Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
19:11:11 (380382): wrapper (7.7.26015): starting
19:11:11 (380382): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 19:11:11] Arguments: --nthreads 4
[2026-02-09 19:11:11] Threads: 4
[2026-02-09 19:11:11] Checking for CVMFS
[2026-02-09 19:11:12] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 19:11:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 19:11:12] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 19:11:12] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 19:11:12] 2.9.2.0 3731233 4967 93484 156060 2 50 25398126 36864000 0 130560 0 2361687 99.980 311429 2511 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 19:11:12] CVMFS is ok
[2026-02-09 19:11:12] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 19:11:12] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 19:11:12] Further information can be found at the LHC@home message board.
[2026-02-09 19:11:12] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 19:11:12] Checking for apptainer binary...
[2026-02-09 19:11:12] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 19:11:12] Running /usr/bin/apptainer --version
[2026-02-09 19:11:12] apptainer version 1.4.1-1.1
[2026-02-09 19:11:12] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 19:11:12] thA332a
[2026-02-09 19:11:12] apptainer works
[2026-02-09 19:11:12] Set ATHENA_PROC_NUMBER=4
[2026-02-09 19:11:12] Set ATHENA_CORE_NUMBER=4
[2026-02-09 19:11:12] Starting ATLAS job with PandaID=7006161263
[2026-02-09 19:11:12] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 20:57:56]  *** The last 200 lines of the pilot log: ***
[2026-02-09 20:57:56] 2026-02-09 19:57:25,772 | INFO     | will attempt to kill all subprocesses of pid=389033
[2026-02-09 20:57:56] 2026-02-09 19:57:25,815 | INFO     | process IDs to be killed: [389033] (in reverse order)
[2026-02-09 20:57:56] 2026-02-09 19:57:25,848 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 20:57:56] 2026-02-09 19:57:25,848 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 20:57:56] 2026-02-09 19:57:25,850 | INFO     | did not find any defunct processes belonging to 389033
[2026-02-09 20:57:56] 2026-02-09 19:57:25,851 | INFO     | did not find any defunct processes belonging to 389033
[2026-02-09 20:57:56] 2026-02-09 19:57:25,851 | INFO     | ready for new job
[2026-02-09 20:57:56] 2026-02-09 19:57:25,851 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 20:57:56] 2026-02-09 19:57:25,852 | INFO     | **************************************
[2026-02-09 20:57:56] 2026-02-09 19:57:25,852 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 20:57:56] 2026-02-09 19:57:25,852 | INFO     | **************************************
[2026-02-09 20:57:56] 2026-02-09 19:57:25,852 | INFO     | 
[2026-02-09 20:57:56] 2026-02-09 19:57:25,853 | INFO     | architecture information:
[2026-02-09 20:57:56] 2026-02-09 19:57:25,853 | INFO     | executing command: cat /etc/os-release
[2026-02-09 20:57:56] 2026-02-09 19:57:25,867 | INFO     | cat /etc/os-release:
[2026-02-09 20:57:56] NAME="CentOS Linux"
[2026-02-09 20:57:56] VERSION="7 (Core)"
[2026-02-09 20:57:56] ID="centos"
[2026-02-09 20:57:56] ID_LIKE="rhel fedora"
[2026-02-09 20:57:56] VERSION_ID="7"
[2026-02-09 20:57:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 20:57:56] ANSI_COLOR="0;31"
[2026-02-09 20:57:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 20:57:56] HOME_URL="https://www.centos.org/"
[2026-02-09 20:57:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 20:57:56] 
[2026-02-09 20:57:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 20:57:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 20:57:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 20:57:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 20:57:56] 
[2026-02-09 20:57:56] 2026-02-09 19:57:25,867 | INFO     | **************************************
[2026-02-09 20:57:56] 2026-02-09 19:57:26,370 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 20:57:56] 2026-02-09 19:57:26,389 | INFO     | sufficient remaining disk space (330158833664 B)
[2026-02-09 20:57:56] 2026-02-09 19:57:26,389 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 20:57:56] 2026-02-09 19:57:26,389 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 20:57:56] 2026-02-09 19:57:26,389 | INFO     | update_server=False
[2026-02-09 20:57:56] 2026-02-09 19:57:26,389 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 20:57:56] 2026-02-09 19:57:26,549 | INFO     | all job control threads have been joined
[2026-02-09 20:57:56] 2026-02-09 19:57:26,705 | INFO     | all data control threads have been joined
[2026-02-09 20:57:56] 2026-02-09 19:57:26,795 | INFO     | all payload control threads have been joined
[2026-02-09 20:57:56] 2026-02-09 19:57:26,843 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 20:57:56] 2026-02-09 19:57:27,222 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 20:57:56] 2026-02-09 19:57:27,222 | INFO     | aborting loop
[2026-02-09 20:57:56] 2026-02-09 19:57:27,374 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 20:57:56] 2026-02-09 19:57:27,395 | INFO     | [job] retrieve thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,416 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,500 | INFO     | job.realtimelogging is not enabled
[2026-02-09 20:57:56] 2026-02-09 19:57:27,529 | INFO     | [payload] failed_post thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,555 | INFO     | [job] control thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,612 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,711 | INFO     | [data] control thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,717 | INFO     | [data] copytool_in thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:27,800 | INFO     | [payload] control thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,035 | INFO     | [payload] validate_post thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,228 | INFO     | [job] job monitor thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,506 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,711 | INFO     | [job] validate thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,850 | INFO     | [data] copytool_out thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:28,861 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:29,330 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 20:57:56] 2026-02-09 19:57:30,336 | INFO     | [job] queue monitor thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:31,381 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 20:57:56] 2026-02-09 19:57:31,918 | INFO     | [monitor] cgroup control has ended
[2026-02-09 20:57:56] 2026-02-09 19:57:32,959 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140111467976512)>', '<ExcThread(monitor, started 140110725101312)>']
[2026-02-09 20:57:56] 2026-02-09 19:57:37,984 | INFO     | all workflow threads have been joined
[2026-02-09 20:57:56] 2026-02-09 19:57:37,985 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 20:57:56] 2026-02-09 19:57:37,985 | INFO     | traces error code: 0
[2026-02-09 20:57:56] 2026-02-09 19:57:37,985 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 20:57:56] 2026-02-09 19:57:56,787 | INFO     | PID=384489 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 20:57:56] 2026-02-09 19:57:56,788 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 20:57:56] 2026-02-09 19:57:56,788 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 20:57:56] 2026-02-09 19:57:56,788 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 20:57:56] 2026-02-09 19:57:56,788 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 20:57:56] 2026-02-09 19:57:56,788 | INFO     | [monitor] control thread has ended
[2026-02-09 20:57:56] 2026-02-09 19:57:56,865 [wrapper] ==== pilot stdout END ====
[2026-02-09 20:57:56] 2026-02-09 19:57:56,869 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 20:57:56] 2026-02-09 19:57:56,873 [wrapper] pilotpid: 384489
[2026-02-09 20:57:56] 2026-02-09 19:57:56,877 [wrapper] Pilot exit status: 0
[2026-02-09 20:57:56] 2026-02-09 19:57:56,889 [wrapper] pandaids: 7006161263
[2026-02-09 20:57:56] 2026-02-09 19:57:56,911 [wrapper] cleanup supervisor_pilot  394489 384490
[2026-02-09 20:57:56] 2026-02-09 19:57:56,915 [wrapper] Test setup, not cleaning
[2026-02-09 20:57:56] 2026-02-09 19:57:56,920 [wrapper] apfmon messages muted
[2026-02-09 20:57:56] 2026-02-09 19:57:56,924 [wrapper] ==== wrapper stdout END ====
[2026-02-09 20:57:56] 2026-02-09 19:57:56,928 [wrapper] ==== wrapper stderr END ====
[2026-02-09 20:57:56]  *** Error codes and diagnostics ***
[2026-02-09 20:57:56]     "exeErrorCode": 0,
[2026-02-09 20:57:56]     "exeErrorDiag": "",
[2026-02-09 20:57:56]     "pilotErrorCode": 0,
[2026-02-09 20:57:56]     "pilotErrorDiag": "",
[2026-02-09 20:57:56]  *** Listing of results directory ***
[2026-02-09 20:57:56] total 942532
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 20:57:56] -rwx------ 1 boinc boinc     36322 Feb  9 02:58 runpilot2-wrapper.sh
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc      5111 Feb  9 03:01 queuedata.json
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc       100 Feb  9 19:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 20:57:56] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 19:11 run_atlas
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc       105 Feb  9 19:11 job.xml
[2026-02-09 20:57:56] -rw-r--r-- 2 boinc boinc 677135743 Feb  9 19:11 EVNT.48508760._000037.pool.root.1
[2026-02-09 20:57:56] -rw-r--r-- 2 boinc boinc    597949 Feb  9 19:11 input.tar.gz
[2026-02-09 20:57:56] -rw-r--r-- 2 boinc boinc     15845 Feb  9 19:11 start_atlas.sh
[2026-02-09 20:57:56] drwxrwx--x 2 boinc boinc      4096 Feb  9 19:11 shared
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc         0 Feb  9 19:11 boinc_setup_complete
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc      6370 Feb  9 19:11 init_data.xml
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc         0 Feb  9 19:11 boinc_lockfile
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc      2547 Feb  9 19:11 pandaJob.out
[2026-02-09 20:57:56] -rw------- 1 boinc boinc   1009496 Feb  9 19:11 agis_schedconf.cvmfs.json
[2026-02-09 20:57:56] -rw------- 1 boinc boinc   1513144 Feb  9 19:11 agis_ddmendpoints.agis.ALL.json
[2026-02-09 20:57:56] -rw------- 1 boinc boinc       422 Feb  9 19:11 workernode_map.json
[2026-02-09 20:57:56] drwx------ 5 boinc boinc      4096 Feb  9 19:11 pilot3
[2026-02-09 20:57:56] -rw------- 1 boinc boinc 281663087 Feb  9 20:56 HITS.48508763._001849.pool.root.1
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc       530 Feb  9 20:57 boinc_task_state.xml
[2026-02-09 20:57:56] -rw------- 1 boinc boinc      1022 Feb  9 20:57 memory_monitor_summary.json
[2026-02-09 20:57:56] -rw------- 1 boinc boinc    295493 Feb  9 20:57 log.48508763._001849.job.log.tgz.1
[2026-02-09 20:57:56] -rw------- 1 boinc boinc      6309 Feb  9 20:57 heartbeat.json
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc        27 Feb  9 20:57 wrapper_checkpoint.txt
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc      8192 Feb  9 20:57 boinc_mmap_file
[2026-02-09 20:57:56] -rw------- 1 boinc boinc       746 Feb  9 20:57 pilotlog.txt
[2026-02-09 20:57:56] -rw------- 1 boinc boinc        95 Feb  9 20:57 pilot_heartbeat.json
[2026-02-09 20:57:56] -rw------- 1 boinc boinc    917644 Feb  9 20:57 log.48508763._001849.job.log.1
[2026-02-09 20:57:56] -rw------- 1 boinc boinc       357 Feb  9 20:57 output.list
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc       620 Feb  9 20:57 runtime_log
[2026-02-09 20:57:56] -rw------- 1 boinc boinc   1228800 Feb  9 20:57 result.tar.gz
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc      8901 Feb  9 20:57 runtime_log.err
[2026-02-09 20:57:56] -rw------- 1 boinc boinc       658 Feb  9 20:57 7oRNDmdiV98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmJweKDmg6FUqm.diag
[2026-02-09 20:57:56] -rw-r--r-- 1 boinc boinc     10279 Feb  9 20:57 stderr.txt
[2026-02-09 20:57:56] HITS file was successfully produced:
[2026-02-09 20:57:57] -rw------- 1 boinc boinc 281663087 Feb  9 20:56 shared/HITS.pool.root.1
[2026-02-09 20:57:57]  *** Contents of shared directory: ***
[2026-02-09 20:57:57] total 938140
[2026-02-09 20:57:57] -rw-r--r-- 2 boinc boinc 677135743 Feb  9 19:11 ATLAS.root_0
[2026-02-09 20:57:57] -rw-r--r-- 2 boinc boinc    597949 Feb  9 19:11 input.tar.gz
[2026-02-09 20:57:57] -rw-r--r-- 2 boinc boinc     15845 Feb  9 19:11 start_atlas.sh
[2026-02-09 20:57:57] -rw------- 1 boinc boinc 281663087 Feb  9 20:56 HITS.pool.root.1
[2026-02-09 20:57:57] -rw------- 1 boinc boinc   1228800 Feb  9 20:57 result.tar.gz
20:57:58 (380382): run_atlas exited; CPU time 24260.800191
20:57:58 (380382): called boinc_finish(0)

</stderr_txt>
]]>

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