Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
16:37:20 (7522): wrapper (7.7.26015): starting
16:37:20 (7522): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 16:37:20] Arguments: --nthreads 8
[2026-02-09 16:37:20] Threads: 8
[2026-02-09 16:37:20] Checking for CVMFS
[2026-02-09 16:37:20] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 16:37:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 16:37:21] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 16:37:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 16:37:21] 2.11.0.0 11534 173857 78168 156054 0 188 2495656 4096001 917 130560 2 6934158 99.508 9311864 452 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-09 16:37:21] CVMFS is ok
[2026-02-09 16:37:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 16:37:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 16:37:21] Further information can be found at the LHC@home message board.
[2026-02-09 16:37:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 16:37:21] Checking for apptainer binary...
[2026-02-09 16:37:21] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-09 16:37:21] apptainer is not installed, using version from CVMFS
[2026-02-09 16:37:21] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 16:37:21] WARNING: Environment variable TMPDIR already has value [/tmp/job_11084852/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node376
[2026-02-09 16:37:21] apptainer works
[2026-02-09 16:37:21] Set ATHENA_PROC_NUMBER=8
[2026-02-09 16:37:21] Set ATHENA_CORE_NUMBER=8
[2026-02-09 16:37:21] Starting ATLAS job with PandaID=6995419254
[2026-02-09 16:37:21] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11084852/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 17:29:53]  *** The last 200 lines of the pilot log: ***
[2026-02-09 17:29:53]  filetype=log
[2026-02-09 17:29:53]  guid=71c42ed5-8526-4ecd-a48b-292a0c62276a
[2026-02-09 17:29:53]  inputddms=['NDGF-T1_DATADISK', 'CERN-PROD_DATADISK']
[2026-02-09 17:29:53]  is_altstaged=None
[2026-02-09 17:29:53]  is_tar=False
[2026-02-09 17:29:53]  lfn=log.48317892._006246.job.log.tgz.1
[2026-02-09 17:29:53]  mtime=0
[2026-02-09 17:29:53]  protocol_id=None
[2026-02-09 17:29:53]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-09 17:29:53]  replicas=None
[2026-02-09 17:29:53]  scope=mc23_13p6TeV
[2026-02-09 17:29:53]  status=None
[2026-02-09 17:29:53]  status_code=0
[2026-02-09 17:29:53]  storage_token=
[2026-02-09 17:29:53]  surl=/tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/log.48317892._006246.job.log.tgz.1
[2026-02-09 17:29:53]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/da/log.48317892._006246.job.log.tgz.1
[2026-02-09 17:29:53]  workdir=None
[2026-02-09 17:29:53] ]
[2026-02-09 17:29:53] 2026-02-09 16:29:18,402 | INFO     | transferring file log.48317892._006246.job.log.tgz.1 from /tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/log.48317892._006246.job.log.tgz.1 to /tmp/j
[2026-02-09 17:29:53] 2026-02-09 16:29:18,402 | INFO     | executing command: /usr/bin/env mv /tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/log.48317892._006246.job.log.tgz.1 /tmp/job_11084852/atlas/pilot/sl
[2026-02-09 17:29:53] 2026-02-09 16:29:18,411 | INFO     | adding to output.list: log.48317892._006246.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/75/da/log.48317892._006246.job.log.tg
[2026-02-09 17:29:53] 2026-02-09 16:29:18,411 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-09 17:29:53] 2026-02-09 16:29:18,411 | INFO     | summary of transferred files:
[2026-02-09 17:29:53] 2026-02-09 16:29:18,412 | INFO     |  -- lfn=log.48317892._006246.job.log.tgz.1, status_code=0, status=transferred
[2026-02-09 17:29:53] 2026-02-09 16:29:18,412 | INFO     | stage-out finished correctly
[2026-02-09 17:29:53] 2026-02-09 16:29:19,615 | WARNING  | process 18310 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 17:29:53] 2026-02-09 16:29:19,615 | INFO     | using path: /tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 17:29:53] 2026-02-09 16:29:19,718 | INFO     | number of running child processes to parent process 18310: 1
[2026-02-09 17:29:53] 2026-02-09 16:29:19,718 | INFO     | maximum number of monitored processes: 6
[2026-02-09 17:29:53] 2026-02-09 16:29:19,877 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-09 17:29:53] 2026-02-09 16:29:20,064 | INFO     | time since job start (3113s) is within the limit (349056.0s)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,471 | INFO     | job 6995419254 has state=finished
[2026-02-09 17:29:53] 2026-02-09 16:29:21,471 | INFO     | preparing for final server update for job 6995419254 in state='finished'
[2026-02-09 17:29:53] 2026-02-09 16:29:21,471 | INFO     | reading metadata from: /tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/jobReport.json
[2026-02-09 17:29:53] 2026-02-09 16:29:21,472 | INFO     | added worker_node to metadata from /tmp/job_11084852/atlas/pilot/slots/0/workernode_map.json
[2026-02-09 17:29:53] 2026-02-09 16:29:21,473 | INFO     | this job has now completed (state=finished)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,473 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,473 | INFO     | log transfer has been attempted: DONE
[2026-02-09 17:29:53] 2026-02-09 16:29:21,473 | INFO     | job 6995419254 has finished - writing final server update
[2026-02-09 17:29:53] 2026-02-09 16:29:21,473 | INFO     | total number of processed events: 400 (read)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | INFO     | using path: /tmp/job_11084852/atlas/pilot/slots/0/PanDA_Pilot-6995419254/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | INFO     | extracted standard info from prmon json
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 17:29:53] 2026-02-09 16:29:21,490 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | fitting pss+swap vs Time
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | sum of square deviations: 26400495.0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | sum of deviations: -1632877432.4999995
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | mean x: 1770653079.5
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | mean y: 2578073.8863636362
[2026-02-09 17:29:53] 2026-02-09 16:29:21,491 | INFO     | intersect: 109517928233.12306
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | chi2: 0.021221742495180138
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | current memory leak: -61.85 B/s (using 44 data points, chi2=0.02)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | could have reported an average CPU frequency of 2490 MHz (5 samples)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | ..............................
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . Timing measurements:
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . get job = 0 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . initial setup = 2 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . payload setup = 2 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . stage-in = 0 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . payload execution = 3093 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . stage-out = 0 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | . log creation = 0 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,492 | INFO     | ..............................
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | 
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | job summary report
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | --------------------------------------------------
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | PanDA job id: 6995419254
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | task id: 48317892
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | errors: (none)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | pilot state: finished 
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | transexitcode: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | exeerrorcode: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,806 | INFO     | exeerrordiag: 
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | exitcode: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | exitmsg: OK
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | cpuconsumptiontime: 22318 s
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | nevents: 400
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | neventsw: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | pid: 18310
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | pgrp: 18310
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | corecount: 8
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | event service: False
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | sizes: {0: 2282561, 1: 2283189, 11: 2283189, 3100: 2317762, 3102: 2317762, 3103: 2317988}
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | --------------------------------------------------
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | 
[2026-02-09 17:29:53] 2026-02-09 16:29:21,807 | INFO     | executing command: ls -lF /tmp/job_11084852/atlas/pilot/slots/0
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,817 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | job 6995419254 has completed (purged errors)
[2026-02-09 17:29:53] 2026-02-09 16:29:21,818 | INFO     | overall cleanup function is called
[2026-02-09 17:29:53] 2026-02-09 16:29:22,824 | INFO     | --- collectZombieJob: --- 10, [18310]
[2026-02-09 17:29:53] 2026-02-09 16:29:22,824 | INFO     | zombie collector waiting for pid 18310
[2026-02-09 17:29:53] 2026-02-09 16:29:22,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 17:29:53] 2026-02-09 16:29:22,824 | INFO     | collected zombie processes
[2026-02-09 17:29:53] 2026-02-09 16:29:22,824 | INFO     | will attempt to kill all subprocesses of pid=18310
[2026-02-09 17:29:53] 2026-02-09 16:29:22,927 | INFO     | process IDs to be killed: [18310] (in reverse order)
[2026-02-09 17:29:53] 2026-02-09 16:29:22,964 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 17:29:53] 2026-02-09 16:29:22,965 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 17:29:53] 2026-02-09 16:29:22,970 | INFO     | did not find any defunct processes belonging to 18310
[2026-02-09 17:29:53] 2026-02-09 16:29:22,973 | INFO     | did not find any defunct processes belonging to 18310
[2026-02-09 17:29:53] 2026-02-09 16:29:22,973 | INFO     | ready for new job
[2026-02-09 17:29:53] 2026-02-09 16:29:22,973 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 17:29:53] 2026-02-09 16:29:22,974 | INFO     | **************************************
[2026-02-09 17:29:53] 2026-02-09 16:29:22,974 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-09 17:29:53] 2026-02-09 16:29:22,974 | INFO     | **************************************
[2026-02-09 17:29:53] 2026-02-09 16:29:22,974 | INFO     | 
[2026-02-09 17:29:53] 2026-02-09 16:29:22,988 | INFO     | architecture information:
[2026-02-09 17:29:53] 2026-02-09 16:29:22,988 | INFO     | executing command: cat /etc/os-release
[2026-02-09 17:29:53] 2026-02-09 16:29:22,994 | INFO     | cat /etc/os-release:
[2026-02-09 17:29:53] NAME="CentOS Linux"
[2026-02-09 17:29:53] VERSION="7 (Core)"
[2026-02-09 17:29:53] ID="centos"
[2026-02-09 17:29:53] ID_LIKE="rhel fedora"
[2026-02-09 17:29:53] VERSION_ID="7"
[2026-02-09 17:29:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 17:29:53] ANSI_COLOR="0;31"
[2026-02-09 17:29:53] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 17:29:53] HOME_URL="https://www.centos.org/"
[2026-02-09 17:29:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 17:29:53] 
[2026-02-09 17:29:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 17:29:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 17:29:53] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 17:29:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 17:29:53] 
[2026-02-09 17:29:53] 2026-02-09 16:29:22,994 | INFO     | **************************************
[2026-02-09 17:29:53] 2026-02-09 16:29:23,497 | INFO     | executing command: df -mP /tmp/job_11084852/atlas/pilot/slots/0
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | INFO     | sufficient remaining disk space (220781871104 B)
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | INFO     | update_server=False
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 17:29:53] 2026-02-09 16:29:23,502 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 17:29:53] 2026-02-09 16:29:23,503 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 17:29:53] 2026-02-09 16:29:23,503 | INFO     | aborting loop
[2026-02-09 17:29:53] 2026-02-09 16:29:23,854 | INFO     | all job control threads have been joined
[2026-02-09 17:29:53] 2026-02-09 16:29:23,968 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 17:29:53] 2026-02-09 16:29:24,036 | INFO     | all payload control threads have been joined
[2026-02-09 17:29:53] 2026-02-09 16:29:24,136 | INFO     | all data control threads have been joined
[2026-02-09 17:29:53] 2026-02-09 16:29:24,507 | INFO     | [job] retrieve thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,508 | INFO     | [job] job monitor thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,508 | INFO     | [job] queue monitor thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,537 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,646 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,746 | INFO     | [job] validate thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,746 | INFO     | [data] copytool_in thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:24,859 | INFO     | [job] control thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,014 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,042 | INFO     | [payload] control thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,141 | INFO     | [data] control thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,146 | INFO     | [payload] failed_post thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,404 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,456 | INFO     | [payload] validate_post thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:25,931 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 17:29:53] 2026-02-09 16:29:25,973 | INFO     | [data] copytool_out thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:29,937 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 17:29:53] 2026-02-09 16:29:32,235 | INFO     | [monitor] cgroup control has ended
[2026-02-09 17:29:53] 2026-02-09 16:29:34,264 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456063190784)>']
[2026-02-09 17:29:53] 2026-02-09 16:29:39,289 | INFO     | all workflow threads have been joined
[2026-02-09 17:29:53] 2026-02-09 16:29:39,290 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 17:29:53] 2026-02-09 16:29:39,290 | INFO     | traces error code: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:39,290 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | INFO     | PID=12373 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | INFO     | .. there are 6 such processes running
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 17:29:53] 2026-02-09 16:29:53,249 | INFO     | [monitor] control thread has ended
[2026-02-09 17:29:53] 2026-02-09 16:29:53,301 [wrapper] ==== pilot stdout END ====
[2026-02-09 17:29:53] 2026-02-09 16:29:53,302 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 17:29:53] 2026-02-09 16:29:53,303 [wrapper] pilotpid: 12373
[2026-02-09 17:29:53] 2026-02-09 16:29:53,304 [wrapper] Pilot exit status: 0
[2026-02-09 17:29:53] 2026-02-09 16:29:53,309 [wrapper] pandaids: 6995419254
[2026-02-09 17:29:53] 2026-02-09 16:29:53,332 [wrapper] cleanup supervisor_pilot 16671 12374
[2026-02-09 17:29:53] 2026-02-09 16:29:53,334 [wrapper] Test setup, not cleaning
[2026-02-09 17:29:53] 2026-02-09 16:29:53,335 [wrapper] apfmon messages muted
[2026-02-09 17:29:53] 2026-02-09 16:29:53,336 [wrapper] ==== wrapper stdout END ====
[2026-02-09 17:29:53] 2026-02-09 16:29:53,337 [wrapper] ==== wrapper stderr END ====
[2026-02-09 17:29:53]  *** Error codes and diagnostics ***
[2026-02-09 17:29:53]     "exeErrorCode": 0,
[2026-02-09 17:29:53]     "exeErrorDiag": "",
[2026-02-09 17:29:53]     "pilotErrorCode": 0,
[2026-02-09 17:29:53]     "pilotErrorDiag": "",
[2026-02-09 17:29:53]  *** Listing of results directory ***
[2026-02-09 17:29:53] total 671568
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user    584422 Feb  1 09:53 pilot3.tar.gz
[2026-02-09 17:29:53] -rwx------ 1 mf493845 unix-user     36322 Feb  1 09:53 runpilot2-wrapper.sh
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      5111 Feb  1 09:53 queuedata.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       100 Feb  9 14:32 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 17:29:53] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  9 14:32 run_atlas
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       105 Feb  9 14:32 job.xml
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  9 16:37 start_atlas.sh
[2026-02-09 17:29:53] drwxrwx--x 2 mf493845 unix-user       100 Feb  9 16:37 shared
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user    597750 Feb  9 16:37 input.tar.gz
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      6391 Feb  9 16:37 init_data.xml
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user 490607178 Feb  9 16:37 EVNT.48317889._000122.pool.root.1
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user         0 Feb  9 16:37 boinc_setup_complete
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      8192 Feb  9 16:37 boinc_mmap_file
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user         0 Feb  9 16:37 boinc_lockfile
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      2520 Feb  9 16:37 pandaJob.out
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user   1009480 Feb  9 16:37 agis_schedconf.cvmfs.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user   1513144 Feb  9 16:37 agis_ddmendpoints.agis.ALL.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       420 Feb  9 16:37 workernode_map.json
[2026-02-09 17:29:53] drwx------ 5 mf493845 unix-user       440 Feb  9 16:37 pilot3
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user 191588535 Feb  9 17:28 HITS.48317892._006246.pool.root.1
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user        95 Feb  9 17:29 pilot_heartbeat.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      1014 Feb  9 17:29 memory_monitor_summary.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user    297954 Feb  9 17:29 log.48317892._006246.job.log.tgz.1
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      6312 Feb  9 17:29 heartbeat.json
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       820 Feb  9 17:29 pilotlog.txt
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user    490002 Feb  9 17:29 log.48317892._006246.job.log.1
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       357 Feb  9 17:29 output.list
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       620 Feb  9 17:29 runtime_log
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user    808960 Feb  9 17:29 result.tar.gz
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user      9219 Feb  9 17:29 runtime_log.err
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user       642 Feb  9 17:29 28SNDm2Ni68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLsPKDmQTiBTm.diag
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user     21833 Feb  9 17:29 stderr.txt
[2026-02-09 17:29:53] HITS file was successfully produced:
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user 191588535 Feb  9 17:28 shared/HITS.pool.root.1
[2026-02-09 17:29:53]  *** Contents of shared directory: ***
[2026-02-09 17:29:53] total 667604
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  9 16:37 start_atlas.sh
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user    597750 Feb  9 16:37 input.tar.gz
[2026-02-09 17:29:53] -rw-r--r-- 2 mf493845 unix-user 490607178 Feb  9 16:37 ATLAS.root_0
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user 191588535 Feb  9 17:28 HITS.pool.root.1
[2026-02-09 17:29:53] -rw------- 1 mf493845 unix-user    808960 Feb  9 17:29 result.tar.gz
17:29:54 (7522): run_atlas exited; CPU time 22354.589345
17:29:54 (7522): called boinc_finish(0)

</stderr_txt>
]]>

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