Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:07:53 (28128): wrapper (7.7.26015): starting
07:07:53 (28128): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 07:07:53] Arguments: --nthreads 8
[2026-02-09 07:07:53] Threads: 8
[2026-02-09 07:07:53] Checking for CVMFS
[2026-02-09 07:07:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 07:07:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 07:07:53] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 07:07:54] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 07:07:54] 2.11.2.0 11495 225680 148168 156054 3 188 17271135 18432000 1833 130560 0 146208888 99.981 8508900 26652 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-09 07:07:54] CVMFS is ok
[2026-02-09 07:07:54] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 07:07:54] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 07:07:54] Further information can be found at the LHC@home message board.
[2026-02-09 07:07:54] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 07:07:54] Checking for apptainer binary...
[2026-02-09 07:07:54] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 07:07:54] Running /usr/bin/apptainer --version
[2026-02-09 07:07:54] apptainer version 1.3.2-1.el7
[2026-02-09 07:07:54] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 07:07:55] c-206-31.aglt2.org
[2026-02-09 07:07:55] apptainer works
[2026-02-09 07:07:55] Set ATHENA_PROC_NUMBER=8
[2026-02-09 07:07:55] Set ATHENA_CORE_NUMBER=8
[2026-02-09 07:07:55] Starting ATLAS job with PandaID=7000144935
[2026-02-09 07:07:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
07:31:09 (14199): wrapper (7.7.26015): starting
07:31:09 (14199): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 07:31:09] Arguments: --nthreads 8
[2026-02-09 07:31:09] Threads: 8
[2026-02-09 07:31:09] This job has been restarted, cleaning up previous attempt
[2026-02-09 07:31:09] Checking for CVMFS
[2026-02-09 07:31:09] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 07:31:10] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 07:31:10] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 07:31:10] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 07:31:10] 2.11.2.0 11495 225703 144992 156054 0 188 17278187 18432000 1 130560 0 146259504 99.981 8508903 26652 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-09 07:31:10] CVMFS is ok
[2026-02-09 07:31:10] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 07:31:10] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 07:31:10] Further information can be found at the LHC@home message board.
[2026-02-09 07:31:10] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 07:31:10] Checking for apptainer binary...
[2026-02-09 07:31:10] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 07:31:10] Running /usr/bin/apptainer --version
[2026-02-09 07:31:10] apptainer version 1.3.2-1.el7
[2026-02-09 07:31:10] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 07:31:11] c-206-31.aglt2.org
[2026-02-09 07:31:11] apptainer works
[2026-02-09 07:31:11] Set ATHENA_PROC_NUMBER=8
[2026-02-09 07:31:11] Set ATHENA_CORE_NUMBER=8
[2026-02-09 07:31:11] Starting ATLAS job with PandaID=7000144935
[2026-02-09 07:31:11] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 10:41:49]  *** The last 200 lines of the pilot log: ***
[2026-02-09 10:41:49] 2026-02-09 15:41:15,718 | INFO     | job 7000144935 has finished - writing final server update
[2026-02-09 10:41:49] 2026-02-09 15:41:15,719 | INFO     | total number of processed events: 400 (read)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,724 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-7000144935/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,724 | INFO     | extracted standard info from prmon json
[2026-02-09 10:41:49] 2026-02-09 15:41:15,724 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 10:41:49] 2026-02-09 15:41:15,725 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 10:41:49] 2026-02-09 15:41:15,725 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 10:41:49] 2026-02-09 15:41:15,725 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 10:41:49] 2026-02-09 15:41:15,730 | INFO     | fitting pss+swap vs Time
[2026-02-09 10:41:49] 2026-02-09 15:41:15,731 | INFO     | sum of square deviations: 2027639878.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,732 | INFO     | sum of deviations: 24509991296.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,733 | INFO     | mean x: 1770645981.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,733 | INFO     | mean y: 2549437.7593582887
[2026-02-09 10:41:49] 2026-02-09 15:41:15,733 | INFO     | intersect: -21400914783.61624
[2026-02-09 10:41:49] 2026-02-09 15:41:15,734 | INFO     | chi2: 2.13663262542311
[2026-02-09 10:41:49] 2026-02-09 15:41:15,734 | INFO     | sum of square deviations: 1869302025.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,735 | INFO     | sum of deviations: 36706624309.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,736 | INFO     | mean x: 1770645828.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,736 | INFO     | mean y: 2560908.8076923075
[2026-02-09 10:41:49] 2026-02-09 15:41:15,736 | INFO     | intersect: -34766797025.4984
[2026-02-09 10:41:49] 2026-02-09 15:41:15,736 | INFO     | chi2: 1.3128308771461636
[2026-02-09 10:41:49] 2026-02-09 15:41:15,737 | INFO     | current chi2=1.3128308771461636 (change=38.556078311020435 %)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,737 | INFO     | sum of square deviations: 1719429448.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,738 | INFO     | sum of deviations: 35452977471.99999
[2026-02-09 10:41:49] 2026-02-09 15:41:15,739 | INFO     | mean x: 1770645676.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,739 | INFO     | mean y: 2559632.8700564974
[2026-02-09 10:41:49] 2026-02-09 15:41:15,739 | INFO     | intersect: -36506447081.618996
[2026-02-09 10:41:49] 2026-02-09 15:41:15,740 | INFO     | chi2: 1.312987944525718
[2026-02-09 10:41:49] 2026-02-09 15:41:15,740 | INFO     | current chi2=1.312987944525718 (change=-0.011964022349609627 %)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,740 | INFO     | right removable region: 176
[2026-02-09 10:41:49] 2026-02-09 15:41:15,740 | INFO     | sum of square deviations: 1869302025.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,742 | INFO     | sum of deviations: -4190334457.499998
[2026-02-09 10:41:49] 2026-02-09 15:41:15,742 | INFO     | mean x: 1770646133.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,742 | INFO     | mean y: 2576785.1373626376
[2026-02-09 10:41:49] 2026-02-09 15:41:15,742 | INFO     | intersect: 3971758546.0460105
[2026-02-09 10:41:49] 2026-02-09 15:41:15,743 | INFO     | chi2: 0.8471707659562092
[2026-02-09 10:41:49] 2026-02-09 15:41:15,743 | INFO     | current chi2=0.8471707659562092 (change=60.35019048777994 %)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,744 | INFO     | sum of square deviations: 1719429448.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,745 | INFO     | sum of deviations: -6089064957.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,745 | INFO     | mean x: 1770646286.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,745 | INFO     | mean y: 2578712.2598870057
[2026-02-09 10:41:49] 2026-02-09 15:41:15,745 | INFO     | intersect: 6273019330.72532
[2026-02-09 10:41:49] 2026-02-09 15:41:15,746 | INFO     | chi2: 0.8446322275208735
[2026-02-09 10:41:49] 2026-02-09 15:41:15,746 | INFO     | current chi2=0.8446322275208735 (change=0.29964896539724434 %)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,746 | INFO     | left removable region: 20
[2026-02-09 10:41:49] 2026-02-09 15:41:15,747 | INFO     | sum of square deviations: 1177156955.0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,748 | INFO     | sum of deviations: 3752367084.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,748 | INFO     | mean x: 1770646255.5
[2026-02-09 10:41:49] 2026-02-09 15:41:15,748 | INFO     | mean y: 2593760.262820513
[2026-02-09 10:41:49] 2026-02-09 15:41:15,748 | INFO     | intersect: -5641610862.757376
[2026-02-09 10:41:49] 2026-02-09 15:41:15,749 | INFO     | chi2: 0.00011003900811399965
[2026-02-09 10:41:49] 2026-02-09 15:41:15,749 | INFO     | current memory leak: 3.19 B/s (using 156 data points, chi2=0.00)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,750 | INFO     | could have reported an average CPU frequency of 2422 MHz (10 samples)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,750 | INFO     | ..............................
[2026-02-09 10:41:49] 2026-02-09 15:41:15,750 | INFO     | . Timing measurements:
[2026-02-09 10:41:49] 2026-02-09 15:41:15,750 | INFO     | . get job = 0 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,750 | INFO     | . initial setup = 1 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | . payload setup = 6 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | . stage-in = 0 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | . payload execution = 11361 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | . stage-out = 2 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | . log creation = 0 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,751 | INFO     | ..............................
[2026-02-09 10:41:49] 2026-02-09 15:41:15,866 | INFO     | 
[2026-02-09 10:41:49] 2026-02-09 15:41:15,867 | INFO     | job summary report
[2026-02-09 10:41:49] 2026-02-09 15:41:15,867 | INFO     | --------------------------------------------------
[2026-02-09 10:41:49] 2026-02-09 15:41:15,867 | INFO     | PanDA job id: 7000144935
[2026-02-09 10:41:49] 2026-02-09 15:41:15,867 | INFO     | task id: 48466714
[2026-02-09 10:41:49] 2026-02-09 15:41:15,867 | INFO     | errors: (none)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | pilot state: finished 
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | transexitcode: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | exeerrorcode: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | exeerrordiag: 
[2026-02-09 10:41:49] 2026-02-09 15:41:15,868 | INFO     | exitcode: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | exitmsg: OK
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | cpuconsumptiontime: 87067 s
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | nevents: 400
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | neventsw: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | pid: 32733
[2026-02-09 10:41:49] 2026-02-09 15:41:15,869 | INFO     | pgrp: 32733
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | corecount: 8
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | event service: False
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | sizes: {0: 2282572, 1: 2283033, 11: 2283033, 11372: 2312227, 11375: 2321225, 11377: 2321281, 11380: 2321603}
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | --------------------------------------------------
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | 
[2026-02-09 10:41:49] 2026-02-09 15:41:15,870 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2026-02-09 10:41:49] 2026-02-09 15:41:15,888 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,888 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,889 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,890 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,890 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,890 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,890 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,890 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,891 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,892 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 10:41:49] 2026-02-09 15:41:15,892 | INFO     | job 7000144935 has completed (purged errors)
[2026-02-09 10:41:49] 2026-02-09 15:41:15,892 | INFO     | overall cleanup function is called
[2026-02-09 10:41:49] 2026-02-09 15:41:16,901 | INFO     | --- collectZombieJob: --- 10, [32733]
[2026-02-09 10:41:49] 2026-02-09 15:41:16,901 | INFO     | zombie collector waiting for pid 32733
[2026-02-09 10:41:49] 2026-02-09 15:41:16,901 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 10:41:49] 2026-02-09 15:41:16,901 | INFO     | collected zombie processes
[2026-02-09 10:41:49] 2026-02-09 15:41:16,901 | INFO     | will attempt to kill all subprocesses of pid=32733
[2026-02-09 10:41:49] 2026-02-09 15:41:17,062 | INFO     | process IDs to be killed: [32733] (in reverse order)
[2026-02-09 10:41:49] 2026-02-09 15:41:17,116 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 10:41:49] 2026-02-09 15:41:17,116 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 10:41:49] 2026-02-09 15:41:17,120 | INFO     | did not find any defunct processes belonging to 32733
[2026-02-09 10:41:49] 2026-02-09 15:41:17,122 | INFO     | did not find any defunct processes belonging to 32733
[2026-02-09 10:41:49] 2026-02-09 15:41:17,122 | INFO     | ready for new job
[2026-02-09 10:41:49] 2026-02-09 15:41:17,123 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 10:41:49] 2026-02-09 15:41:17,124 | INFO     | **************************************
[2026-02-09 10:41:49] 2026-02-09 15:41:17,124 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 10:41:49] 2026-02-09 15:41:17,124 | INFO     | **************************************
[2026-02-09 10:41:49] 2026-02-09 15:41:17,124 | INFO     | 
[2026-02-09 10:41:49] 2026-02-09 15:41:17,125 | INFO     | architecture information:
[2026-02-09 10:41:49] 2026-02-09 15:41:17,125 | INFO     | executing command: cat /etc/os-release
[2026-02-09 10:41:49] 2026-02-09 15:41:17,136 | INFO     | cat /etc/os-release:
[2026-02-09 10:41:49] NAME="CentOS Linux"
[2026-02-09 10:41:49] VERSION="7 (Core)"
[2026-02-09 10:41:49] ID="centos"
[2026-02-09 10:41:49] ID_LIKE="rhel fedora"
[2026-02-09 10:41:49] VERSION_ID="7"
[2026-02-09 10:41:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 10:41:49] ANSI_COLOR="0;31"
[2026-02-09 10:41:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 10:41:49] HOME_URL="https://www.centos.org/"
[2026-02-09 10:41:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 10:41:49] 
[2026-02-09 10:41:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 10:41:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 10:41:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 10:41:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 10:41:49] 
[2026-02-09 10:41:49] 2026-02-09 15:41:17,136 | INFO     | **************************************
[2026-02-09 10:41:49] 2026-02-09 15:41:17,640 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2026-02-09 10:41:49] 2026-02-09 15:41:17,660 | INFO     | sufficient remaining disk space (25616711680 B)
[2026-02-09 10:41:49] 2026-02-09 15:41:17,661 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 10:41:49] 2026-02-09 15:41:17,661 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 10:41:49] 2026-02-09 15:41:17,661 | INFO     | update_server=False
[2026-02-09 10:41:49] 2026-02-09 15:41:17,661 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 10:41:49] 2026-02-09 15:41:17,662 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 10:41:49] 2026-02-09 15:41:17,753 | INFO     | all data control threads have been joined
[2026-02-09 10:41:49] 2026-02-09 15:41:17,995 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 10:41:49] 2026-02-09 15:41:18,005 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 10:41:49] 2026-02-09 15:41:18,005 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 10:41:49] 2026-02-09 15:41:18,005 | INFO     | will abort loop
[2026-02-09 10:41:49] 2026-02-09 15:41:18,118 | INFO     | all job control threads have been joined
[2026-02-09 10:41:49] 2026-02-09 15:41:18,508 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 10:41:49] 2026-02-09 15:41:18,667 | INFO     | [job] retrieve thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:18,668 | INFO     | [job] queue monitor thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:18,754 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:18,758 | INFO     | [data] control thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:18,815 | INFO     | all payload control threads have been joined
[2026-02-09 10:41:49] 2026-02-09 15:41:18,816 | INFO     | [payload] validate_post thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:18,879 | INFO     | [job] validate thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,011 | INFO     | [job] job monitor thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,123 | INFO     | [job] control thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,345 | INFO     | [payload] failed_post thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 10:41:49] 2026-02-09 15:41:19,496 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,503 | INFO     | [data] copytool_in thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,558 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,820 | INFO     | [payload] control thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:19,970 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:20,513 | INFO     | [data] copytool_out thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:23,381 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 10:41:49] 2026-02-09 15:41:43,401 | INFO     | [monitor] cgroup control has ended
[2026-02-09 10:41:49] 2026-02-09 15:41:43,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140146392078144)>', '<ExcThread(monitor, started 140146108258048)>']
[2026-02-09 10:41:49] 2026-02-09 15:41:48,693 | INFO     | PID=25601 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 10:41:49] 2026-02-09 15:41:48,694 | INFO     | .. there are 3 such processes running
[2026-02-09 10:41:49] 2026-02-09 15:41:48,695 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 10:41:49] 2026-02-09 15:41:48,695 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 10:41:49] 2026-02-09 15:41:48,695 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 10:41:49] 2026-02-09 15:41:48,695 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 10:41:49] 2026-02-09 15:41:48,695 | INFO     | [monitor] control thread has ended
[2026-02-09 10:41:49] 2026-02-09 15:41:48,738 | INFO     | all workflow threads have been joined
[2026-02-09 10:41:49] 2026-02-09 15:41:48,738 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 10:41:49] 2026-02-09 15:41:48,738 | INFO     | traces error code: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:48,738 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 10:41:49] 2026-02-09 15:41:48,852 [wrapper] ==== pilot stdout END ====
[2026-02-09 10:41:49] 2026-02-09 15:41:48,854 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 10:41:49] 2026-02-09 15:41:48,857 [wrapper] pilotpid: 25601
[2026-02-09 10:41:49] 2026-02-09 15:41:48,860 [wrapper] Pilot exit status: 0
[2026-02-09 10:41:49] 2026-02-09 15:41:48,869 [wrapper] pandaids: 7000144935 7000144935
[2026-02-09 10:41:49] 2026-02-09 15:41:48,905 [wrapper] cleanup supervisor_pilot 23008 25603
[2026-02-09 10:41:49] 2026-02-09 15:41:48,907 [wrapper] Test setup, not cleaning
[2026-02-09 10:41:49] 2026-02-09 15:41:48,910 [wrapper] apfmon messages muted
[2026-02-09 10:41:49] 2026-02-09 15:41:48,912 [wrapper] ==== wrapper stdout END ====
[2026-02-09 10:41:49] 2026-02-09 15:41:48,915 [wrapper] ==== wrapper stderr END ====
[2026-02-09 10:41:49]  *** Error codes and diagnostics ***
[2026-02-09 10:41:49]     "exeErrorCode": 0,
[2026-02-09 10:41:49]     "exeErrorDiag": "",
[2026-02-09 10:41:49]     "pilotErrorCode": 0,
[2026-02-09 10:41:49]     "pilotErrorDiag": "",
[2026-02-09 10:41:49]  *** Listing of results directory ***
[2026-02-09 10:41:49] total 1259276
[2026-02-09 10:41:49] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-09 10:41:49] -rwx------ 1 boincer umatlas     36322 Feb  7 00:44 runpilot2-wrapper.sh
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas    584627 Feb  7 00:46 pilot3.tar.gz
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas      5111 Feb  7 00:48 queuedata.json
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas       100 Feb  9 07:07 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 10:41:49] -rwxr-xr-x 1 boincer umatlas      7986 Feb  9 07:07 run_atlas
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas       105 Feb  9 07:07 job.xml
[2026-02-09 10:41:49] -rw-r--r-- 3 boincer umatlas 540916037 Feb  9 07:07 EVNT.48466711._000027.pool.root.1
[2026-02-09 10:41:49] -rw-r--r-- 3 boincer umatlas 540916037 Feb  9 07:07 ATLAS.root_0
[2026-02-09 10:41:49] -rw-r--r-- 2 boincer umatlas     15845 Feb  9 07:07 start_atlas.sh
[2026-02-09 10:41:49] drwxrwx--x 2 boincer umatlas      4096 Feb  9 07:07 shared
[2026-02-09 10:41:49] -rw-r--r-- 2 boincer umatlas    597938 Feb  9 07:07 input.tar.gz
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas         0 Feb  9 07:07 boinc_lockfile
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas      2498 Feb  9 07:31 pandaJob.out
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas        57 Feb  9 07:31 setup.sh.local
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas   1009480 Feb  9 07:31 agis_schedconf.cvmfs.json
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas       445 Feb  9 07:31 workernode_map.json
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas 199589272 Feb  9 10:40 HITS.48466714._001342.pool.root.1
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas       531 Feb  9 10:40 boinc_task_state.xml
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas      5952 Feb  9 10:40 init_data.xml
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas      1044 Feb  9 10:41 memory_monitor_summary.json
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas   1513144 Feb  9 10:41 agis_ddmendpoints.agis.ALL.json
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas    455589 Feb  9 10:41 log.48466714._001342.job.log.tgz.1
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas      6413 Feb  9 10:41 heartbeat.json
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas      8192 Feb  9 10:41 boinc_mmap_file
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas        28 Feb  9 10:41 wrapper_checkpoint.txt
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas        96 Feb  9 10:41 pilot_heartbeat.json
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas      5003 Feb  9 10:41 pilotlog.txt
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas   1605916 Feb  9 10:41 log.48466714._001342.job.log.1
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas       357 Feb  9 10:41 output.list
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas       620 Feb  9 10:41 runtime_log
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas   2078720 Feb  9 10:41 result.tar.gz
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas      9427 Feb  9 10:41 runtime_log.err
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas       784 Feb  9 10:41 8SxKDmwIq88n9Rq4apOajLDm4fhM0noT9bVooX4SDmPXaKDmA285Hn.diag
[2026-02-09 10:41:49] -rw-r--r-- 1 boincer umatlas     23189 Feb  9 10:41 stderr.txt
[2026-02-09 10:41:49] HITS file was successfully produced:
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas 199589272 Feb  9 10:40 shared/HITS.pool.root.1
[2026-02-09 10:41:49]  *** Contents of shared directory: ***
[2026-02-09 10:41:49] total 725792
[2026-02-09 10:41:49] -rw-r--r-- 3 boincer umatlas 540916037 Feb  9 07:07 ATLAS.root_0
[2026-02-09 10:41:49] -rw-r--r-- 2 boincer umatlas     15845 Feb  9 07:07 start_atlas.sh
[2026-02-09 10:41:49] -rw-r--r-- 2 boincer umatlas    597938 Feb  9 07:07 input.tar.gz
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas 199589272 Feb  9 10:40 HITS.pool.root.1
[2026-02-09 10:41:49] -rw------- 1 boincer umatlas   2078720 Feb  9 10:41 result.tar.gz
10:41:50 (14199): run_atlas exited; CPU time 87207.665189
10:41:50 (14199): called boinc_finish(0)

</stderr_txt>
]]>

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