Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:55:44 (178876): wrapper (7.7.26015): starting
22:55:44 (178876): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 22:55:44] Arguments: --nthreads 4
[2026-02-09 22:55:44] Threads: 4
[2026-02-09 22:55:44] Checking for CVMFS
[2026-02-09 22:55:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 22:55:45] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 22:55:45] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 22:55:45] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 22:55:45] 2.9.2.0 3607414 4254 95880 156065 2 50 25293977 36864001 0 130560 0 2037715 99.986 143386 11139 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 22:55:45] CVMFS is ok
[2026-02-09 22:55:45] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 22:55:45] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 22:55:45] Further information can be found at the LHC@home message board.
[2026-02-09 22:55:45] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 22:55:45] Checking for apptainer binary...
[2026-02-09 22:55:45] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 22:55:45] Running /usr/bin/apptainer --version
[2026-02-09 22:55:45] apptainer version 1.4.1-1.1
[2026-02-09 22:55:45] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 22:55:45] thA309
[2026-02-09 22:55:45] apptainer works
[2026-02-09 22:55:45] Set ATHENA_PROC_NUMBER=4
[2026-02-09 22:55:45] Set ATHENA_CORE_NUMBER=4
[2026-02-09 22:55:45] Starting ATLAS job with PandaID=7006172191
[2026-02-09 22:55:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 00:14:22]  *** The last 200 lines of the pilot log: ***
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 00:14:22] 2026-02-09 23:13:50,614 | INFO     | job 7006172191 has completed (purged errors)
[2026-02-10 00:14:22] 2026-02-09 23:13:50,615 | INFO     | overall cleanup function is called
[2026-02-10 00:14:22] 2026-02-09 23:13:51,621 | INFO     | --- collectZombieJob: --- 10, [187522]
[2026-02-10 00:14:22] 2026-02-09 23:13:51,622 | INFO     | zombie collector waiting for pid 187522
[2026-02-10 00:14:22] 2026-02-09 23:13:51,622 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 00:14:22] 2026-02-09 23:13:51,622 | INFO     | collected zombie processes
[2026-02-10 00:14:22] 2026-02-09 23:13:51,622 | INFO     | will attempt to kill all subprocesses of pid=187522
[2026-02-10 00:14:22] 2026-02-09 23:13:51,674 | INFO     | process IDs to be killed: [187522] (in reverse order)
[2026-02-10 00:14:22] 2026-02-09 23:13:51,709 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 00:14:22] 2026-02-09 23:13:51,709 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 00:14:22] 2026-02-09 23:13:51,711 | INFO     | did not find any defunct processes belonging to 187522
[2026-02-10 00:14:22] 2026-02-09 23:13:51,713 | INFO     | did not find any defunct processes belonging to 187522
[2026-02-10 00:14:22] 2026-02-09 23:13:51,713 | INFO     | ready for new job
[2026-02-10 00:14:22] 2026-02-09 23:13:51,713 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 00:14:22] 2026-02-09 23:13:51,714 | INFO     | **************************************
[2026-02-10 00:14:22] 2026-02-09 23:13:51,714 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 00:14:22] 2026-02-09 23:13:51,714 | INFO     | **************************************
[2026-02-10 00:14:22] 2026-02-09 23:13:51,714 | INFO     | 
[2026-02-10 00:14:22] 2026-02-09 23:13:51,715 | INFO     | architecture information:
[2026-02-10 00:14:22] 2026-02-09 23:13:51,715 | INFO     | executing command: cat /etc/os-release
[2026-02-10 00:14:22] 2026-02-09 23:13:51,729 | INFO     | cat /etc/os-release:
[2026-02-10 00:14:22] NAME="CentOS Linux"
[2026-02-10 00:14:22] VERSION="7 (Core)"
[2026-02-10 00:14:22] ID="centos"
[2026-02-10 00:14:22] ID_LIKE="rhel fedora"
[2026-02-10 00:14:22] VERSION_ID="7"
[2026-02-10 00:14:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 00:14:22] ANSI_COLOR="0;31"
[2026-02-10 00:14:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 00:14:22] HOME_URL="https://www.centos.org/"
[2026-02-10 00:14:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 00:14:22] 
[2026-02-10 00:14:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 00:14:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 00:14:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 00:14:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 00:14:22] 
[2026-02-10 00:14:22] 2026-02-09 23:13:51,729 | INFO     | **************************************
[2026-02-10 00:14:22] 2026-02-09 23:13:52,232 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 00:14:22] 2026-02-09 23:13:52,249 | INFO     | sufficient remaining disk space (230119440384 B)
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | INFO     | update_server=False
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | INFO     | aborting loop
[2026-02-10 00:14:22] 2026-02-09 23:13:52,250 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 00:14:22] 2026-02-09 23:13:52,415 | INFO     | all job control threads have been joined
[2026-02-10 00:14:22] 2026-02-09 23:13:52,528 | INFO     | job.realtimelogging is not enabled
[2026-02-10 00:14:22] 2026-02-09 23:13:52,643 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 00:14:22] 2026-02-09 23:13:52,744 | INFO     | all data control threads have been joined
[2026-02-10 00:14:22] 2026-02-09 23:13:52,802 | INFO     | all payload control threads have been joined
[2026-02-10 00:14:22] 2026-02-09 23:13:53,256 | INFO     | [job] retrieve thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,256 | INFO     | [job] job monitor thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,256 | INFO     | [job] queue monitor thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,421 | INFO     | [job] control thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,441 | INFO     | [payload] validate_post thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,474 | INFO     | [payload] failed_post thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,534 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,750 | INFO     | [data] control thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,808 | INFO     | [payload] control thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:53,906 | INFO     | [job] validate thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:54,015 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:54,089 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:54,252 | INFO     | [data] copytool_in thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:54,649 | INFO     | [data] copytool_out thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:54,706 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:13:55,699 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 00:14:22] 2026-02-09 23:13:59,705 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 00:14:22] 2026-02-09 23:14:03,630 | INFO     | [monitor] cgroup control has ended
[2026-02-10 00:14:22] 2026-02-09 23:14:04,878 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139862812800832)>', '<ExcThread(monitor, started 139861516351232)>']
[2026-02-10 00:14:22] 2026-02-09 23:14:09,903 | INFO     | all workflow threads have been joined
[2026-02-10 00:14:22] 2026-02-09 23:14:09,904 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 00:14:22] 2026-02-09 23:14:09,904 | INFO     | traces error code: 0
[2026-02-10 00:14:22] 2026-02-09 23:14:09,904 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | INFO     | PID=182998 has CPU usage=2.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 00:14:22] 2026-02-09 23:14:22,357 | INFO     | [monitor] control thread has ended
[2026-02-10 00:14:22] 2026-02-09 23:14:22,434 [wrapper] ==== pilot stdout END ====
[2026-02-10 00:14:22] 2026-02-09 23:14:22,439 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 00:14:22] 2026-02-09 23:14:22,443 [wrapper] pilotpid: 182998
[2026-02-10 00:14:22] 2026-02-09 23:14:22,447 [wrapper] Pilot exit status: 0
[2026-02-10 00:14:22] 2026-02-09 23:14:22,459 [wrapper] pandaids: 7006172191
[2026-02-10 00:14:22] 2026-02-09 23:14:22,482 [wrapper] cleanup supervisor_pilot  193812 182999
[2026-02-10 00:14:22] 2026-02-09 23:14:22,486 [wrapper] Test setup, not cleaning
[2026-02-10 00:14:22] 2026-02-09 23:14:22,490 [wrapper] apfmon messages muted
[2026-02-10 00:14:22] 2026-02-09 23:14:22,494 [wrapper] ==== wrapper stdout END ====
[2026-02-10 00:14:22] 2026-02-09 23:14:22,498 [wrapper] ==== wrapper stderr END ====
[2026-02-10 00:14:22]  *** Error codes and diagnostics ***
[2026-02-10 00:14:22]     "exeErrorCode": 0,
[2026-02-10 00:14:22]     "exeErrorDiag": "",
[2026-02-10 00:14:22]     "pilotErrorCode": 0,
[2026-02-10 00:14:22]     "pilotErrorDiag": "",
[2026-02-10 00:14:22]  *** Listing of results directory ***
[2026-02-10 00:14:22] total 675840
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc    584627 Feb  9 04:56 pilot3.tar.gz
[2026-02-10 00:14:22] -rwx------ 1 boinc boinc     36322 Feb  9 04:59 runpilot2-wrapper.sh
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc      5111 Feb  9 04:59 queuedata.json
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc       100 Feb  9 22:55 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 00:14:22] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 22:55 run_atlas
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc       105 Feb  9 22:55 job.xml
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc 496047727 Feb  9 22:55 EVNT.48318016._000075.pool.root.1
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc    597950 Feb  9 22:55 input.tar.gz
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc     15845 Feb  9 22:55 start_atlas.sh
[2026-02-10 00:14:22] drwxrwx--x 2 boinc boinc      4096 Feb  9 22:55 shared
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc         0 Feb  9 22:55 boinc_setup_complete
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc      6377 Feb  9 22:55 init_data.xml
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc         0 Feb  9 22:55 boinc_lockfile
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc      2521 Feb  9 22:55 pandaJob.out
[2026-02-10 00:14:22] -rw------- 1 boinc boinc   1009488 Feb  9 22:55 agis_schedconf.cvmfs.json
[2026-02-10 00:14:22] -rw------- 1 boinc boinc   1513144 Feb  9 22:55 agis_ddmendpoints.agis.ALL.json
[2026-02-10 00:14:22] -rw------- 1 boinc boinc       421 Feb  9 22:55 workernode_map.json
[2026-02-10 00:14:22] drwx------ 5 boinc boinc      4096 Feb  9 22:55 pilot3
[2026-02-10 00:14:22] -rw------- 1 boinc boinc 190160367 Feb 10 00:13 HITS.48318018._003817.pool.root.1
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc       530 Feb 10 00:13 boinc_task_state.xml
[2026-02-10 00:14:22] -rw------- 1 boinc boinc      1023 Feb 10 00:13 memory_monitor_summary.json
[2026-02-10 00:14:22] -rw------- 1 boinc boinc    277250 Feb 10 00:13 log.48318018._003817.job.log.tgz.1
[2026-02-10 00:14:22] -rw------- 1 boinc boinc      6306 Feb 10 00:13 heartbeat.json
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc      8192 Feb 10 00:14 boinc_mmap_file
[2026-02-10 00:14:22] -rw------- 1 boinc boinc       746 Feb 10 00:14 pilotlog.txt
[2026-02-10 00:14:22] -rw------- 1 boinc boinc        95 Feb 10 00:14 pilot_heartbeat.json
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc        27 Feb 10 00:14 wrapper_checkpoint.txt
[2026-02-10 00:14:22] -rw------- 1 boinc boinc    687133 Feb 10 00:14 log.48318018._003817.job.log.1
[2026-02-10 00:14:22] -rw------- 1 boinc boinc       357 Feb 10 00:14 output.list
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc       620 Feb 10 00:14 runtime_log
[2026-02-10 00:14:22] -rw------- 1 boinc boinc    983040 Feb 10 00:14 result.tar.gz
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc      8896 Feb 10 00:14 runtime_log.err
[2026-02-10 00:14:22] -rw------- 1 boinc boinc       657 Feb 10 00:14 1UcKDmgbX98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmGAfKDm30aQjn.diag
[2026-02-10 00:14:22] -rw-r--r-- 1 boinc boinc     11910 Feb 10 00:14 stderr.txt
[2026-02-10 00:14:22] HITS file was successfully produced:
[2026-02-10 00:14:22] -rw------- 1 boinc boinc 190160367 Feb 10 00:13 shared/HITS.pool.root.1
[2026-02-10 00:14:22]  *** Contents of shared directory: ***
[2026-02-10 00:14:22] total 671696
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc 496047727 Feb  9 22:55 ATLAS.root_0
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc    597950 Feb  9 22:55 input.tar.gz
[2026-02-10 00:14:22] -rw-r--r-- 2 boinc boinc     15845 Feb  9 22:55 start_atlas.sh
[2026-02-10 00:14:22] -rw------- 1 boinc boinc 190160367 Feb 10 00:13 HITS.pool.root.1
[2026-02-10 00:14:22] -rw------- 1 boinc boinc    983040 Feb 10 00:14 result.tar.gz
00:14:24 (178876): run_atlas exited; CPU time 17602.173265
00:14:24 (178876): called boinc_finish(0)

</stderr_txt>
]]>

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