 | INFO     | zombie collector waiting for pid 3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:13,908 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 12:05:05] 2026-02-09 17:04:13,908 | INFO     | collected zombie processes
[2026-02-09 12:05:05] 2026-02-09 17:04:13,908 | INFO     | will attempt to kill all subprocesses of pid=3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:14,100 | INFO     | process IDs to be killed: [3391431] (in reverse order)
[2026-02-09 12:05:05] 2026-02-09 17:04:14,155 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 12:05:05] 2026-02-09 17:04:14,156 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 12:05:05] 2026-02-09 17:04:14,161 | INFO     | did not find any defunct processes belonging to 3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:14,166 | INFO     | did not find any defunct processes belonging to 3391431
[2026-02-09 12:05:05] 2026-02-09 17:04:14,166 | INFO     | ready for new job
[2026-02-09 12:05:05] 2026-02-09 17:04:14,166 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 12:05:05] 2026-02-09 17:04:14,168 | INFO     | **************************************
[2026-02-09 12:05:05] 2026-02-09 17:04:14,168 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 12:05:05] 2026-02-09 17:04:14,168 | INFO     | **************************************
[2026-02-09 12:05:05] 2026-02-09 17:04:14,168 | INFO     | 
[2026-02-09 12:05:05] 2026-02-09 17:04:14,170 | INFO     | architecture information:
[2026-02-09 12:05:05] 2026-02-09 17:04:14,171 | INFO     | executing command: cat /etc/os-release
[2026-02-09 12:05:05] 2026-02-09 17:04:14,182 | INFO     | cat /etc/os-release:
[2026-02-09 12:05:05] NAME="CentOS Linux"
[2026-02-09 12:05:05] VERSION="7 (Core)"
[2026-02-09 12:05:05] ID="centos"
[2026-02-09 12:05:05] ID_LIKE="rhel fedora"
[2026-02-09 12:05:05] VERSION_ID="7"
[2026-02-09 12:05:05] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 12:05:05] ANSI_COLOR="0;31"
[2026-02-09 12:05:05] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 12:05:05] HOME_URL="https://www.centos.org/"
[2026-02-09 12:05:05] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 12:05:05] 
[2026-02-09 12:05:05] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 12:05:05] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 12:05:05] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 12:05:05] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 12:05:05] 
[2026-02-09 12:05:05] 2026-02-09 17:04:14,182 | INFO     | **************************************
[2026-02-09 12:05:05] 2026-02-09 17:04:14,685 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-09 12:05:05] 2026-02-09 17:04:14,699 | INFO     | sufficient remaining disk space (38681968640 B)
[2026-02-09 12:05:05] 2026-02-09 17:04:14,699 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 12:05:05] 2026-02-09 17:04:14,699 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 12:05:05] 2026-02-09 17:04:14,699 | INFO     | update_server=False
[2026-02-09 12:05:05] 2026-02-09 17:04:14,700 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 12:05:05] 2026-02-09 17:04:14,700 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:05:05] 2026-02-09 17:04:14,700 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 12:05:05] 2026-02-09 17:04:14,896 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 12:05:05] 2026-02-09 17:04:14,896 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 12:05:05] 2026-02-09 17:04:14,897 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:05:05] 2026-02-09 17:04:14,897 | INFO     | will abort loop
[2026-02-09 12:05:05] 2026-02-09 17:04:14,979 | INFO     | all data control threads have been joined
[2026-02-09 12:05:05] 2026-02-09 17:04:15,660 | INFO     | all payload control threads have been joined
[2026-02-09 12:05:05] 2026-02-09 17:04:15,701 | INFO     | [job] queue monitor thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,704 | INFO     | [job] retrieve thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,727 | INFO     | all job control threads have been joined
[2026-02-09 12:05:05] 2026-02-09 17:04:15,806 | INFO     | [payload] validate_post thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,885 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,902 | INFO     | [job] job monitor thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,963 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:15,984 | INFO     | [data] control thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,139 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,298 | INFO     | [data] copytool_in thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,465 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,665 | INFO     | [payload] control thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,706 | INFO     | [data] copytool_out thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,733 | INFO     | [job] control thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,748 | INFO     | [payload] failed_post thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:16,921 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 12:05:05] 2026-02-09 17:04:16,960 | INFO     | [job] validate thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:20,927 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 12:05:05] 2026-02-09 17:04:42,105 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-09 12:05:05] 2026-02-09 17:04:45,386 | INFO     | PID=3386520 has CPU usage=4.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 12:05:05] 2026-02-09 17:04:45,387 | INFO     | .. there are 3 such processes running
[2026-02-09 12:05:05] 2026-02-09 17:04:45,387 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 12:05:05] 2026-02-09 17:04:45,388 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 12:05:05] 2026-02-09 17:04:45,388 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 12:05:05] 2026-02-09 17:04:59,913 | INFO     | [monitor] cgroup control has ended
[2026-02-09 12:05:05] 2026-02-09 17:05:00,401 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140034171361088)>', '<ExcThread(monitor, started 140033382151936)>']
[2026-02-09 12:05:05] 2026-02-09 17:05:00,458 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 12:05:05] 2026-02-09 17:05:00,458 | INFO     | [monitor] control thread has ended
[2026-02-09 12:05:05] 2026-02-09 17:05:05,426 | INFO     | all workflow threads have been joined
[2026-02-09 12:05:05] 2026-02-09 17:05:05,426 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 12:05:05] 2026-02-09 17:05:05,426 | INFO     | traces error code: 0
[2026-02-09 12:05:05] 2026-02-09 17:05:05,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 12:05:05] 2026-02-09 17:05:05,528 [wrapper] ==== pilot stdout END ====
[2026-02-09 12:05:05] 2026-02-09 17:05:05,530 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 12:05:05] 2026-02-09 17:05:05,533 [wrapper] pilotpid: 3386520
[2026-02-09 12:05:05] 2026-02-09 17:05:05,535 [wrapper] Pilot exit status: 0
[2026-02-09 12:05:05] 2026-02-09 17:05:05,544 [wrapper] pandaids: 7008632440
[2026-02-09 12:05:05] 2026-02-09 17:05:05,580 [wrapper] cleanup supervisor_pilot 3487865 3386521
[2026-02-09 12:05:05] 2026-02-09 17:05:05,582 [wrapper] Test setup, not cleaning
[2026-02-09 12:05:05] 2026-02-09 17:05:05,585 [wrapper] apfmon messages muted
[2026-02-09 12:05:05] 2026-02-09 17:05:05,587 [wrapper] ==== wrapper stdout END ====
[2026-02-09 12:05:05] 2026-02-09 17:05:05,589 [wrapper] ==== wrapper stderr END ====
[2026-02-09 12:05:05]  *** Error codes and diagnostics ***
[2026-02-09 12:05:05]     "exeErrorCode": 0,
[2026-02-09 12:05:05]     "exeErrorDiag": "",
[2026-02-09 12:05:05]     "pilotErrorCode": 0,
[2026-02-09 12:05:05]     "pilotErrorDiag": "",
[2026-02-09 12:05:05]  *** Listing of results directory ***
[2026-02-09 12:05:05] total 937148
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas    584627 Feb  9 00:33 pilot3.tar.gz
[2026-02-09 12:05:05] -rwx------. 1 boincer umatlas     36322 Feb  9 00:34 runpilot2-wrapper.sh
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas      5111 Feb  9 00:36 queuedata.json
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas       100 Feb  9 10:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 12:05:05] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  9 10:04 run_atlas
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas       105 Feb  9 10:04 job.xml
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas 678192447 Feb  9 10:04 EVNT.48431094._000705.pool.root.1
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  9 10:04 start_atlas.sh
[2026-02-09 12:05:05] drwxrwx--x. 2 boincer umatlas      4096 Feb  9 10:04 shared
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas    597970 Feb  9 10:04 input.tar.gz
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas         0 Feb  9 10:04 boinc_lockfile
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas      2556 Feb  9 10:04 pandaJob.out
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas   1009480 Feb  9 10:04 agis_schedconf.cvmfs.json
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas   1513144 Feb  9 10:04 agis_ddmendpoints.agis.ALL.json
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas       435 Feb  9 10:04 workernode_map.json
[2026-02-09 12:05:05] drwx------. 5 boincer umatlas      4096 Feb  9 10:04 pilot3
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas       530 Feb  9 12:03 boinc_task_state.xml
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas 274590110 Feb  9 12:03 HITS.48431096._014585.pool.root.1
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas      6531 Feb  9 12:03 init_data.xml
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas      1033 Feb  9 12:04 memory_monitor_summary.json
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas    420536 Feb  9 12:04 log.48431096._014585.job.log.tgz.1
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas      6376 Feb  9 12:04 heartbeat.json
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas        95 Feb  9 12:04 pilot_heartbeat.json
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas      5005 Feb  9 12:05 pilotlog.txt
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas      8192 Feb  9 12:05 boinc_mmap_file
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas        27 Feb  9 12:05 wrapper_checkpoint.txt
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas   1039771 Feb  9 12:05 log.48431096._014585.job.log.1
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas       357 Feb  9 12:05 output.list
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas       620 Feb  9 12:05 runtime_log
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas   1474560 Feb  9 12:05 result.tar.gz
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas       651 Feb  9 12:05 WcJMDmI6Y98n9Rq4apOajLDm4fhM0noT9bVooX4SDmwieKDmeo8VNn.diag
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas      8816 Feb  9 12:05 runtime_log.err
[2026-02-09 12:05:05] -rw-r--r--. 1 boincer umatlas     21047 Feb  9 12:05 stderr.txt
[2026-02-09 12:05:05] HITS file was successfully produced:
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas 274590110 Feb  9 12:03 shared/HITS.pool.root.1
[2026-02-09 12:05:05]  *** Contents of shared directory: ***
[2026-02-09 12:05:05] total 932504
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas 678192447 Feb  9 10:04 ATLAS.root_0
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas     15845 Feb  9 10:04 start_atlas.sh
[2026-02-09 12:05:05] -rw-r--r--. 2 boincer umatlas    597970 Feb  9 10:04 input.tar.gz
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas 274590110 Feb  9 12:03 HITS.pool.root.1
[2026-02-09 12:05:05] -rw-------. 1 boincer umatlas   1474560 Feb  9 12:05 result.tar.gz
12:05:07 (3382337): run_atlas exited; CPU time 59247.845296
12:05:07 (3382337): called boinc_finish(0)

</stderr_txt>
]]>

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