Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:38:05 (422955): wrapper (7.7.26015): starting
23:38:05 (422955): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 23:38:05] Arguments: --nthreads 4
[2026-02-09 23:38:05] Threads: 4
[2026-02-09 23:38:05] Checking for CVMFS
[2026-02-09 23:38:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 23:38:06] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 23:38:06] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 23:38:06] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 23:38:06] 2.9.2.0 3731233 5234 95252 156067 0 50 25434139 36864001 0 130560 0 2481938 99.980 322411 2577 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 23:38:06] CVMFS is ok
[2026-02-09 23:38:06] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 23:38:06] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 23:38:06] Further information can be found at the LHC@home message board.
[2026-02-09 23:38:06] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 23:38:06] Checking for apptainer binary...
[2026-02-09 23:38:06] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 23:38:06] Running /usr/bin/apptainer --version
[2026-02-09 23:38:06] apptainer version 1.4.1-1.1
[2026-02-09 23:38:06] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 23:38:06] thA332a
[2026-02-09 23:38:06] apptainer works
[2026-02-09 23:38:06] Set ATHENA_PROC_NUMBER=4
[2026-02-09 23:38:06] Set ATHENA_CORE_NUMBER=4
[2026-02-09 23:38:06] Starting ATLAS job with PandaID=7006174560
[2026-02-09 23:38:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 00:48:47]  *** The last 200 lines of the pilot log: ***
[2026-02-10 00:48:47] 2026-02-09 23:48:16,209 | INFO     | --- collectZombieJob: --- 10, [431581]
[2026-02-10 00:48:47] 2026-02-09 23:48:16,210 | INFO     | zombie collector waiting for pid 431581
[2026-02-10 00:48:47] 2026-02-09 23:48:16,210 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 00:48:47] 2026-02-09 23:48:16,210 | INFO     | collected zombie processes
[2026-02-10 00:48:47] 2026-02-09 23:48:16,210 | INFO     | will attempt to kill all subprocesses of pid=431581
[2026-02-10 00:48:47] 2026-02-09 23:48:16,253 | INFO     | process IDs to be killed: [431581] (in reverse order)
[2026-02-10 00:48:47] 2026-02-09 23:48:16,286 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 00:48:47] 2026-02-09 23:48:16,287 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 00:48:47] 2026-02-09 23:48:16,288 | INFO     | did not find any defunct processes belonging to 431581
[2026-02-10 00:48:47] 2026-02-09 23:48:16,289 | INFO     | did not find any defunct processes belonging to 431581
[2026-02-10 00:48:47] 2026-02-09 23:48:16,289 | INFO     | ready for new job
[2026-02-10 00:48:47] 2026-02-09 23:48:16,290 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 00:48:47] 2026-02-09 23:48:16,290 | INFO     | **************************************
[2026-02-10 00:48:47] 2026-02-09 23:48:16,290 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 00:48:47] 2026-02-09 23:48:16,290 | INFO     | **************************************
[2026-02-10 00:48:47] 2026-02-09 23:48:16,290 | INFO     | 
[2026-02-10 00:48:47] 2026-02-09 23:48:16,291 | INFO     | architecture information:
[2026-02-10 00:48:47] 2026-02-09 23:48:16,291 | INFO     | executing command: cat /etc/os-release
[2026-02-10 00:48:47] 2026-02-09 23:48:16,305 | INFO     | cat /etc/os-release:
[2026-02-10 00:48:47] NAME="CentOS Linux"
[2026-02-10 00:48:47] VERSION="7 (Core)"
[2026-02-10 00:48:47] ID="centos"
[2026-02-10 00:48:47] ID_LIKE="rhel fedora"
[2026-02-10 00:48:47] VERSION_ID="7"
[2026-02-10 00:48:47] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 00:48:47] ANSI_COLOR="0;31"
[2026-02-10 00:48:47] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 00:48:47] HOME_URL="https://www.centos.org/"
[2026-02-10 00:48:47] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 00:48:47] 
[2026-02-10 00:48:47] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 00:48:47] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 00:48:47] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 00:48:47] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 00:48:47] 
[2026-02-10 00:48:47] 2026-02-09 23:48:16,305 | INFO     | **************************************
[2026-02-10 00:48:47] 2026-02-09 23:48:16,809 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | INFO     | sufficient remaining disk space (330239574016 B)
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | INFO     | update_server=False
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 00:48:47] 2026-02-09 23:48:16,827 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:48:47] 2026-02-09 23:48:16,828 | INFO     | aborting loop
[2026-02-10 00:48:47] 2026-02-09 23:48:17,117 | INFO     | all job control threads have been joined
[2026-02-10 00:48:47] 2026-02-09 23:48:17,621 | INFO     | all data control threads have been joined
[2026-02-10 00:48:47] 2026-02-09 23:48:17,832 | INFO     | [job] retrieve thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:17,833 | INFO     | [job] queue monitor thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:17,833 | INFO     | [job] job monitor thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:17,843 | INFO     | [payload] validate_post thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:17,887 | INFO     | all payload control threads have been joined
[2026-02-10 00:48:47] 2026-02-09 23:48:18,123 | INFO     | [job] control thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,601 | INFO     | [payload] failed_post thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,627 | INFO     | [data] control thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,820 | INFO     | [job] validate thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,833 | INFO     | [data] copytool_out thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,893 | INFO     | [payload] control thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,908 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,910 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:18,982 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:19,095 | INFO     | [data] copytool_in thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:19,536 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 00:48:47] 2026-02-09 23:48:23,543 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:23,909 | INFO     | [monitor] cgroup control has ended
[2026-02-10 00:48:47] 2026-02-09 23:48:27,117 | INFO     | job.realtimelogging is not enabled
[2026-02-10 00:48:47] 2026-02-09 23:48:28,122 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 00:48:47] 2026-02-09 23:48:28,970 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140312079464256)>', '<ExcThread(monitor, started 140310994736896)>']
[2026-02-10 00:48:47] 2026-02-09 23:48:33,996 | INFO     | all workflow threads have been joined
[2026-02-10 00:48:47] 2026-02-09 23:48:33,997 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 00:48:47] 2026-02-09 23:48:33,998 | INFO     | traces error code: 0
[2026-02-10 00:48:47] 2026-02-09 23:48:33,998 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 00:48:47] 2026-02-09 23:48:47,544 | INFO     | PID=427068 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-10 00:48:47] 2026-02-09 23:48:47,544 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 00:48:47] 2026-02-09 23:48:47,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 00:48:47] 2026-02-09 23:48:47,545 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 00:48:47] 2026-02-09 23:48:47,545 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 00:48:47] 2026-02-09 23:48:47,545 | INFO     | [monitor] control thread has ended
[2026-02-10 00:48:47] 2026-02-09 23:48:47,621 [wrapper] ==== pilot stdout END ====
[2026-02-10 00:48:47] 2026-02-09 23:48:47,625 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 00:48:47] 2026-02-09 23:48:47,630 [wrapper] pilotpid: 427068
[2026-02-10 00:48:47] 2026-02-09 23:48:47,634 [wrapper] Pilot exit status: 0
[2026-02-10 00:48:47] 2026-02-09 23:48:47,645 [wrapper] pandaids: 7006174560
[2026-02-10 00:48:47] 2026-02-09 23:48:47,668 [wrapper] cleanup supervisor_pilot  436892 427069
[2026-02-10 00:48:47] 2026-02-09 23:48:47,672 [wrapper] Test setup, not cleaning
[2026-02-10 00:48:47] 2026-02-09 23:48:47,676 [wrapper] apfmon messages muted
[2026-02-10 00:48:47] 2026-02-09 23:48:47,680 [wrapper] ==== wrapper stdout END ====
[2026-02-10 00:48:47] 2026-02-09 23:48:47,684 [wrapper] ==== wrapper stderr END ====
[2026-02-10 00:48:47]  *** Error codes and diagnostics ***
[2026-02-10 00:48:47]     "exeErrorCode": 0,
[2026-02-10 00:48:47]     "exeErrorDiag": "",
[2026-02-10 00:48:47]     "pilotErrorCode": 0,
[2026-02-10 00:48:47]     "pilotErrorDiag": "",
[2026-02-10 00:48:47]  *** Listing of results directory ***
[2026-02-10 00:48:47] total 666316
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc    584627 Feb  9 04:56 pilot3.tar.gz
[2026-02-10 00:48:47] -rwx------ 1 boinc boinc     36322 Feb  9 04:59 runpilot2-wrapper.sh
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc      5111 Feb  9 05:01 queuedata.json
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc       100 Feb  9 23:38 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 00:48:47] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 23:38 run_atlas
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc       105 Feb  9 23:38 job.xml
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc 500243909 Feb  9 23:38 EVNT.48442096._000035.pool.root.1
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc    597968 Feb  9 23:38 input.tar.gz
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc     15845 Feb  9 23:38 start_atlas.sh
[2026-02-10 00:48:47] drwxrwx--x 2 boinc boinc      4096 Feb  9 23:38 shared
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc         0 Feb  9 23:38 boinc_setup_complete
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc      6370 Feb  9 23:38 init_data.xml
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc         0 Feb  9 23:38 boinc_lockfile
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc      2527 Feb  9 23:38 pandaJob.out
[2026-02-10 00:48:47] -rw------- 1 boinc boinc   1009496 Feb  9 23:38 agis_schedconf.cvmfs.json
[2026-02-10 00:48:47] -rw------- 1 boinc boinc   1513144 Feb  9 23:38 agis_ddmendpoints.agis.ALL.json
[2026-02-10 00:48:47] -rw------- 1 boinc boinc       421 Feb  9 23:38 workernode_map.json
[2026-02-10 00:48:47] drwx------ 5 boinc boinc      4096 Feb  9 23:38 pilot3
[2026-02-10 00:48:47] -rw------- 1 boinc boinc 176372842 Feb 10 00:47 HITS.48442098._004865.pool.root.1
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc       530 Feb 10 00:48 boinc_task_state.xml
[2026-02-10 00:48:47] -rw------- 1 boinc boinc      1021 Feb 10 00:48 memory_monitor_summary.json
[2026-02-10 00:48:47] -rw------- 1 boinc boinc    263175 Feb 10 00:48 log.48442098._004865.job.log.tgz.1
[2026-02-10 00:48:47] -rw------- 1 boinc boinc      6321 Feb 10 00:48 heartbeat.json
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc      8192 Feb 10 00:48 boinc_mmap_file
[2026-02-10 00:48:47] -rw------- 1 boinc boinc       746 Feb 10 00:48 pilotlog.txt
[2026-02-10 00:48:47] -rw------- 1 boinc boinc        95 Feb 10 00:48 pilot_heartbeat.json
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc        27 Feb 10 00:48 wrapper_checkpoint.txt
[2026-02-10 00:48:47] -rw------- 1 boinc boinc    622514 Feb 10 00:48 log.48442098._004865.job.log.1
[2026-02-10 00:48:47] -rw------- 1 boinc boinc       357 Feb 10 00:48 output.list
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc       620 Feb 10 00:48 runtime_log
[2026-02-10 00:48:47] -rw------- 1 boinc boinc    901120 Feb 10 00:48 result.tar.gz
[2026-02-10 00:48:47] -rw------- 1 boinc boinc       658 Feb 10 00:48 wwTNDm9bX98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJDfKDmY6lXqn.diag
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc      8901 Feb 10 00:48 runtime_log.err
[2026-02-10 00:48:47] -rw-r--r-- 1 boinc boinc     10695 Feb 10 00:48 stderr.txt
[2026-02-10 00:48:47] HITS file was successfully produced:
[2026-02-10 00:48:47] -rw------- 1 boinc boinc 176372842 Feb 10 00:47 shared/HITS.pool.root.1
[2026-02-10 00:48:47]  *** Contents of shared directory: ***
[2026-02-10 00:48:47] total 662248
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc 500243909 Feb  9 23:38 ATLAS.root_0
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc    597968 Feb  9 23:38 input.tar.gz
[2026-02-10 00:48:47] -rw-r--r-- 2 boinc boinc     15845 Feb  9 23:38 start_atlas.sh
[2026-02-10 00:48:47] -rw------- 1 boinc boinc 176372842 Feb 10 00:47 HITS.pool.root.1
[2026-02-10 00:48:47] -rw------- 1 boinc boinc    901120 Feb 10 00:48 result.tar.gz
00:48:49 (422955): run_atlas exited; CPU time 15650.102823
00:48:49 (422955): called boinc_finish(0)

</stderr_txt>
]]>

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