Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
09:43:26 (3403637): wrapper (7.7.26015): starting
09:43:26 (3403637): wrapper: running run_atlas (--nthreads 3)
[2026-02-12 09:43:26] Arguments: --nthreads 3
[2026-02-12 09:43:26] Threads: 3
[2026-02-12 09:43:26] Checking for CVMFS
[2026-02-12 09:43:26] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-12 09:43:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-12 09:43:27] Running cvmfs_config stat atlas.cern.ch
[2026-02-12 09:43:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-12 09:43:27] 2.12.7.0 18962 9309 68568 156147 4 50 3893305 6144000 3668 130560 0 258240 99.9911 9833 4522 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.46:3128 1
[2026-02-12 09:43:27] CVMFS is ok
[2026-02-12 09:43:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-12 09:43:27] Checking for apptainer binary...
[2026-02-12 09:43:27] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-12 09:43:27] Running /usr/bin/apptainer --version
[2026-02-12 09:43:27] apptainer version 1.4.5
[2026-02-12 09:43:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-12 09:43:28] Ryzen5
[2026-02-12 09:43:28] apptainer works
[2026-02-12 09:43:28] Set ATHENA_PROC_NUMBER=3
[2026-02-12 09:43:28] Set ATHENA_CORE_NUMBER=3
[2026-02-12 09:43:28] Starting ATLAS job with PandaID=7008631667
[2026-02-12 09:43:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-12 14:10:12]  *** The last 200 lines of the pilot log: ***
[2026-02-12 14:10:12] 2026-02-12 13:09:19,761 | INFO     | extracted standard info from prmon json
[2026-02-12 14:10:12] 2026-02-12 13:09:19,761 | INFO     | extracted standard memory fields from prmon json
[2026-02-12 14:10:12] 2026-02-12 13:09:19,761 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-12 14:10:12] 2026-02-12 13:09:19,761 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-12 14:10:12] 2026-02-12 13:09:19,761 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-12 14:10:12] 2026-02-12 13:09:19,764 | INFO     | fitting pss+swap vs Time
[2026-02-12 14:10:12] 2026-02-12 13:09:19,765 | INFO     | sum of square deviations: 5513070810.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,766 | INFO     | sum of deviations: 33186029226.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,766 | INFO     | mean x: 1770893773.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,766 | INFO     | mean y: 2327713.4827586208
[2026-02-12 14:10:12] 2026-02-12 13:09:19,766 | INFO     | intersect: -10657599309.460632
[2026-02-12 14:10:12] 2026-02-12 13:09:19,766 | INFO     | chi2: 1.072540767349636
[2026-02-12 14:10:12] 2026-02-12 13:09:19,767 | INFO     | sum of square deviations: 5202255680.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,768 | INFO     | sum of deviations: 32149230922.5
[2026-02-12 14:10:12] 2026-02-12 13:09:19,768 | INFO     | mean x: 1770893620.5
[2026-02-12 14:10:12] 2026-02-12 13:09:19,768 | INFO     | mean y: 2327204.68359375
[2026-02-12 14:10:12] 2026-02-12 13:09:19,768 | INFO     | intersect: -10941553958.926685
[2026-02-12 14:10:12] 2026-02-12 13:09:19,768 | INFO     | chi2: 1.0728613394031565
[2026-02-12 14:10:12] 2026-02-12 13:09:19,769 | INFO     | current chi2=1.0728613394031565 (change=-0.029889032033029138 %)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,769 | INFO     | right removable region: 255
[2026-02-12 14:10:12] 2026-02-12 13:09:19,769 | INFO     | sum of square deviations: 5202255680.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,770 | INFO     | sum of deviations: 12696785952.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,770 | INFO     | mean x: 1770893925.5
[2026-02-12 14:10:12] 2026-02-12 13:09:19,770 | INFO     | mean y: 2337605.984375
[2026-02-12 14:10:12] 2026-02-12 13:09:19,770 | INFO     | intersect: -4319760825.704114
[2026-02-12 14:10:12] 2026-02-12 13:09:19,771 | INFO     | chi2: 0.003795484864813209
[2026-02-12 14:10:12] 2026-02-12 13:09:19,771 | INFO     | current chi2=0.003795484864813209 (change=99.64612208874892 %)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,771 | INFO     | sum of square deviations: 4903347750.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,772 | INFO     | sum of deviations: 12901991416.000036
[2026-02-12 14:10:12] 2026-02-12 13:09:19,772 | INFO     | mean x: 1770894078.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,772 | INFO     | mean y: 2337505.848605578
[2026-02-12 14:10:12] 2026-02-12 13:09:19,772 | INFO     | intersect: -4657348357.345841
[2026-02-12 14:10:12] 2026-02-12 13:09:19,773 | INFO     | chi2: 0.00260987439223538
[2026-02-12 14:10:12] 2026-02-12 13:09:19,773 | INFO     | current chi2=0.00260987439223538 (change=31.237391658948894 %)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,773 | INFO     | sum of square deviations: 4616114457.5
[2026-02-12 14:10:12] 2026-02-12 13:09:19,774 | INFO     | sum of deviations: 12129803121.499998
[2026-02-12 14:10:12] 2026-02-12 13:09:19,774 | INFO     | mean x: 1770894230.5
[2026-02-12 14:10:12] 2026-02-12 13:09:19,774 | INFO     | mean y: 2337915.5569105693
[2026-02-12 14:10:12] 2026-02-12 13:09:19,774 | INFO     | intersect: -4651055877.585455
[2026-02-12 14:10:12] 2026-02-12 13:09:19,775 | INFO     | chi2: 0.002606901680529717
[2026-02-12 14:10:12] 2026-02-12 13:09:19,775 | INFO     | current chi2=0.002606901680529717 (change=0.11390248184001521 %)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,775 | INFO     | left removable region: 30
[2026-02-12 14:10:12] 2026-02-12 13:09:19,775 | INFO     | sum of square deviations: 3531973200.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,776 | INFO     | sum of deviations: 9950158166.999998
[2026-02-12 14:10:12] 2026-02-12 13:09:19,776 | INFO     | mean x: 1770894505.0
[2026-02-12 14:10:12] 2026-02-12 13:09:19,776 | INFO     | mean y: 2338435.355555556
[2026-02-12 14:10:12] 2026-02-12 13:09:19,776 | INFO     | intersect: -4986567035.903731
[2026-02-12 14:10:12] 2026-02-12 13:09:19,776 | INFO     | chi2: 0.0019157675352807755
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | current memory leak: 2.82 B/s (using 225 data points, chi2=0.00)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | could have reported an average CPU frequency of 3842 MHz (12 samples)
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | ..............................
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . Timing measurements:
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . get job = 0 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . initial setup = 4 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . payload setup = 5 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . stage-in = 0 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . payload execution = 15915 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . stage-out = 0 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | . log creation = 0 s
[2026-02-12 14:10:12] 2026-02-12 13:09:19,777 | INFO     | ..............................
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | 
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | job summary report
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | --------------------------------------------------
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | PanDA job id: 7008631667
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | task id: 48431096
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | errors: (none)
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | pilot state: finished 
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | transexitcode: 0
[2026-02-12 14:10:12] 2026-02-12 13:09:20,092 | INFO     | exeerrorcode: 0
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | exeerrordiag: 
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | exitcode: 0
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | exitmsg: OK
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | cpuconsumptiontime: 41310 s
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | nevents: 400
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | neventsw: 0
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | pid: 3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | pgrp: 3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | corecount: 3
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | event service: False
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | sizes: {0: 2281786, 1: 2282247, 11: 2282247, 15924: 2313731, 15927: 2322797, 15928: 2322935}
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | --------------------------------------------------
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | 
[2026-02-12 14:10:12] 2026-02-12 13:09:20,093 | INFO     | executing command: ls -lF /var/lib/boinc/boinc/slots/1
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,112 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | job 7008631667 has completed (purged errors)
[2026-02-12 14:10:12] 2026-02-12 13:09:20,113 | INFO     | overall cleanup function is called
[2026-02-12 14:10:12] 2026-02-12 13:09:21,124 | INFO     | --- collectZombieJob: --- 10, [3413052]
[2026-02-12 14:10:12] 2026-02-12 13:09:21,124 | INFO     | zombie collector waiting for pid 3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:21,124 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-12 14:10:12] 2026-02-12 13:09:21,124 | INFO     | collected zombie processes
[2026-02-12 14:10:12] 2026-02-12 13:09:21,124 | INFO     | will attempt to kill all subprocesses of pid=3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:21,238 | INFO     | process IDs to be killed: [3413052] (in reverse order)
[2026-02-12 14:10:12] 2026-02-12 13:09:21,288 | WARNING  | found no corresponding commands to process id(s)
[2026-02-12 14:10:12] 2026-02-12 13:09:21,288 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-12 14:10:12] 2026-02-12 13:09:21,291 | INFO     | did not find any defunct processes belonging to 3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:21,294 | INFO     | did not find any defunct processes belonging to 3413052
[2026-02-12 14:10:12] 2026-02-12 13:09:21,294 | INFO     | ready for new job
[2026-02-12 14:10:12] 2026-02-12 13:09:21,295 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-12 14:10:12] 2026-02-12 13:09:21,296 | INFO     | **************************************
[2026-02-12 14:10:12] 2026-02-12 13:09:21,296 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-12 14:10:12] 2026-02-12 13:09:21,296 | INFO     | **************************************
[2026-02-12 14:10:12] 2026-02-12 13:09:21,297 | INFO     | 
[2026-02-12 14:10:12] 2026-02-12 13:09:21,297 | INFO     | architecture information:
[2026-02-12 14:10:12] 2026-02-12 13:09:21,297 | INFO     | executing command: cat /etc/os-release
[2026-02-12 14:10:12] 2026-02-12 13:09:21,320 | INFO     | cat /etc/os-release:
[2026-02-12 14:10:12] NAME="CentOS Linux"
[2026-02-12 14:10:12] VERSION="7 (Core)"
[2026-02-12 14:10:12] ID="centos"
[2026-02-12 14:10:12] ID_LIKE="rhel fedora"
[2026-02-12 14:10:12] VERSION_ID="7"
[2026-02-12 14:10:12] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-12 14:10:12] ANSI_COLOR="0;31"
[2026-02-12 14:10:12] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-12 14:10:12] HOME_URL="https://www.centos.org/"
[2026-02-12 14:10:12] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-12 14:10:12] 
[2026-02-12 14:10:12] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-12 14:10:12] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-12 14:10:12] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-12 14:10:12] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-12 14:10:12] 
[2026-02-12 14:10:12] 2026-02-12 13:09:21,321 | INFO     | **************************************
[2026-02-12 14:10:12] 2026-02-12 13:09:21,825 | INFO     | executing command: df -mP /var/lib/boinc/boinc/slots/1
[2026-02-12 14:10:12] 2026-02-12 13:09:21,840 | INFO     | sufficient remaining disk space (360958656512 B)
[2026-02-12 14:10:12] 2026-02-12 13:09:21,841 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-12 14:10:12] 2026-02-12 13:09:21,841 | INFO     | current server update state: UPDATING_FINAL
[2026-02-12 14:10:12] 2026-02-12 13:09:21,841 | INFO     | update_server=False
[2026-02-12 14:10:12] 2026-02-12 13:09:21,841 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-12 14:10:12] 2026-02-12 13:09:21,841 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-12 14:10:12] 2026-02-12 13:09:22,048 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-12 14:10:12] 2026-02-12 13:09:22,192 | INFO     | all data control threads have been joined
[2026-02-12 14:10:12] 2026-02-12 13:09:22,566 | WARNING  | process 3413052 can no longer be monitored (due to stat problems) - aborting
[2026-02-12 14:10:12] 2026-02-12 13:09:22,720 | INFO     | using path: /var/lib/boinc/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2026-02-12 14:10:12] 2026-02-12 13:09:22,824 | INFO     | number of running child processes to parent process 3413052: 1
[2026-02-12 14:10:12] 2026-02-12 13:09:22,825 | INFO     | maximum number of monitored processes: 6
[2026-02-12 14:10:12] 2026-02-12 13:09:22,825 | INFO     | aborting job monitoring since job object (job id=7008631667) has expired
[2026-02-12 14:10:12] 2026-02-12 13:09:22,825 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-12 14:10:12] 2026-02-12 13:09:22,825 | INFO     | will abort loop
[2026-02-12 14:10:12] 2026-02-12 13:09:22,838 | INFO     | all payload control threads have been joined
[2026-02-12 14:10:12] 2026-02-12 13:09:22,845 | INFO     | [job] retrieve thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:22,845 | INFO     | [job] queue monitor thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,078 | INFO     | [payload] validate_pre thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,079 | INFO     | [payload] failed_post thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,149 | INFO     | [data] copytool_in thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,195 | INFO     | [data] control thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,215 | INFO     | all job control threads have been joined
[2026-02-12 14:10:12] 2026-02-12 13:09:23,565 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,749 | INFO     | [payload] execute_payloads thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,829 | INFO     | [job] job monitor thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:23,842 | INFO     | [payload] control thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:24,052 | INFO     | [data] copytool_out thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:24,112 | INFO     | [job] validate thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:24,207 | INFO     | [job] create_data_payload thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:24,212 | INFO     | [payload] validate_post thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:24,218 | INFO     | [job] control thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:25,108 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-12 14:10:12] 2026-02-12 13:09:29,112 | INFO     | [data] queue_monitor thread has finished
[2026-02-12 14:10:12] 2026-02-12 13:09:51,892 | INFO     | PID=3408211 has CPU usage=3.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-12 14:10:12] 2026-02-12 13:09:51,892 | INFO     | .. there are 5 such processes running
[2026-02-12 14:10:12] 2026-02-12 13:09:51,893 | INFO     | found 0 job(s) in 20 queues
[2026-02-12 14:10:12] 2026-02-12 13:09:51,893 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-12 14:10:12] 2026-02-12 13:09:51,893 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-12 14:10:12] 2026-02-12 13:10:07,178 | INFO     | [monitor] cgroup control has ended
[2026-02-12 14:10:12] 2026-02-12 13:10:07,378 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139908199487296)>', '<ExcThread(monitor, started 139907343312640)>']
[2026-02-12 14:10:12] 2026-02-12 13:10:07,955 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-12 14:10:12] 2026-02-12 13:10:07,955 | INFO     | [monitor] control thread has ended
[2026-02-12 14:10:12] 2026-02-12 13:10:12,402 | INFO     | all workflow threads have been joined
[2026-02-12 14:10:12] 2026-02-12 13:10:12,402 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-12 14:10:12] 2026-02-12 13:10:12,402 | INFO     | traces error code: 0
[2026-02-12 14:10:12] 2026-02-12 13:10:12,402 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-12 14:10:12] 2026-02-12 13:10:12,558 [wrapper] ==== pilot stdout END ====
[2026-02-12 14:10:12] 2026-02-12 13:10:12,560 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-12 14:10:12] 2026-02-12 13:10:12,562 [wrapper] pilotpid: 3408211
[2026-02-12 14:10:12] 2026-02-12 13:10:12,564 [wrapper] Pilot exit status: 0
[2026-02-12 14:10:12] 2026-02-12 13:10:12,574 [wrapper] pandaids: 7008631667
[2026-02-12 14:10:12] 2026-02-12 13:10:12,601 [wrapper] cleanup supervisor_pilot 3845789 3408212
[2026-02-12 14:10:12] 2026-02-12 13:10:12,603 [wrapper] Test setup, not cleaning
[2026-02-12 14:10:12] 2026-02-12 13:10:12,605 [wrapper] apfmon messages muted
[2026-02-12 14:10:12] 2026-02-12 13:10:12,607 [wrapper] ==== wrapper stdout END ====
[2026-02-12 14:10:12] 2026-02-12 13:10:12,609 [wrapper] ==== wrapper stderr END ====
[2026-02-12 14:10:12]  *** Error codes and diagnostics ***
[2026-02-12 14:10:12]     "exeErrorCode": 0,
[2026-02-12 14:10:12]     "exeErrorDiag": "",
[2026-02-12 14:10:12]     "pilotErrorCode": 0,
[2026-02-12 14:10:12]     "pilotErrorDiag": "",
[2026-02-12 14:10:12]  *** Listing of results directory ***
[2026-02-12 14:10:12] insgesamt 946952
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc    584627  9. Feb 06:33 pilot3.tar.gz
[2026-02-12 14:10:12] -rwx------ 1 boinc boinc     36322  9. Feb 06:36 runpilot2-wrapper.sh
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc      5111  9. Feb 06:38 queuedata.json
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc       100 12. Feb 09:43 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-12 14:10:12] -rwxr-xr-x 1 boinc boinc      7986 12. Feb 09:43 run_atlas
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc       105 12. Feb 09:43 job.xml
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc 675765444 12. Feb 09:43 EVNT.48431094._000694.pool.root.1
[2026-02-12 14:10:12] drwxrwx--x 2 boinc boinc      4096 12. Feb 09:43 shared
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc    597956 12. Feb 09:43 input.tar.gz
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc     15845 12. Feb 09:43 start_atlas.sh
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc      7072 12. Feb 09:43 init_data.xml
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc         0 12. Feb 09:43 boinc_setup_complete
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc         0 12. Feb 09:43 boinc_lockfile
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc      2555 12. Feb 09:43 pandaJob.out
[2026-02-12 14:10:12] -rw------- 1 boinc boinc        52 12. Feb 09:43 setup.sh.local
[2026-02-12 14:10:12] -rw------- 1 boinc boinc   1000188 12. Feb 09:43 agis_schedconf.cvmfs.json
[2026-02-12 14:10:12] -rw------- 1 boinc boinc       413 12. Feb 09:43 workernode_map.json
[2026-02-12 14:10:12] drwx------ 5 boinc boinc      4096 12. Feb 09:43 pilot3
[2026-02-12 14:10:12] -rw------- 1 boinc boinc 284588549 12. Feb 14:08 HITS.48431096._014002.pool.root.1
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc       531 12. Feb 14:08 boinc_task_state.xml
[2026-02-12 14:10:12] -rw------- 1 boinc boinc      1021 12. Feb 14:09 memory_monitor_summary.json
[2026-02-12 14:10:12] -rw------- 1 boinc boinc   1512955 12. Feb 14:09 agis_ddmendpoints.agis.ALL.json
[2026-02-12 14:10:12] -rw------- 1 boinc boinc    411312 12. Feb 14:09 log.48431096._014002.job.log.tgz.1
[2026-02-12 14:10:12] -rw------- 1 boinc boinc      6266 12. Feb 14:09 heartbeat.json
[2026-02-12 14:10:12] -rw------- 1 boinc boinc        95 12. Feb 14:09 pilot_heartbeat.json
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc        28 12. Feb 14:10 wrapper_checkpoint.txt
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc      8192 12. Feb 14:10 boinc_mmap_file
[2026-02-12 14:10:12] -rw------- 1 boinc boinc      5353 12. Feb 14:10 pilotlog.txt
[2026-02-12 14:10:12] -rw------- 1 boinc boinc   2280464 12. Feb 14:10 log.48431096._014002.job.log.1
[2026-02-12 14:10:12] -rw------- 1 boinc boinc       357 12. Feb 14:10 output.list
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc       620 12. Feb 14:10 runtime_log
[2026-02-12 14:10:12] -rw------- 1 boinc boinc   2713600 12. Feb 14:10 result.tar.gz
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc      9377 12. Feb 14:10 runtime_log.err
[2026-02-12 14:10:12] -rw------- 1 boinc boinc       646 12. Feb 14:10 DhnLDm07Y98n9Rq4apOajLDm4fhM0noT9bVooX4SDmJneKDm7hKPTn.diag
[2026-02-12 14:10:12] -rw-r--r-- 1 boinc boinc     20769 12. Feb 14:10 stderr.txt
[2026-02-12 14:10:12] HITS file was successfully produced:
[2026-02-12 14:10:12] -rw------- 1 boinc boinc 284588549 12. Feb 14:08 shared/HITS.pool.root.1
[2026-02-12 14:10:12]  *** Contents of shared directory: ***
[2026-02-12 14:10:12] insgesamt 941108
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc 675765444 12. Feb 09:43 ATLAS.root_0
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc    597956 12. Feb 09:43 input.tar.gz
[2026-02-12 14:10:12] -rw-r--r-- 2 boinc boinc     15845 12. Feb 09:43 start_atlas.sh
[2026-02-12 14:10:12] -rw------- 1 boinc boinc 284588549 12. Feb 14:08 HITS.pool.root.1
[2026-02-12 14:10:12] -rw------- 1 boinc boinc   2713600 12. Feb 14:10 result.tar.gz
14:10:14 (3403637): run_atlas exited; CPU time 41511.514445
14:10:14 (3403637): called boinc_finish(0)

</stderr_txt>
]]>

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