Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:31:44 (464910): wrapper (7.7.26015): starting
19:31:44 (464910): wrapper: running run_atlas (--nthreads 2)
[2026-02-09 19:31:44] Arguments: --nthreads 2
[2026-02-09 19:31:44] Threads: 2
[2026-02-09 19:31:44] Checking for CVMFS
[2026-02-09 19:31:44] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 19:31:44] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 19:31:44] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 19:31:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 19:31:44] 2.9.2.0 2935 4806 61136 156061 2 49 30729807 36864000 0 130560 0 1345926 99.977 168147 9512 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 19:31:44] CVMFS is ok
[2026-02-09 19:31:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 19:31:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 19:31:44] Further information can be found at the LHC@home message board.
[2026-02-09 19:31:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 19:31:44] Checking for apptainer binary...
[2026-02-09 19:31:44] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 19:31:44] Running /usr/bin/apptainer --version
[2026-02-09 19:31:44] apptainer version 1.4.1-1.1
[2026-02-09 19:31:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 19:31:44] magicA244
[2026-02-09 19:31:44] apptainer works
[2026-02-09 19:31:44] Set ATHENA_PROC_NUMBER=2
[2026-02-09 19:31:44] Set ATHENA_CORE_NUMBER=2
[2026-02-09 19:31:44] Starting ATLAS job with PandaID=7008496072
[2026-02-09 19:31:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 22:36:39]  *** The last 200 lines of the pilot log: ***
[2026-02-09 22:36:39] 2026-02-09 21:36:08,467 | INFO     | zombie collector waiting for pid 473350
[2026-02-09 22:36:39] 2026-02-09 21:36:08,467 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 22:36:39] 2026-02-09 21:36:08,467 | INFO     | collected zombie processes
[2026-02-09 22:36:39] 2026-02-09 21:36:08,468 | INFO     | will attempt to kill all subprocesses of pid=473350
[2026-02-09 22:36:39] 2026-02-09 21:36:08,498 | INFO     | process IDs to be killed: [473350] (in reverse order)
[2026-02-09 22:36:39] 2026-02-09 21:36:08,519 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 22:36:39] 2026-02-09 21:36:08,519 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 22:36:39] 2026-02-09 21:36:08,520 | INFO     | did not find any defunct processes belonging to 473350
[2026-02-09 22:36:39] 2026-02-09 21:36:08,520 | INFO     | did not find any defunct processes belonging to 473350
[2026-02-09 22:36:39] 2026-02-09 21:36:08,520 | INFO     | ready for new job
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | **************************************
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | **************************************
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | 
[2026-02-09 22:36:39] 2026-02-09 21:36:08,521 | INFO     | architecture information:
[2026-02-09 22:36:39] 2026-02-09 21:36:08,522 | INFO     | executing command: cat /etc/os-release
[2026-02-09 22:36:39] 2026-02-09 21:36:08,530 | INFO     | cat /etc/os-release:
[2026-02-09 22:36:39] NAME="CentOS Linux"
[2026-02-09 22:36:39] VERSION="7 (Core)"
[2026-02-09 22:36:39] ID="centos"
[2026-02-09 22:36:39] ID_LIKE="rhel fedora"
[2026-02-09 22:36:39] VERSION_ID="7"
[2026-02-09 22:36:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 22:36:39] ANSI_COLOR="0;31"
[2026-02-09 22:36:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 22:36:39] HOME_URL="https://www.centos.org/"
[2026-02-09 22:36:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 22:36:39] 
[2026-02-09 22:36:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 22:36:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 22:36:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 22:36:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 22:36:39] 
[2026-02-09 22:36:39] 2026-02-09 21:36:08,530 | INFO     | **************************************
[2026-02-09 22:36:39] 2026-02-09 21:36:09,034 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 22:36:39] 2026-02-09 21:36:09,045 | INFO     | sufficient remaining disk space (490453598208 B)
[2026-02-09 22:36:39] 2026-02-09 21:36:09,045 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 22:36:39] 2026-02-09 21:36:09,045 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | INFO     | update_server=False
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:36:39] 2026-02-09 21:36:09,046 | INFO     | aborting loop
[2026-02-09 22:36:39] 2026-02-09 21:36:09,325 | INFO     | all data control threads have been joined
[2026-02-09 22:36:39] 2026-02-09 21:36:09,605 | INFO     | all payload control threads have been joined
[2026-02-09 22:36:39] 2026-02-09 21:36:09,875 | INFO     | all job control threads have been joined
[2026-02-09 22:36:39] 2026-02-09 21:36:10,051 | INFO     | [job] retrieve thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,052 | INFO     | [job] queue monitor thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,053 | INFO     | [job] job monitor thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,328 | INFO     | [data] control thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,607 | INFO     | [payload] control thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,797 | INFO     | [payload] failed_post thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,844 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,880 | INFO     | [job] control thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,915 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:10,990 | INFO     | [job] validate thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:11,049 | INFO     | [data] copytool_out thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:11,066 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 22:36:39] 2026-02-09 21:36:11,117 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:11,191 | INFO     | [data] copytool_in thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:11,198 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:11,376 | INFO     | [payload] validate_post thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:15,073 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 22:36:39] 2026-02-09 21:36:21,244 | INFO     | [monitor] cgroup control has ended
[2026-02-09 22:36:39] 2026-02-09 21:36:23,272 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140398905182016)>', '<ExcThread(monitor, started 140397942646528)>']
[2026-02-09 22:36:39] 2026-02-09 21:36:28,298 | INFO     | all workflow threads have been joined
[2026-02-09 22:36:39] 2026-02-09 21:36:28,299 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 22:36:39] 2026-02-09 21:36:28,299 | INFO     | traces error code: 0
[2026-02-09 22:36:39] 2026-02-09 21:36:28,299 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 22:36:39] 2026-02-09 21:36:39,347 | INFO     | PID=468936 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 22:36:39] 2026-02-09 21:36:39,348 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 22:36:39] 2026-02-09 21:36:39,348 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 22:36:39] 2026-02-09 21:36:39,348 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 22:36:39] 2026-02-09 21:36:39,348 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 22:36:39] 2026-02-09 21:36:39,348 | INFO     | [monitor] control thread has ended
[2026-02-09 22:36:39] 2026-02-09 21:36:39,388 [wrapper] ==== pilot stdout END ====
[2026-02-09 22:36:39] 2026-02-09 21:36:39,391 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 22:36:39] 2026-02-09 21:36:39,393 [wrapper] pilotpid: 468936
[2026-02-09 22:36:39] 2026-02-09 21:36:39,395 [wrapper] Pilot exit status: 0
[2026-02-09 22:36:39] 2026-02-09 21:36:39,400 [wrapper] pandaids: 7008496072
[2026-02-09 22:36:39] 2026-02-09 21:36:39,412 [wrapper] cleanup supervisor_pilot  478736 468937
[2026-02-09 22:36:39] 2026-02-09 21:36:39,415 [wrapper] Test setup, not cleaning
[2026-02-09 22:36:39] 2026-02-09 21:36:39,417 [wrapper] apfmon messages muted
[2026-02-09 22:36:39] 2026-02-09 21:36:39,419 [wrapper] ==== wrapper stdout END ====
[2026-02-09 22:36:39] 2026-02-09 21:36:39,421 [wrapper] ==== wrapper stderr END ====
[2026-02-09 22:36:39]  *** Error codes and diagnostics ***
[2026-02-09 22:36:39]     "exeErrorCode": 0,
[2026-02-09 22:36:39]     "exeErrorDiag": "",
[2026-02-09 22:36:39]     "pilotErrorCode": 0,
[2026-02-09 22:36:39]     "pilotErrorDiag": "",
[2026-02-09 22:36:39]  *** Listing of results directory ***
[2026-02-09 22:36:39] total 944024
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 22:36:39] -rwx------ 1 boinc boinc     36322 Feb  9 03:00 runpilot2-wrapper.sh
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc      5111 Feb  9 03:04 queuedata.json
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc       100 Feb  9 19:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 22:36:39] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 19:31 run_atlas
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc       105 Feb  9 19:31 job.xml
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc 677145611 Feb  9 19:31 EVNT.48431094._000607.pool.root.1
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc    597964 Feb  9 19:31 input.tar.gz
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc     15845 Feb  9 19:31 start_atlas.sh
[2026-02-09 22:36:39] drwxrwx--x 2 boinc boinc      4096 Feb  9 19:31 shared
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc         0 Feb  9 19:31 boinc_setup_complete
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc      6208 Feb  9 19:31 init_data.xml
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc         0 Feb  9 19:31 boinc_lockfile
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc      2556 Feb  9 19:31 pandaJob.out
[2026-02-09 22:36:39] -rw------- 1 boinc boinc   1009496 Feb  9 19:31 agis_schedconf.cvmfs.json
[2026-02-09 22:36:39] -rw------- 1 boinc boinc       421 Feb  9 19:32 workernode_map.json
[2026-02-09 22:36:39] drwx------ 5 boinc boinc      4096 Feb  9 19:32 pilot3
[2026-02-09 22:36:39] -rw------- 1 boinc boinc 281774742 Feb  9 22:35 HITS.48431096._013549.pool.root.1
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc       531 Feb  9 22:35 boinc_task_state.xml
[2026-02-09 22:36:39] -rw------- 1 boinc boinc        95 Feb  9 22:35 pilot_heartbeat.json
[2026-02-09 22:36:39] -rw------- 1 boinc boinc      1014 Feb  9 22:35 memory_monitor_summary.json
[2026-02-09 22:36:39] -rw------- 1 boinc boinc   1513144 Feb  9 22:36 agis_ddmendpoints.agis.ALL.json
[2026-02-09 22:36:39] -rw------- 1 boinc boinc    350950 Feb  9 22:36 log.48431096._013549.job.log.tgz.1
[2026-02-09 22:36:39] -rw------- 1 boinc boinc      6322 Feb  9 22:36 heartbeat.json
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc      8192 Feb  9 22:36 boinc_mmap_file
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc        28 Feb  9 22:36 wrapper_checkpoint.txt
[2026-02-09 22:36:39] -rw------- 1 boinc boinc       746 Feb  9 22:36 pilotlog.txt
[2026-02-09 22:36:39] -rw------- 1 boinc boinc   1564718 Feb  9 22:36 log.48431096._013549.job.log.1
[2026-02-09 22:36:39] -rw------- 1 boinc boinc       357 Feb  9 22:36 output.list
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc       620 Feb  9 22:36 runtime_log
[2026-02-09 22:36:39] -rw------- 1 boinc boinc   1935360 Feb  9 22:36 result.tar.gz
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc      8912 Feb  9 22:36 runtime_log.err
[2026-02-09 22:36:39] -rw------- 1 boinc boinc       662 Feb  9 22:36 cq0NDmpkV98n9Rq4apOajLDm4fhM0noT9bVooX4SDmeNeKDmihsyKm.diag
[2026-02-09 22:36:39] -rw-r--r-- 1 boinc boinc     10502 Feb  9 22:36 stderr.txt
[2026-02-09 22:36:39] HITS file was successfully produced:
[2026-02-09 22:36:39] -rw------- 1 boinc boinc 281774742 Feb  9 22:35 shared/HITS.pool.root.1
[2026-02-09 22:36:39]  *** Contents of shared directory: ***
[2026-02-09 22:36:39] total 938948
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc 677145611 Feb  9 19:31 ATLAS.root_0
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc    597964 Feb  9 19:31 input.tar.gz
[2026-02-09 22:36:39] -rw-r--r-- 2 boinc boinc     15845 Feb  9 19:31 start_atlas.sh
[2026-02-09 22:36:39] -rw------- 1 boinc boinc 281774742 Feb  9 22:35 HITS.pool.root.1
[2026-02-09 22:36:39] -rw------- 1 boinc boinc   1935360 Feb  9 22:36 result.tar.gz
22:36:40 (464910): run_atlas exited; CPU time 21618.749282
22:36:40 (464910): called boinc_finish(0)

</stderr_txt>
]]>

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