Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
00:49:10 (437161): wrapper (7.7.26015): starting
00:49:10 (437161): wrapper: running run_atlas (--nthreads 4)
[2026-02-10 00:49:10] Arguments: --nthreads 4
[2026-02-10 00:49:10] Threads: 4
[2026-02-10 00:49:10] Checking for CVMFS
[2026-02-10 00:49:10] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-10 00:49:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-10 00:49:10] Running cvmfs_config stat atlas.cern.ch
[2026-02-10 00:49:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-10 00:49:10] 2.9.2.0 3731233 5305 95276 156069 1 50 25449816 36864000 0 130560 0 2521728 99.980 325459 2597 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-10 00:49:10] CVMFS is ok
[2026-02-10 00:49:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-10 00:49:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-10 00:49:10] Further information can be found at the LHC@home message board.
[2026-02-10 00:49:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-10 00:49:10] Checking for apptainer binary...
[2026-02-10 00:49:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-10 00:49:10] Running /usr/bin/apptainer --version
[2026-02-10 00:49:10] apptainer version 1.4.1-1.1
[2026-02-10 00:49:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-10 00:49:11] thA332a
[2026-02-10 00:49:11] apptainer works
[2026-02-10 00:49:11] Set ATHENA_PROC_NUMBER=4
[2026-02-10 00:49:11] Set ATHENA_CORE_NUMBER=4
[2026-02-10 00:49:11] Starting ATLAS job with PandaID=7008695146
[2026-02-10 00:49:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 02:32:37]  *** The last 200 lines of the pilot log: ***
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,456 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | job 7008695146 has completed (purged errors)
[2026-02-10 02:32:37] 2026-02-10 01:31:59,457 | INFO     | overall cleanup function is called
[2026-02-10 02:32:37] 2026-02-10 01:32:00,464 | INFO     | --- collectZombieJob: --- 10, [445774]
[2026-02-10 02:32:37] 2026-02-10 01:32:00,464 | INFO     | zombie collector waiting for pid 445774
[2026-02-10 02:32:37] 2026-02-10 01:32:00,464 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 02:32:37] 2026-02-10 01:32:00,464 | INFO     | collected zombie processes
[2026-02-10 02:32:37] 2026-02-10 01:32:00,464 | INFO     | will attempt to kill all subprocesses of pid=445774
[2026-02-10 02:32:37] 2026-02-10 01:32:00,507 | INFO     | process IDs to be killed: [445774] (in reverse order)
[2026-02-10 02:32:37] 2026-02-10 01:32:00,541 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 02:32:37] 2026-02-10 01:32:00,541 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 02:32:37] 2026-02-10 01:32:00,543 | INFO     | did not find any defunct processes belonging to 445774
[2026-02-10 02:32:37] 2026-02-10 01:32:00,544 | INFO     | did not find any defunct processes belonging to 445774
[2026-02-10 02:32:37] 2026-02-10 01:32:00,544 | INFO     | ready for new job
[2026-02-10 02:32:37] 2026-02-10 01:32:00,544 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 02:32:37] 2026-02-10 01:32:00,545 | INFO     | **************************************
[2026-02-10 02:32:37] 2026-02-10 01:32:00,545 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 02:32:37] 2026-02-10 01:32:00,545 | INFO     | **************************************
[2026-02-10 02:32:37] 2026-02-10 01:32:00,545 | INFO     | 
[2026-02-10 02:32:37] 2026-02-10 01:32:00,546 | INFO     | architecture information:
[2026-02-10 02:32:37] 2026-02-10 01:32:00,546 | INFO     | executing command: cat /etc/os-release
[2026-02-10 02:32:37] 2026-02-10 01:32:00,560 | INFO     | cat /etc/os-release:
[2026-02-10 02:32:37] NAME="CentOS Linux"
[2026-02-10 02:32:37] VERSION="7 (Core)"
[2026-02-10 02:32:37] ID="centos"
[2026-02-10 02:32:37] ID_LIKE="rhel fedora"
[2026-02-10 02:32:37] VERSION_ID="7"
[2026-02-10 02:32:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 02:32:37] ANSI_COLOR="0;31"
[2026-02-10 02:32:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 02:32:37] HOME_URL="https://www.centos.org/"
[2026-02-10 02:32:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 02:32:37] 
[2026-02-10 02:32:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 02:32:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 02:32:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 02:32:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 02:32:37] 
[2026-02-10 02:32:37] 2026-02-10 01:32:00,560 | INFO     | **************************************
[2026-02-10 02:32:37] 2026-02-10 01:32:01,064 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 02:32:37] 2026-02-10 01:32:01,081 | INFO     | sufficient remaining disk space (329767714816 B)
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | INFO     | update_server=False
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 02:32:37] 2026-02-10 01:32:01,082 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 02:32:37] 2026-02-10 01:32:01,083 | INFO     | aborting loop
[2026-02-10 02:32:37] 2026-02-10 01:32:01,483 | INFO     | all data control threads have been joined
[2026-02-10 02:32:37] 2026-02-10 01:32:02,087 | INFO     | [job] retrieve thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,088 | INFO     | [job] queue monitor thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,088 | INFO     | [job] job monitor thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,182 | INFO     | [data] copytool_in thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,264 | INFO     | [payload] validate_post thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,270 | INFO     | all job control threads have been joined
[2026-02-10 02:32:37] 2026-02-10 01:32:02,489 | INFO     | [data] control thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:02,567 | INFO     | all payload control threads have been joined
[2026-02-10 02:32:37] 2026-02-10 01:32:02,720 | INFO     | [payload] failed_post thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,089 | INFO     | [data] copytool_out thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,226 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,268 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,276 | INFO     | [job] control thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,368 | INFO     | [job] validate thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,457 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,467 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 02:32:37] 2026-02-10 01:32:03,530 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:03,573 | INFO     | [payload] control thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:07,474 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 02:32:37] 2026-02-10 01:32:31,102 | INFO     | [monitor] cgroup control has ended
[2026-02-10 02:32:37] 2026-02-10 01:32:32,628 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139670925190976)>', '<ExcThread(monitor, started 139669752755968)>']
[2026-02-10 02:32:37] 2026-02-10 01:32:33,254 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 02:32:37] 2026-02-10 01:32:33,254 | INFO     | [monitor] control thread has ended
[2026-02-10 02:32:37] 2026-02-10 01:32:37,654 | INFO     | all workflow threads have been joined
[2026-02-10 02:32:37] 2026-02-10 01:32:37,654 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 02:32:37] 2026-02-10 01:32:37,654 | INFO     | traces error code: 0
[2026-02-10 02:32:37] 2026-02-10 01:32:37,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 02:32:37] 2026-02-10 01:32:37,733 [wrapper] ==== pilot stdout END ====
[2026-02-10 02:32:37] 2026-02-10 01:32:37,737 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 02:32:37] 2026-02-10 01:32:37,741 [wrapper] pilotpid: 441275
[2026-02-10 02:32:37] 2026-02-10 01:32:37,745 [wrapper] Pilot exit status: 0
[2026-02-10 02:32:37] 2026-02-10 01:32:37,757 [wrapper] pandaids: 7008695146
[2026-02-10 02:32:37] 2026-02-10 01:32:37,779 [wrapper] cleanup supervisor_pilot  451253 441276
[2026-02-10 02:32:37] 2026-02-10 01:32:37,783 [wrapper] Test setup, not cleaning
[2026-02-10 02:32:37] 2026-02-10 01:32:37,786 [wrapper] apfmon messages muted
[2026-02-10 02:32:37] 2026-02-10 01:32:37,790 [wrapper] ==== wrapper stdout END ====
[2026-02-10 02:32:37] 2026-02-10 01:32:37,794 [wrapper] ==== wrapper stderr END ====
[2026-02-10 02:32:37]  *** Error codes and diagnostics ***
[2026-02-10 02:32:37]     "exeErrorCode": 0,
[2026-02-10 02:32:37]     "exeErrorDiag": "",
[2026-02-10 02:32:37]     "pilotErrorCode": 0,
[2026-02-10 02:32:37]     "pilotErrorDiag": "",
[2026-02-10 02:32:37]  *** Listing of results directory ***
[2026-02-10 02:32:37] total 943872
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc    584627 Feb  9 06:33 pilot3.tar.gz
[2026-02-10 02:32:37] -rwx------ 1 boinc boinc     36322 Feb  9 06:37 runpilot2-wrapper.sh
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc      5111 Feb  9 06:41 queuedata.json
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc       100 Feb 10 00:49 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 02:32:37] -rwxr-xr-x 1 boinc boinc      7986 Feb 10 00:49 run_atlas
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc       105 Feb 10 00:49 job.xml
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc 679840790 Feb 10 00:49 EVNT.48431094._000074.pool.root.1
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc    597960 Feb 10 00:49 input.tar.gz
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc     15845 Feb 10 00:49 start_atlas.sh
[2026-02-10 02:32:37] drwxrwx--x 2 boinc boinc      4096 Feb 10 00:49 shared
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc         0 Feb 10 00:49 boinc_setup_complete
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc      6370 Feb 10 00:49 init_data.xml
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc         0 Feb 10 00:49 boinc_lockfile
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc      2555 Feb 10 00:49 pandaJob.out
[2026-02-10 02:32:37] -rw------- 1 boinc boinc   1009496 Feb 10 00:49 agis_schedconf.cvmfs.json
[2026-02-10 02:32:37] -rw------- 1 boinc boinc   1513144 Feb 10 00:49 agis_ddmendpoints.agis.ALL.json
[2026-02-10 02:32:37] -rw------- 1 boinc boinc       421 Feb 10 00:49 workernode_map.json
[2026-02-10 02:32:37] drwx------ 5 boinc boinc      4096 Feb 10 00:49 pilot3
[2026-02-10 02:32:37] -rw------- 1 boinc boinc 280366618 Feb 10 02:31 HITS.48431096._015120.pool.root.1
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc       530 Feb 10 02:31 boinc_task_state.xml
[2026-02-10 02:32:37] -rw------- 1 boinc boinc      1019 Feb 10 02:31 memory_monitor_summary.json
[2026-02-10 02:32:37] -rw------- 1 boinc boinc        95 Feb 10 02:31 pilot_heartbeat.json
[2026-02-10 02:32:37] -rw------- 1 boinc boinc    303370 Feb 10 02:31 log.48431096._015120.job.log.tgz.1
[2026-02-10 02:32:37] -rw------- 1 boinc boinc      6309 Feb 10 02:31 heartbeat.json
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc      8192 Feb 10 02:32 boinc_mmap_file
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc        27 Feb 10 02:32 wrapper_checkpoint.txt
[2026-02-10 02:32:37] -rw------- 1 boinc boinc      4552 Feb 10 02:32 pilotlog.txt
[2026-02-10 02:32:37] -rw------- 1 boinc boinc    891130 Feb 10 02:32 log.48431096._015120.job.log.1
[2026-02-10 02:32:37] -rw------- 1 boinc boinc       357 Feb 10 02:32 output.list
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc       620 Feb 10 02:32 runtime_log
[2026-02-10 02:32:37] -rw------- 1 boinc boinc   1208320 Feb 10 02:32 result.tar.gz
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc      8901 Feb 10 02:32 runtime_log.err
[2026-02-10 02:32:37] -rw------- 1 boinc boinc       658 Feb 10 02:32 UiHLDm28Y98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmSQfKDm4lLbqm.diag
[2026-02-10 02:32:37] -rw-r--r-- 1 boinc boinc     12648 Feb 10 02:32 stderr.txt
[2026-02-10 02:32:37] HITS file was successfully produced:
[2026-02-10 02:32:37] -rw------- 1 boinc boinc 280366618 Feb 10 02:31 shared/HITS.pool.root.1
[2026-02-10 02:32:37]  *** Contents of shared directory: ***
[2026-02-10 02:32:37] total 939492
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc 679840790 Feb 10 00:49 ATLAS.root_0
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc    597960 Feb 10 00:49 input.tar.gz
[2026-02-10 02:32:37] -rw-r--r-- 2 boinc boinc     15845 Feb 10 00:49 start_atlas.sh
[2026-02-10 02:32:37] -rw------- 1 boinc boinc 280366618 Feb 10 02:31 HITS.pool.root.1
[2026-02-10 02:32:37] -rw------- 1 boinc boinc   1208320 Feb 10 02:32 result.tar.gz
02:32:39 (437161): run_atlas exited; CPU time 23395.233901
02:32:39 (437161): called boinc_finish(0)

</stderr_txt>
]]>

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