Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:08:16 (24368): wrapper (7.7.26015): starting
07:08:16 (24368): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 07:08:16] Arguments: --nthreads 8
[2026-02-09 07:08:16] Threads: 8
[2026-02-09 07:08:16] Checking for CVMFS
[2026-02-09 07:08:16] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 07:08:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 07:08:16] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 07:08:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 07:08:16] 2.11.2.0 3869 211373 152408 156054 0 52 18289663 18432001 1833 130560 0 146039187 99.988 7438533 30489 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-09 07:08:16] CVMFS is ok
[2026-02-09 07:08:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 07:08:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 07:08:16] Further information can be found at the LHC@home message board.
[2026-02-09 07:08:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 07:08:16] Checking for apptainer binary...
[2026-02-09 07:08:16] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 07:08:16] Running /usr/bin/apptainer --version
[2026-02-09 07:08:16] apptainer version 1.3.2-1.el7
[2026-02-09 07:08:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 07:08:17] c-206-12.aglt2.org
[2026-02-09 07:08:17] apptainer works
[2026-02-09 07:08:17] Set ATHENA_PROC_NUMBER=8
[2026-02-09 07:08:17] Set ATHENA_CORE_NUMBER=8
[2026-02-09 07:08:17] Starting ATLAS job with PandaID=7008631656
[2026-02-09 07:08:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
11:00:02 (24368): BOINC client no longer exists - exiting
11:00:02 (24368): timer handler: client dead, exiting
11:12:52 (31922): wrapper (7.7.26015): starting
11:12:52 (31922): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 11:12:52] Arguments: --nthreads 8
[2026-02-09 11:12:52] Threads: 8
[2026-02-09 11:12:52] This job has been restarted, cleaning up previous attempt
[2026-02-09 11:12:52] Checking for CVMFS
[2026-02-09 11:12:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 11:12:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 11:12:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 11:12:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 11:12:52] 2.11.2.0 3869 211618 148864 156056 0 11 18311374 18432001 1 130560 0 146201243 99.988 7440007 30490 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-09 11:12:52] CVMFS is ok
[2026-02-09 11:12:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 11:12:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 11:12:52] Further information can be found at the LHC@home message board.
[2026-02-09 11:12:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 11:12:52] Checking for apptainer binary...
[2026-02-09 11:12:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 11:12:52] Running /usr/bin/apptainer --version
[2026-02-09 11:12:52] apptainer version 1.3.2-1.el7
[2026-02-09 11:12:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 11:12:53] c-206-12.aglt2.org
[2026-02-09 11:12:53] apptainer works
[2026-02-09 11:12:53] Set ATHENA_PROC_NUMBER=8
[2026-02-09 11:12:53] Set ATHENA_CORE_NUMBER=8
[2026-02-09 11:12:53] Starting ATLAS job with PandaID=7008631656
[2026-02-09 11:12:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 15:43:39]  *** The last 200 lines of the pilot log: ***
[2026-02-09 15:43:39] 2026-02-09 20:42:53,050 | INFO     | mean y: 2529695.2115384615
[2026-02-09 15:43:39] 2026-02-09 20:42:53,050 | INFO     | intersect: -21087237463.82254
[2026-02-09 15:43:39] 2026-02-09 20:42:53,051 | INFO     | chi2: 1.305656007474547
[2026-02-09 15:43:39] 2026-02-09 20:42:53,051 | INFO     | current chi2=1.305656007474547 (change=0.014539423229884614 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,051 | INFO     | right removable region: 259
[2026-02-09 15:43:39] 2026-02-09 20:42:53,051 | INFO     | sum of square deviations: 5449944045.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,053 | INFO     | sum of deviations: 27076589109.999992
[2026-02-09 15:43:39] 2026-02-09 20:42:53,053 | INFO     | mean x: 1770661813.5
[2026-02-09 15:43:39] 2026-02-09 20:42:53,053 | INFO     | mean y: 2549218.046153846
[2026-02-09 15:43:39] 2026-02-09 20:42:53,053 | INFO     | intersect: -8794510344.591417
[2026-02-09 15:43:39] 2026-02-09 20:42:53,054 | INFO     | chi2: 0.03471578252508957
[2026-02-09 15:43:39] 2026-02-09 20:42:53,054 | INFO     | current chi2=0.03471578252508957 (change=97.34150994964747 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,054 | INFO     | sum of square deviations: 5141528960.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,056 | INFO     | sum of deviations: 19354368286.000004
[2026-02-09 15:43:39] 2026-02-09 20:42:53,056 | INFO     | mean x: 1770661966.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,056 | INFO     | mean y: 2553018.5725490195
[2026-02-09 15:43:39] 2026-02-09 20:42:53,056 | INFO     | intersect: -6662787985.356527
[2026-02-09 15:43:39] 2026-02-09 20:42:53,057 | INFO     | chi2: 0.004793556578390319
[2026-02-09 15:43:39] 2026-02-09 20:42:53,057 | INFO     | current chi2=0.004793556578390319 (change=86.19199617659216 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,057 | INFO     | sum of square deviations: 4844974562.5
[2026-02-09 15:43:39] 2026-02-09 20:42:53,059 | INFO     | sum of deviations: 16139736209.500002
[2026-02-09 15:43:39] 2026-02-09 20:42:53,059 | INFO     | mean x: 1770662118.5
[2026-02-09 15:43:39] 2026-02-09 20:42:53,059 | INFO     | mean y: 2554668.788
[2026-02-09 15:43:39] 2026-02-09 20:42:53,059 | INFO     | intersect: -5895932338.747127
[2026-02-09 15:43:39] 2026-02-09 20:42:53,059 | INFO     | chi2: 0.002191297176984029
[2026-02-09 15:43:39] 2026-02-09 20:42:53,060 | INFO     | current chi2=0.002191297176984029 (change=54.286610762819684 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,060 | INFO     | sum of square deviations: 4560048290.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,062 | INFO     | sum of deviations: 14098596695.999998
[2026-02-09 15:43:39] 2026-02-09 20:42:53,062 | INFO     | mean x: 1770662271.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,062 | INFO     | mean y: 2555760.3510204083
[2026-02-09 15:43:39] 2026-02-09 20:42:53,062 | INFO     | intersect: -5471915485.577924
[2026-02-09 15:43:39] 2026-02-09 20:42:53,062 | INFO     | chi2: 0.0014847240681843772
[2026-02-09 15:43:39] 2026-02-09 20:42:53,063 | INFO     | current chi2=0.0014847240681843772 (change=32.24451326004705 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,063 | INFO     | sum of square deviations: 4286517580.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,064 | INFO     | sum of deviations: 12565556651.999998
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | mean x: 1770662423.5
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | mean y: 2556615.0416666665
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | intersect: -5187987592.187937
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | chi2: 0.0011976814195313796
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | current chi2=0.0011976814195313796 (change=19.333063617943036 %)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,065 | INFO     | left removable region: 50
[2026-02-09 15:43:39] 2026-02-09 20:42:53,066 | INFO     | sum of square deviations: 2830787960.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,067 | INFO     | sum of deviations: 6878963961.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,067 | INFO     | mean x: 1770663003.0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,067 | INFO     | mean y: 2559436.043062201
[2026-02-09 15:43:39] 2026-02-09 20:42:53,067 | INFO     | intersect: -4300244997.501665
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | chi2: 0.0005510825394956926
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | current memory leak: 2.43 B/s (using 209 data points, chi2=0.00)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | could have reported an average CPU frequency of 2400 MHz (12 samples)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | ..............................
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | . Timing measurements:
[2026-02-09 15:43:39] 2026-02-09 20:42:53,068 | INFO     | . get job = 0 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . initial setup = 2 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . payload setup = 5 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . stage-in = 0 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . payload execution = 16161 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . stage-out = 2 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | . log creation = 0 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,069 | INFO     | ..............................
[2026-02-09 15:43:39] 2026-02-09 20:42:53,465 | INFO     | 
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | job summary report
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | --------------------------------------------------
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | PanDA job id: 7008631656
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | task id: 48431096
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | errors: (none)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 15:43:39] 2026-02-09 20:42:53,466 | INFO     | pilot state: finished 
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | transexitcode: 0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | exeerrorcode: 0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | exeerrordiag: 
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | exitcode: 0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | exitmsg: OK
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | cpuconsumptiontime: 124848 s
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | nevents: 400
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | neventsw: 0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,467 | INFO     | pid: 18443
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | pgrp: 18443
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | corecount: 8
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | event service: False
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | sizes: {0: 2282595, 1: 2283112, 12: 2283112, 16170: 2314582, 16172: 2323580, 16173: 2323636, 16174: 2323958}
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | --------------------------------------------------
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | 
[2026-02-09 15:43:39] 2026-02-09 20:42:53,468 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2026-02-09 15:43:39] 2026-02-09 20:42:53,484 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,485 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,486 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,487 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,487 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,487 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 15:43:39] 2026-02-09 20:42:53,487 | INFO     | job 7008631656 has completed (purged errors)
[2026-02-09 15:43:39] 2026-02-09 20:42:53,487 | INFO     | overall cleanup function is called
[2026-02-09 15:43:39] 2026-02-09 20:42:53,918 | WARNING  | process 18443 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 15:43:39] 2026-02-09 20:42:54,004 | INFO     | using path: /tmp/boinchome/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 15:43:39] 2026-02-09 20:42:54,111 | INFO     | number of running child processes to parent process 18443: 1
[2026-02-09 15:43:39] 2026-02-09 20:42:54,111 | INFO     | maximum number of monitored processes: 6
[2026-02-09 15:43:39] 2026-02-09 20:42:54,111 | INFO     | aborting job monitoring since job object (job id=7008631656) has expired
[2026-02-09 15:43:39] 2026-02-09 20:42:54,493 | INFO     | --- collectZombieJob: --- 10, [18443]
[2026-02-09 15:43:39] 2026-02-09 20:42:54,494 | INFO     | zombie collector waiting for pid 18443
[2026-02-09 15:43:39] 2026-02-09 20:42:54,494 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 15:43:39] 2026-02-09 20:42:54,494 | INFO     | collected zombie processes
[2026-02-09 15:43:39] 2026-02-09 20:42:54,494 | INFO     | will attempt to kill all subprocesses of pid=18443
[2026-02-09 15:43:39] 2026-02-09 20:42:54,603 | INFO     | process IDs to be killed: [18443] (in reverse order)
[2026-02-09 15:43:39] 2026-02-09 20:42:54,657 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 15:43:39] 2026-02-09 20:42:54,657 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 15:43:39] 2026-02-09 20:42:54,661 | INFO     | did not find any defunct processes belonging to 18443
[2026-02-09 15:43:39] 2026-02-09 20:42:54,664 | INFO     | did not find any defunct processes belonging to 18443
[2026-02-09 15:43:39] 2026-02-09 20:42:54,664 | INFO     | ready for new job
[2026-02-09 15:43:39] 2026-02-09 20:42:54,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 15:43:39] 2026-02-09 20:42:54,666 | INFO     | **************************************
[2026-02-09 15:43:39] 2026-02-09 20:42:54,666 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 15:43:39] 2026-02-09 20:42:54,667 | INFO     | **************************************
[2026-02-09 15:43:39] 2026-02-09 20:42:54,667 | INFO     | 
[2026-02-09 15:43:39] 2026-02-09 20:42:54,668 | INFO     | architecture information:
[2026-02-09 15:43:39] 2026-02-09 20:42:54,668 | INFO     | executing command: cat /etc/os-release
[2026-02-09 15:43:39] 2026-02-09 20:42:54,682 | INFO     | cat /etc/os-release:
[2026-02-09 15:43:39] NAME="CentOS Linux"
[2026-02-09 15:43:39] VERSION="7 (Core)"
[2026-02-09 15:43:39] ID="centos"
[2026-02-09 15:43:39] ID_LIKE="rhel fedora"
[2026-02-09 15:43:39] VERSION_ID="7"
[2026-02-09 15:43:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 15:43:39] ANSI_COLOR="0;31"
[2026-02-09 15:43:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 15:43:39] HOME_URL="https://www.centos.org/"
[2026-02-09 15:43:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 15:43:39] 
[2026-02-09 15:43:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 15:43:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 15:43:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 15:43:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 15:43:39] 
[2026-02-09 15:43:39] 2026-02-09 20:42:54,682 | INFO     | **************************************
[2026-02-09 15:43:39] 2026-02-09 20:42:55,185 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2026-02-09 15:43:39] 2026-02-09 20:42:55,198 | INFO     | sufficient remaining disk space (24526192640 B)
[2026-02-09 15:43:39] 2026-02-09 20:42:55,199 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 15:43:39] 2026-02-09 20:42:55,199 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 15:43:39] 2026-02-09 20:42:55,199 | INFO     | update_server=False
[2026-02-09 15:43:39] 2026-02-09 20:42:55,199 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 15:43:39] 2026-02-09 20:42:55,199 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 15:43:39] 2026-02-09 20:42:55,200 | INFO     | aborting loop
[2026-02-09 15:43:39] 2026-02-09 20:42:55,908 | INFO     | all payload control threads have been joined
[2026-02-09 15:43:39] 2026-02-09 20:42:56,202 | INFO     | [job] job monitor thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,205 | INFO     | [job] retrieve thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,277 | INFO     | all data control threads have been joined
[2026-02-09 15:43:39] 2026-02-09 20:42:56,449 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 15:43:39] 2026-02-09 20:42:56,464 | INFO     | [payload] failed_post thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,611 | INFO     | all job control threads have been joined
[2026-02-09 15:43:39] 2026-02-09 20:42:56,913 | INFO     | [payload] control thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,972 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,974 | INFO     | [data] copytool_in thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,975 | INFO     | [job] validate thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:56,982 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:57,110 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:57,212 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:57,283 | INFO     | [data] control thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:57,616 | INFO     | [job] control thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:57,658 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 15:43:39] 2026-02-09 20:42:57,686 | INFO     | [payload] validate_post thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:58,163 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 15:43:39] 2026-02-09 20:42:58,455 | INFO     | [data] copytool_out thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:42:59,168 | INFO     | [job] queue monitor thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:43:01,662 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 15:43:39] 2026-02-09 20:43:06,711 [wrapper] supervise_pilot (15 min periods counter: 19)
[2026-02-09 15:43:39] 2026-02-09 20:43:25,286 | INFO     | PID=10727 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 15:43:39] 2026-02-09 20:43:25,286 | INFO     | .. there are 3 such processes running
[2026-02-09 15:43:39] 2026-02-09 20:43:25,287 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 15:43:39] 2026-02-09 20:43:25,287 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 15:43:39] 2026-02-09 20:43:25,287 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 15:43:39] 2026-02-09 20:43:33,540 | INFO     | [monitor] cgroup control has ended
[2026-02-09 15:43:39] 2026-02-09 20:43:34,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140711879604032)>', '<ExcThread(monitor, started 140711299110656)>']
[2026-02-09 15:43:39] 2026-02-09 20:43:35,330 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 15:43:39] 2026-02-09 20:43:35,330 | INFO     | [monitor] control thread has ended
[2026-02-09 15:43:39] 2026-02-09 20:43:39,686 | INFO     | all workflow threads have been joined
[2026-02-09 15:43:39] 2026-02-09 20:43:39,686 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 15:43:39] 2026-02-09 20:43:39,686 | INFO     | traces error code: 0
[2026-02-09 15:43:39] 2026-02-09 20:43:39,686 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 15:43:39] 2026-02-09 20:43:39,765 [wrapper] ==== pilot stdout END ====
[2026-02-09 15:43:39] 2026-02-09 20:43:39,768 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 15:43:39] 2026-02-09 20:43:39,770 [wrapper] pilotpid: 10727
[2026-02-09 15:43:39] 2026-02-09 20:43:39,773 [wrapper] Pilot exit status: 0
[2026-02-09 15:43:39] 2026-02-09 20:43:39,783 [wrapper] pandaids: 7008631656 7008631656
[2026-02-09 15:43:39] 2026-02-09 20:43:39,809 [wrapper] cleanup supervisor_pilot 19220 10729
[2026-02-09 15:43:39] 2026-02-09 20:43:39,811 [wrapper] Test setup, not cleaning
[2026-02-09 15:43:39] 2026-02-09 20:43:39,813 [wrapper] apfmon messages muted
[2026-02-09 15:43:39] 2026-02-09 20:43:39,816 [wrapper] ==== wrapper stdout END ====
[2026-02-09 15:43:39] 2026-02-09 20:43:39,819 [wrapper] ==== wrapper stderr END ====
[2026-02-09 15:43:39]  *** Error codes and diagnostics ***
[2026-02-09 15:43:39]     "exeErrorCode": 0,
[2026-02-09 15:43:39]     "exeErrorDiag": "",
[2026-02-09 15:43:39]     "pilotErrorCode": 0,
[2026-02-09 15:43:39]     "pilotErrorDiag": "",
[2026-02-09 15:43:39]  *** Listing of results directory ***
[2026-02-09 15:43:39] total 1602620
[2026-02-09 15:43:39] drwx------ 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas    584627 Feb  9 00:33 pilot3.tar.gz
[2026-02-09 15:43:39] -rwx------ 1 boincer umatlas     36322 Feb  9 00:34 runpilot2-wrapper.sh
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas      5111 Feb  9 00:34 queuedata.json
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas       100 Feb  9 07:08 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 15:43:39] -rwxr-xr-x 1 boincer umatlas      7986 Feb  9 07:08 run_atlas
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas       105 Feb  9 07:08 job.xml
[2026-02-09 15:43:39] -rw-r--r-- 3 boincer umatlas 675765444 Feb  9 07:08 EVNT.48431094._000694.pool.root.1
[2026-02-09 15:43:39] -rw-r--r-- 3 boincer umatlas 675765444 Feb  9 07:08 ATLAS.root_0
[2026-02-09 15:43:39] -rw-r--r-- 2 boincer umatlas     15845 Feb  9 07:08 start_atlas.sh
[2026-02-09 15:43:39] drwxrwx--x 2 boincer umatlas      4096 Feb  9 07:08 shared
[2026-02-09 15:43:39] -rw-r--r-- 2 boincer umatlas    597957 Feb  9 07:08 input.tar.gz
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas         0 Feb  9 07:08 boinc_lockfile
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas      2555 Feb  9 11:12 pandaJob.out
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas        57 Feb  9 11:12 setup.sh.local
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas   1009480 Feb  9 11:13 agis_schedconf.cvmfs.json
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas       445 Feb  9 11:13 workernode_map.json
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas      5953 Feb  9 15:39 init_data.xml
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas 280112185 Feb  9 15:42 HITS.48431096._013991.pool.root.1
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas       533 Feb  9 15:42 boinc_task_state.xml
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas      1051 Feb  9 15:42 memory_monitor_summary.json
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas   1513144 Feb  9 15:42 agis_ddmendpoints.agis.ALL.json
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas    482234 Feb  9 15:42 log.48431096._013991.job.log.tgz.1
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas      6423 Feb  9 15:42 heartbeat.json
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas        96 Feb  9 15:43 pilot_heartbeat.json
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas      8192 Feb  9 15:43 boinc_mmap_file
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas        29 Feb  9 15:43 wrapper_checkpoint.txt
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas      4817 Feb  9 15:43 pilotlog.txt
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas   2264598 Feb  9 15:43 log.48431096._013991.job.log.1
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas       357 Feb  9 15:43 output.list
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas       620 Feb  9 15:43 runtime_log
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas   2764800 Feb  9 15:43 result.tar.gz
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas       788 Feb  9 15:43 SQjKDmu5Y98n9Rq4apOajLDm4fhM0noT9bVooX4SDmyfeKDmcvUz4n.diag
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas      9427 Feb  9 15:43 runtime_log.err
[2026-02-09 15:43:39] -rw-r--r-- 1 boincer umatlas     23349 Feb  9 15:43 stderr.txt
[2026-02-09 15:43:39] HITS file was successfully produced:
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas 280112185 Feb  9 15:42 shared/HITS.pool.root.1
[2026-02-09 15:43:39]  *** Contents of shared directory: ***
[2026-02-09 15:43:39] total 936784
[2026-02-09 15:43:39] -rw-r--r-- 3 boincer umatlas 675765444 Feb  9 07:08 ATLAS.root_0
[2026-02-09 15:43:39] -rw-r--r-- 2 boincer umatlas     15845 Feb  9 07:08 start_atlas.sh
[2026-02-09 15:43:39] -rw-r--r-- 2 boincer umatlas    597957 Feb  9 07:08 input.tar.gz
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas 280112185 Feb  9 15:42 HITS.pool.root.1
[2026-02-09 15:43:39] -rw------- 1 boincer umatlas   2764800 Feb  9 15:43 result.tar.gz
15:43:41 (31922): run_atlas exited; CPU time 125088.888939
15:43:41 (31922): called boinc_finish(0)

</stderr_txt>
]]>

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