Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:14:48 (113907): wrapper (7.7.26015): starting
22:14:48 (113907): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 22:14:48] Arguments: --nthreads 4
[2026-02-09 22:14:48] Threads: 4
[2026-02-09 22:14:48] Checking for CVMFS
[2026-02-09 22:14:48] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 22:14:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 22:14:48] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 22:14:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 22:14:49] 2.9.2.0 3034 595 71628 156064 0 50 22178091 36864000 0 130560 0 311085 99.991 15170 8470 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 22:14:49] CVMFS is ok
[2026-02-09 22:14:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 22:14:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 22:14:49] Further information can be found at the LHC@home message board.
[2026-02-09 22:14:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 22:14:49] Checking for apptainer binary...
[2026-02-09 22:14:49] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 22:14:49] Running /usr/bin/apptainer --version
[2026-02-09 22:14:49] apptainer version 1.4.1-1.1
[2026-02-09 22:14:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 22:14:49] thA305a
[2026-02-09 22:14:49] apptainer works
[2026-02-09 22:14:49] Set ATHENA_PROC_NUMBER=4
[2026-02-09 22:14:49] Set ATHENA_CORE_NUMBER=4
[2026-02-09 22:14:49] Starting ATLAS job with PandaID=7008632976
[2026-02-09 22:14:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 00:00:24]  *** The last 200 lines of the pilot log: ***
[2026-02-10 00:00:24] 2026-02-09 22:59:52,617 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 00:00:24] 2026-02-09 22:59:52,617 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 00:00:24] 2026-02-09 22:59:52,617 | INFO     | job 7008632976 has completed (purged errors)
[2026-02-10 00:00:24] 2026-02-09 22:59:52,617 | INFO     | overall cleanup function is called
[2026-02-10 00:00:24] 2026-02-09 22:59:53,623 | INFO     | --- collectZombieJob: --- 10, [122558]
[2026-02-10 00:00:24] 2026-02-09 22:59:53,624 | INFO     | zombie collector waiting for pid 122558
[2026-02-10 00:00:24] 2026-02-09 22:59:53,624 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 00:00:24] 2026-02-09 22:59:53,624 | INFO     | collected zombie processes
[2026-02-10 00:00:24] 2026-02-09 22:59:53,624 | INFO     | will attempt to kill all subprocesses of pid=122558
[2026-02-10 00:00:24] 2026-02-09 22:59:53,665 | INFO     | process IDs to be killed: [122558] (in reverse order)
[2026-02-10 00:00:24] 2026-02-09 22:59:53,698 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 00:00:24] 2026-02-09 22:59:53,698 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 00:00:24] 2026-02-09 22:59:53,700 | INFO     | did not find any defunct processes belonging to 122558
[2026-02-10 00:00:24] 2026-02-09 22:59:53,701 | INFO     | did not find any defunct processes belonging to 122558
[2026-02-10 00:00:24] 2026-02-09 22:59:53,701 | INFO     | ready for new job
[2026-02-10 00:00:24] 2026-02-09 22:59:53,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | **************************************
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | **************************************
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | 
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | architecture information:
[2026-02-10 00:00:24] 2026-02-09 22:59:53,702 | INFO     | executing command: cat /etc/os-release
[2026-02-10 00:00:24] 2026-02-09 22:59:53,716 | INFO     | cat /etc/os-release:
[2026-02-10 00:00:24] NAME="CentOS Linux"
[2026-02-10 00:00:24] VERSION="7 (Core)"
[2026-02-10 00:00:24] ID="centos"
[2026-02-10 00:00:24] ID_LIKE="rhel fedora"
[2026-02-10 00:00:24] VERSION_ID="7"
[2026-02-10 00:00:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 00:00:24] ANSI_COLOR="0;31"
[2026-02-10 00:00:24] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 00:00:24] HOME_URL="https://www.centos.org/"
[2026-02-10 00:00:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 00:00:24] 
[2026-02-10 00:00:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 00:00:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 00:00:24] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 00:00:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 00:00:24] 
[2026-02-10 00:00:24] 2026-02-09 22:59:53,716 | INFO     | **************************************
[2026-02-10 00:00:24] 2026-02-09 22:59:54,220 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | INFO     | sufficient remaining disk space (333868695552 B)
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | INFO     | update_server=False
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 00:00:24] 2026-02-09 22:59:54,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 00:00:24] 2026-02-09 22:59:54,239 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:00:24] 2026-02-09 22:59:54,273 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-10 00:00:24] 2026-02-09 22:59:54,273 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-10 00:00:24] 2026-02-09 22:59:54,273 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:00:24] 2026-02-09 22:59:54,274 | INFO     | will abort loop
[2026-02-10 00:00:24] 2026-02-09 22:59:54,342 | INFO     | all payload control threads have been joined
[2026-02-10 00:00:24] 2026-02-09 22:59:54,897 | INFO     | all job control threads have been joined
[2026-02-10 00:00:24] 2026-02-09 22:59:54,965 | INFO     | all data control threads have been joined
[2026-02-10 00:00:24] 2026-02-09 22:59:55,244 | INFO     | [job] retrieve thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,244 | INFO     | [job] queue monitor thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,246 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,253 | INFO     | [payload] failed_post thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,279 | INFO     | [job] job monitor thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,326 | INFO     | [data] copytool_in thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,347 | INFO     | [payload] control thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,775 | INFO     | [payload] validate_post thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,903 | INFO     | [job] control thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:55,971 | INFO     | [data] control thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:56,244 | INFO     | [data] copytool_out thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:56,350 | INFO     | [job] validate thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:56,503 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:56,543 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 00:00:24] 2026-02-09 22:59:56,582 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 00:00:24] 2026-02-09 22:59:57,033 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-10 00:00:24] 2026-02-09 23:00:00,586 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 00:00:24] 2026-02-09 23:00:05,091 | INFO     | job.realtimelogging is not enabled
[2026-02-10 00:00:24] 2026-02-09 23:00:06,096 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 00:00:24] 2026-02-09 23:00:10,886 | INFO     | [monitor] cgroup control has ended
[2026-02-10 00:00:24] 2026-02-09 23:00:12,731 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139916246013760)>', '<ExcThread(monitor, started 139915488630528)>']
[2026-02-10 00:00:24] 2026-02-09 23:00:17,757 | INFO     | all workflow threads have been joined
[2026-02-10 00:00:24] 2026-02-09 23:00:17,757 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 00:00:24] 2026-02-09 23:00:17,757 | INFO     | traces error code: 0
[2026-02-10 00:00:24] 2026-02-09 23:00:17,758 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | INFO     | PID=118042 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 00:00:24] 2026-02-09 23:00:24,552 | INFO     | [monitor] control thread has ended
[2026-02-10 00:00:24] 2026-02-09 23:00:24,627 [wrapper] ==== pilot stdout END ====
[2026-02-10 00:00:24] 2026-02-09 23:00:24,631 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 00:00:24] 2026-02-09 23:00:24,635 [wrapper] pilotpid: 118042
[2026-02-10 00:00:24] 2026-02-09 23:00:24,639 [wrapper] Pilot exit status: 0
[2026-02-10 00:00:24] 2026-02-09 23:00:24,651 [wrapper] pandaids: 7008632976
[2026-02-10 00:00:24] 2026-02-09 23:00:24,673 [wrapper] cleanup supervisor_pilot  130002 118043
[2026-02-10 00:00:24] 2026-02-09 23:00:24,677 [wrapper] Test setup, not cleaning
[2026-02-10 00:00:24] 2026-02-09 23:00:24,681 [wrapper] apfmon messages muted
[2026-02-10 00:00:24] 2026-02-09 23:00:24,685 [wrapper] ==== wrapper stdout END ====
[2026-02-10 00:00:24] 2026-02-09 23:00:24,689 [wrapper] ==== wrapper stderr END ====
[2026-02-10 00:00:24]  *** Error codes and diagnostics ***
[2026-02-10 00:00:24]     "exeErrorCode": 0,
[2026-02-10 00:00:24]     "exeErrorDiag": "",
[2026-02-10 00:00:24]     "pilotErrorCode": 0,
[2026-02-10 00:00:24]     "pilotErrorDiag": "",
[2026-02-10 00:00:24]  *** Listing of results directory ***
[2026-02-10 00:00:24] total 944692
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc    584627 Feb  9 06:33 pilot3.tar.gz
[2026-02-10 00:00:24] -rwx------ 1 boinc boinc     36322 Feb  9 06:35 runpilot2-wrapper.sh
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc      5111 Feb  9 06:36 queuedata.json
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc       100 Feb  9 22:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 00:00:24] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 22:14 run_atlas
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc       105 Feb  9 22:14 job.xml
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc 675415211 Feb  9 22:14 EVNT.48431094._000712.pool.root.1
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc    597965 Feb  9 22:14 input.tar.gz
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc     15845 Feb  9 22:14 start_atlas.sh
[2026-02-10 00:00:24] drwxrwx--x 2 boinc boinc      4096 Feb  9 22:14 shared
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc         0 Feb  9 22:14 boinc_setup_complete
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc      6377 Feb  9 22:14 init_data.xml
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc         0 Feb  9 22:14 boinc_lockfile
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc      2552 Feb  9 22:14 pandaJob.out
[2026-02-10 00:00:24] -rw------- 1 boinc boinc   1009496 Feb  9 22:14 agis_schedconf.cvmfs.json
[2026-02-10 00:00:24] -rw------- 1 boinc boinc   1513144 Feb  9 22:14 agis_ddmendpoints.agis.ALL.json
[2026-02-10 00:00:24] -rw------- 1 boinc boinc       422 Feb  9 22:15 workernode_map.json
[2026-02-10 00:00:24] drwx------ 5 boinc boinc      4096 Feb  9 22:15 pilot3
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc       530 Feb  9 23:59 boinc_task_state.xml
[2026-02-10 00:00:24] -rw------- 1 boinc boinc 285659750 Feb  9 23:59 HITS.48431096._014887.pool.root.1
[2026-02-10 00:00:24] -rw------- 1 boinc boinc        95 Feb  9 23:59 pilot_heartbeat.json
[2026-02-10 00:00:24] -rw------- 1 boinc boinc      1025 Feb  9 23:59 memory_monitor_summary.json
[2026-02-10 00:00:24] -rw------- 1 boinc boinc    271880 Feb  9 23:59 log.48431096._014887.job.log.tgz.1
[2026-02-10 00:00:24] -rw------- 1 boinc boinc      6312 Feb  9 23:59 heartbeat.json
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc        27 Feb 10 00:00 wrapper_checkpoint.txt
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc      8192 Feb 10 00:00 boinc_mmap_file
[2026-02-10 00:00:24] -rw------- 1 boinc boinc       746 Feb 10 00:00 pilotlog.txt
[2026-02-10 00:00:24] -rw------- 1 boinc boinc    908761 Feb 10 00:00 log.48431096._014887.job.log.1
[2026-02-10 00:00:24] -rw------- 1 boinc boinc       357 Feb 10 00:00 output.list
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc       620 Feb 10 00:00 runtime_log
[2026-02-10 00:00:24] -rw------- 1 boinc boinc   1198080 Feb 10 00:00 result.tar.gz
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc      8901 Feb 10 00:00 runtime_log.err
[2026-02-10 00:00:24] -rw------- 1 boinc boinc       658 Feb 10 00:00 7QrMDmU6Y98n9Rq4apOajLDm4fhM0noT9bVooX4SDmjkeKDmfDKp2m.diag
[2026-02-10 00:00:24] -rw-r--r-- 1 boinc boinc     11421 Feb 10 00:00 stderr.txt
[2026-02-10 00:00:24] HITS file was successfully produced:
[2026-02-10 00:00:24] -rw------- 1 boinc boinc 285659750 Feb  9 23:59 shared/HITS.pool.root.1
[2026-02-10 00:00:24]  *** Contents of shared directory: ***
[2026-02-10 00:00:24] total 940336
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc 675415211 Feb  9 22:14 ATLAS.root_0
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc    597965 Feb  9 22:14 input.tar.gz
[2026-02-10 00:00:24] -rw-r--r-- 2 boinc boinc     15845 Feb  9 22:14 start_atlas.sh
[2026-02-10 00:00:24] -rw------- 1 boinc boinc 285659750 Feb  9 23:59 HITS.pool.root.1
[2026-02-10 00:00:24] -rw------- 1 boinc boinc   1198080 Feb 10 00:00 result.tar.gz
00:00:26 (113907): run_atlas exited; CPU time 24070.408336
00:00:26 (113907): called boinc_finish(0)

</stderr_txt>
]]>

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