Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
20:25:14 (112644): wrapper (7.7.26015): starting
20:25:14 (112644): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 20:25:14] Arguments: --nthreads 3
[2026-02-09 20:25:14] Threads: 3
[2026-02-09 20:25:14] Checking for CVMFS
[2026-02-09 20:25:14] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 20:25:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 20:25:15] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 20:25:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 20:25:15] 2.9.2.0 3520540 5082 81096 156063 0 50 26434222 36864000 0 130560 0 2166889 99.984 181638 15243 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 20:25:15] CVMFS is ok
[2026-02-09 20:25:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 20:25:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 20:25:15] Further information can be found at the LHC@home message board.
[2026-02-09 20:25:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 20:25:15] Checking for apptainer binary...
[2026-02-09 20:25:15] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 20:25:15] Running /usr/bin/apptainer --version
[2026-02-09 20:25:15] apptainer version 1.4.1-1.1
[2026-02-09 20:25:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 20:25:15] magicA246
[2026-02-09 20:25:15] apptainer works
[2026-02-09 20:25:15] Set ATHENA_PROC_NUMBER=3
[2026-02-09 20:25:15] Set ATHENA_CORE_NUMBER=3
[2026-02-09 20:25:15] Starting ATLAS job with PandaID=7008494932
[2026-02-09 20:25:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 22:21:42]  *** The last 200 lines of the pilot log: ***
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,560 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,561 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 22:21:42] 2026-02-09 21:21:09,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,561 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 22:21:42] 2026-02-09 21:21:09,561 | INFO     | job 7008494932 has completed (purged errors)
[2026-02-09 22:21:42] 2026-02-09 21:21:09,561 | INFO     | overall cleanup function is called
[2026-02-09 22:21:42] 2026-02-09 21:21:10,568 | INFO     | --- collectZombieJob: --- 10, [121122]
[2026-02-09 22:21:42] 2026-02-09 21:21:10,568 | INFO     | zombie collector waiting for pid 121122
[2026-02-09 22:21:42] 2026-02-09 21:21:10,568 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 22:21:42] 2026-02-09 21:21:10,568 | INFO     | collected zombie processes
[2026-02-09 22:21:42] 2026-02-09 21:21:10,568 | INFO     | will attempt to kill all subprocesses of pid=121122
[2026-02-09 22:21:42] 2026-02-09 21:21:10,611 | INFO     | process IDs to be killed: [121122] (in reverse order)
[2026-02-09 22:21:42] 2026-02-09 21:21:10,637 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 22:21:42] 2026-02-09 21:21:10,637 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 22:21:42] 2026-02-09 21:21:10,639 | INFO     | did not find any defunct processes belonging to 121122
[2026-02-09 22:21:42] 2026-02-09 21:21:10,640 | INFO     | did not find any defunct processes belonging to 121122
[2026-02-09 22:21:42] 2026-02-09 21:21:10,640 | INFO     | ready for new job
[2026-02-09 22:21:42] 2026-02-09 21:21:10,640 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | **************************************
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | **************************************
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | 
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | architecture information:
[2026-02-09 22:21:42] 2026-02-09 21:21:10,641 | INFO     | executing command: cat /etc/os-release
[2026-02-09 22:21:42] 2026-02-09 21:21:10,651 | INFO     | cat /etc/os-release:
[2026-02-09 22:21:42] NAME="CentOS Linux"
[2026-02-09 22:21:42] VERSION="7 (Core)"
[2026-02-09 22:21:42] ID="centos"
[2026-02-09 22:21:42] ID_LIKE="rhel fedora"
[2026-02-09 22:21:42] VERSION_ID="7"
[2026-02-09 22:21:42] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 22:21:42] ANSI_COLOR="0;31"
[2026-02-09 22:21:42] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 22:21:42] HOME_URL="https://www.centos.org/"
[2026-02-09 22:21:42] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 22:21:42] 
[2026-02-09 22:21:42] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 22:21:42] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 22:21:42] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 22:21:42] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 22:21:42] 
[2026-02-09 22:21:42] 2026-02-09 21:21:10,651 | INFO     | **************************************
[2026-02-09 22:21:42] 2026-02-09 21:21:11,154 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | INFO     | sufficient remaining disk space (374385672192 B)
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | INFO     | update_server=False
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | INFO     | aborting loop
[2026-02-09 22:21:42] 2026-02-09 21:21:11,168 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 22:21:42] 2026-02-09 21:21:11,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:21:42] 2026-02-09 21:21:11,454 | INFO     | all data control threads have been joined
[2026-02-09 22:21:42] 2026-02-09 21:21:11,934 | INFO     | all payload control threads have been joined
[2026-02-09 22:21:42] 2026-02-09 21:21:12,170 | INFO     | [job] job monitor thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,173 | INFO     | [job] retrieve thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,174 | INFO     | [job] queue monitor thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,195 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,195 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,382 | INFO     | [data] copytool_in thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,460 | INFO     | [data] control thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,490 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,687 | INFO     | all job control threads have been joined
[2026-02-09 22:21:42] 2026-02-09 21:21:12,787 | INFO     | [payload] failed_post thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,940 | INFO     | [payload] control thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:12,994 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 22:21:42] 2026-02-09 21:21:13,174 | INFO     | [data] copytool_out thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:13,313 | INFO     | [payload] validate_post thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:13,573 | INFO     | [job] validate thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:13,693 | INFO     | [job] control thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:17,001 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:21,577 | INFO     | job.realtimelogging is not enabled
[2026-02-09 22:21:42] 2026-02-09 21:21:22,583 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 22:21:42] 2026-02-09 21:21:35,000 | INFO     | [monitor] cgroup control has ended
[2026-02-09 22:21:42] 2026-02-09 21:21:35,216 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139667780106048)>', '<ExcThread(monitor, started 139666699319040)>']
[2026-02-09 22:21:42] 2026-02-09 21:21:40,242 | INFO     | all workflow threads have been joined
[2026-02-09 22:21:42] 2026-02-09 21:21:40,242 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 22:21:42] 2026-02-09 21:21:40,243 | INFO     | traces error code: 0
[2026-02-09 22:21:42] 2026-02-09 21:21:40,243 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | INFO     | PID=116691 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 22:21:42] 2026-02-09 21:21:42,006 | INFO     | [monitor] control thread has ended
[2026-02-09 22:21:42] 2026-02-09 21:21:42,057 [wrapper] ==== pilot stdout END ====
[2026-02-09 22:21:42] 2026-02-09 21:21:42,060 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 22:21:42] 2026-02-09 21:21:42,062 [wrapper] pilotpid: 116691
[2026-02-09 22:21:42] 2026-02-09 21:21:42,065 [wrapper] Pilot exit status: 0
[2026-02-09 22:21:42] 2026-02-09 21:21:42,073 [wrapper] pandaids: 7008494932
[2026-02-09 22:21:42] 2026-02-09 21:21:42,090 [wrapper] cleanup supervisor_pilot  126744 116692
[2026-02-09 22:21:42] 2026-02-09 21:21:42,093 [wrapper] Test setup, not cleaning
[2026-02-09 22:21:42] 2026-02-09 21:21:42,096 [wrapper] apfmon messages muted
[2026-02-09 22:21:42] 2026-02-09 21:21:42,098 [wrapper] ==== wrapper stdout END ====
[2026-02-09 22:21:42] 2026-02-09 21:21:42,101 [wrapper] ==== wrapper stderr END ====
[2026-02-09 22:21:42]  *** Error codes and diagnostics ***
[2026-02-09 22:21:42]     "exeErrorCode": 0,
[2026-02-09 22:21:42]     "exeErrorDiag": "",
[2026-02-09 22:21:42]     "pilotErrorCode": 0,
[2026-02-09 22:21:42]     "pilotErrorDiag": "",
[2026-02-09 22:21:42]  *** Listing of results directory ***
[2026-02-09 22:21:42] total 933172
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc      5111 Feb  9 02:57 queuedata.json
[2026-02-09 22:21:42] -rwx------ 1 boinc boinc     36322 Feb  9 02:57 runpilot2-wrapper.sh
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc       100 Feb  9 20:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 22:21:42] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 20:25 run_atlas
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc       105 Feb  9 20:25 job.xml
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc 676522687 Feb  9 20:25 EVNT.48431094._000597.pool.root.1
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc    597954 Feb  9 20:25 input.tar.gz
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc     15845 Feb  9 20:25 start_atlas.sh
[2026-02-09 22:21:42] drwxrwx--x 2 boinc boinc      4096 Feb  9 20:25 shared
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc         0 Feb  9 20:25 boinc_setup_complete
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc      6448 Feb  9 20:25 init_data.xml
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc         0 Feb  9 20:25 boinc_lockfile
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc      2555 Feb  9 20:25 pandaJob.out
[2026-02-09 22:21:42] -rw------- 1 boinc boinc   1009496 Feb  9 20:25 agis_schedconf.cvmfs.json
[2026-02-09 22:21:42] -rw------- 1 boinc boinc   1513144 Feb  9 20:25 agis_ddmendpoints.agis.ALL.json
[2026-02-09 22:21:42] -rw------- 1 boinc boinc       425 Feb  9 20:25 workernode_map.json
[2026-02-09 22:21:42] drwx------ 5 boinc boinc      4096 Feb  9 20:25 pilot3
[2026-02-09 22:21:42] -rw------- 1 boinc boinc 272548370 Feb  9 22:20 HITS.48431096._013033.pool.root.1
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc       530 Feb  9 22:20 boinc_task_state.xml
[2026-02-09 22:21:42] -rw------- 1 boinc boinc        95 Feb  9 22:20 pilot_heartbeat.json
[2026-02-09 22:21:42] -rw------- 1 boinc boinc      1016 Feb  9 22:21 memory_monitor_summary.json
[2026-02-09 22:21:42] -rw------- 1 boinc boinc    288336 Feb  9 22:21 log.48431096._013033.job.log.tgz.1
[2026-02-09 22:21:42] -rw------- 1 boinc boinc      6307 Feb  9 22:21 heartbeat.json
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc      8192 Feb  9 22:21 boinc_mmap_file
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc        27 Feb  9 22:21 wrapper_checkpoint.txt
[2026-02-09 22:21:42] -rw------- 1 boinc boinc       746 Feb  9 22:21 pilotlog.txt
[2026-02-09 22:21:42] -rw------- 1 boinc boinc    998232 Feb  9 22:21 log.48431096._013033.job.log.1
[2026-02-09 22:21:42] -rw------- 1 boinc boinc       357 Feb  9 22:21 output.list
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc       620 Feb  9 22:21 runtime_log
[2026-02-09 22:21:42] -rw------- 1 boinc boinc   1300480 Feb  9 22:21 result.tar.gz
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc      8911 Feb  9 22:21 runtime_log.err
[2026-02-09 22:21:42] -rw------- 1 boinc boinc       660 Feb  9 22:21 BwQLDmrhV98n9Rq4apOajLDm4fhM0noT9bVooX4SDm5EeKDmr5cYjn.diag
[2026-02-09 22:21:42] -rw-r--r-- 1 boinc boinc     12119 Feb  9 22:21 stderr.txt
[2026-02-09 22:21:42] HITS file was successfully produced:
[2026-02-09 22:21:42] -rw------- 1 boinc boinc 272548370 Feb  9 22:20 shared/HITS.pool.root.1
[2026-02-09 22:21:42]  *** Contents of shared directory: ***
[2026-02-09 22:21:42] total 928712
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc 676522687 Feb  9 20:25 ATLAS.root_0
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc    597954 Feb  9 20:25 input.tar.gz
[2026-02-09 22:21:42] -rw-r--r-- 2 boinc boinc     15845 Feb  9 20:25 start_atlas.sh
[2026-02-09 22:21:42] -rw------- 1 boinc boinc 272548370 Feb  9 22:20 HITS.pool.root.1
[2026-02-09 22:21:42] -rw------- 1 boinc boinc   1300480 Feb  9 22:21 result.tar.gz
22:21:43 (112644): run_atlas exited; CPU time 20137.592647
22:21:43 (112644): called boinc_finish(0)

</stderr_txt>
]]>

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