Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
17:25:40 (365997): wrapper (7.7.26015): starting
17:25:40 (365997): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 17:25:40] Arguments: --nthreads 4
[2026-02-09 17:25:40] Threads: 4
[2026-02-09 17:25:40] Checking for CVMFS
[2026-02-09 17:25:40] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 17:25:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 17:25:40] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 17:25:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 17:25:41] 2.9.2.0 3731233 4862 94588 156056 0 50 25372840 36864000 0 130560 0 2321339 99.980 304884 2462 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 17:25:41] CVMFS is ok
[2026-02-09 17:25:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 17:25:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 17:25:41] Further information can be found at the LHC@home message board.
[2026-02-09 17:25:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 17:25:41] Checking for apptainer binary...
[2026-02-09 17:25:41] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 17:25:41] Running /usr/bin/apptainer --version
[2026-02-09 17:25:41] apptainer version 1.4.1-1.1
[2026-02-09 17:25:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 17:25:41] thA332a
[2026-02-09 17:25:41] apptainer works
[2026-02-09 17:25:41] Set ATHENA_PROC_NUMBER=4
[2026-02-09 17:25:41] Set ATHENA_CORE_NUMBER=4
[2026-02-09 17:25:41] Starting ATLAS job with PandaID=7008495980
[2026-02-09 17:25:41] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 19:11:06]  *** The last 200 lines of the pilot log: ***
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,816 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 19:11:06] 2026-02-09 18:10:33,817 | INFO     | job 7008495980 has completed (purged errors)
[2026-02-09 19:11:06] 2026-02-09 18:10:33,817 | INFO     | overall cleanup function is called
[2026-02-09 19:11:06] 2026-02-09 18:10:34,824 | INFO     | --- collectZombieJob: --- 10, [374641]
[2026-02-09 19:11:06] 2026-02-09 18:10:34,824 | INFO     | zombie collector waiting for pid 374641
[2026-02-09 19:11:06] 2026-02-09 18:10:34,824 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 19:11:06] 2026-02-09 18:10:34,824 | INFO     | collected zombie processes
[2026-02-09 19:11:06] 2026-02-09 18:10:34,824 | INFO     | will attempt to kill all subprocesses of pid=374641
[2026-02-09 19:11:06] 2026-02-09 18:10:34,867 | INFO     | process IDs to be killed: [374641] (in reverse order)
[2026-02-09 19:11:06] 2026-02-09 18:10:34,901 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 19:11:06] 2026-02-09 18:10:34,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 19:11:06] 2026-02-09 18:10:34,903 | INFO     | did not find any defunct processes belonging to 374641
[2026-02-09 19:11:06] 2026-02-09 18:10:34,904 | INFO     | did not find any defunct processes belonging to 374641
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | ready for new job
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | **************************************
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | **************************************
[2026-02-09 19:11:06] 2026-02-09 18:10:34,905 | INFO     | 
[2026-02-09 19:11:06] 2026-02-09 18:10:34,906 | INFO     | architecture information:
[2026-02-09 19:11:06] 2026-02-09 18:10:34,906 | INFO     | executing command: cat /etc/os-release
[2026-02-09 19:11:06] 2026-02-09 18:10:34,920 | INFO     | cat /etc/os-release:
[2026-02-09 19:11:06] NAME="CentOS Linux"
[2026-02-09 19:11:06] VERSION="7 (Core)"
[2026-02-09 19:11:06] ID="centos"
[2026-02-09 19:11:06] ID_LIKE="rhel fedora"
[2026-02-09 19:11:06] VERSION_ID="7"
[2026-02-09 19:11:06] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 19:11:06] ANSI_COLOR="0;31"
[2026-02-09 19:11:06] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 19:11:06] HOME_URL="https://www.centos.org/"
[2026-02-09 19:11:06] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 19:11:06] 
[2026-02-09 19:11:06] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 19:11:06] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 19:11:06] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 19:11:06] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 19:11:06] 
[2026-02-09 19:11:06] 2026-02-09 18:10:34,920 | INFO     | **************************************
[2026-02-09 19:11:06] 2026-02-09 18:10:35,424 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 19:11:06] 2026-02-09 18:10:35,442 | INFO     | sufficient remaining disk space (330001547264 B)
[2026-02-09 19:11:06] 2026-02-09 18:10:35,443 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 19:11:06] 2026-02-09 18:10:35,443 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 19:11:06] 2026-02-09 18:10:35,443 | INFO     | update_server=False
[2026-02-09 19:11:06] 2026-02-09 18:10:35,443 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 19:11:06] 2026-02-09 18:10:35,443 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 19:11:06] 2026-02-09 18:10:35,488 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 19:11:06] 2026-02-09 18:10:35,488 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 19:11:06] 2026-02-09 18:10:35,488 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 19:11:06] 2026-02-09 18:10:35,488 | INFO     | will abort loop
[2026-02-09 19:11:06] 2026-02-09 18:10:35,489 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 19:11:06] 2026-02-09 18:10:35,672 | INFO     | all payload control threads have been joined
[2026-02-09 19:11:06] 2026-02-09 18:10:35,974 | INFO     | all data control threads have been joined
[2026-02-09 19:11:06] 2026-02-09 18:10:36,448 | INFO     | [job] retrieve thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,452 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,494 | INFO     | [job] job monitor thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,495 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,606 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,607 | INFO     | all job control threads have been joined
[2026-02-09 19:11:06] 2026-02-09 18:10:36,618 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,669 | INFO     | [data] copytool_in thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,678 | INFO     | [payload] control thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:36,980 | INFO     | [data] control thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:37,160 | INFO     | [payload] validate_post thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:37,495 | INFO     | [data] copytool_out thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:37,613 | INFO     | [job] control thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:37,614 | INFO     | [payload] failed_post thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:37,801 | INFO     | [job] validate thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:38,369 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 19:11:06] 2026-02-09 18:10:39,375 | INFO     | [job] queue monitor thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:39,450 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 19:11:06] 2026-02-09 18:10:48,667 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-09 19:11:06] 2026-02-09 18:11:01,299 | INFO     | [monitor] cgroup control has ended
[2026-02-09 19:11:06] 2026-02-09 18:11:01,400 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139945798092608)>', '<ExcThread(monitor, started 139944697771776)>']
[2026-02-09 19:11:06] 2026-02-09 18:11:04,935 | INFO     | PID=370130 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 19:11:06] 2026-02-09 18:11:04,935 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 19:11:06] 2026-02-09 18:11:04,935 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 19:11:06] 2026-02-09 18:11:04,935 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 19:11:06] 2026-02-09 18:11:04,936 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 19:11:06] 2026-02-09 18:11:04,936 | INFO     | [monitor] control thread has ended
[2026-02-09 19:11:06] 2026-02-09 18:11:06,426 | INFO     | all workflow threads have been joined
[2026-02-09 19:11:06] 2026-02-09 18:11:06,426 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 19:11:06] 2026-02-09 18:11:06,426 | INFO     | traces error code: 0
[2026-02-09 19:11:06] 2026-02-09 18:11:06,426 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 19:11:06] 2026-02-09 18:11:06,507 [wrapper] ==== pilot stdout END ====
[2026-02-09 19:11:06] 2026-02-09 18:11:06,511 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 19:11:06] 2026-02-09 18:11:06,515 [wrapper] pilotpid: 370130
[2026-02-09 19:11:06] 2026-02-09 18:11:06,519 [wrapper] Pilot exit status: 0
[2026-02-09 19:11:06] 2026-02-09 18:11:06,531 [wrapper] pandaids: 7008495980
[2026-02-09 19:11:06] 2026-02-09 18:11:06,553 [wrapper] cleanup supervisor_pilot  380317 370131
[2026-02-09 19:11:06] 2026-02-09 18:11:06,557 [wrapper] Test setup, not cleaning
[2026-02-09 19:11:06] 2026-02-09 18:11:06,560 [wrapper] apfmon messages muted
[2026-02-09 19:11:06] 2026-02-09 18:11:06,565 [wrapper] ==== wrapper stdout END ====
[2026-02-09 19:11:06] 2026-02-09 18:11:06,569 [wrapper] ==== wrapper stderr END ====
[2026-02-09 19:11:06]  *** Error codes and diagnostics ***
[2026-02-09 19:11:06]     "exeErrorCode": 0,
[2026-02-09 19:11:06]     "exeErrorDiag": "",
[2026-02-09 19:11:06]     "pilotErrorCode": 0,
[2026-02-09 19:11:06]     "pilotErrorDiag": "",
[2026-02-09 19:11:06]  *** Listing of results directory ***
[2026-02-09 19:11:06] total 937776
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 19:11:06] -rwx------ 1 boinc boinc     36322 Feb  9 02:57 runpilot2-wrapper.sh
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc      5111 Feb  9 02:59 queuedata.json
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc       100 Feb  9 17:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 19:11:06] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 17:25 run_atlas
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc       105 Feb  9 17:25 job.xml
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc 677145182 Feb  9 17:25 EVNT.48431094._000605.pool.root.1
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc    597962 Feb  9 17:25 input.tar.gz
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc     15845 Feb  9 17:25 start_atlas.sh
[2026-02-09 19:11:06] drwxrwx--x 2 boinc boinc      4096 Feb  9 17:25 shared
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc         0 Feb  9 17:25 boinc_setup_complete
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc      6370 Feb  9 17:25 init_data.xml
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc         0 Feb  9 17:25 boinc_lockfile
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc      2556 Feb  9 17:25 pandaJob.out
[2026-02-09 19:11:06] -rw------- 1 boinc boinc   1009480 Feb  9 17:25 agis_schedconf.cvmfs.json
[2026-02-09 19:11:06] -rw------- 1 boinc boinc   1513144 Feb  9 17:25 agis_ddmendpoints.agis.ALL.json
[2026-02-09 19:11:06] -rw------- 1 boinc boinc       428 Feb  9 17:25 workernode_map.json
[2026-02-09 19:11:06] drwx------ 5 boinc boinc      4096 Feb  9 17:25 pilot3
[2026-02-09 19:11:06] -rw------- 1 boinc boinc 276742224 Feb  9 19:10 HITS.48431096._013457.pool.root.1
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc       530 Feb  9 19:10 boinc_task_state.xml
[2026-02-09 19:11:06] -rw------- 1 boinc boinc        95 Feb  9 19:10 pilot_heartbeat.json
[2026-02-09 19:11:06] -rw------- 1 boinc boinc      1020 Feb  9 19:10 memory_monitor_summary.json
[2026-02-09 19:11:06] -rw------- 1 boinc boinc    322559 Feb  9 19:10 log.48431096._013457.job.log.tgz.1
[2026-02-09 19:11:06] -rw------- 1 boinc boinc      6313 Feb  9 19:10 heartbeat.json
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc      8192 Feb  9 19:10 boinc_mmap_file
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc        27 Feb  9 19:10 wrapper_checkpoint.txt
[2026-02-09 19:11:06] -rw------- 1 boinc boinc      4933 Feb  9 19:11 pilotlog.txt
[2026-02-09 19:11:06] -rw------- 1 boinc boinc    907656 Feb  9 19:11 log.48431096._013457.job.log.1
[2026-02-09 19:11:06] -rw------- 1 boinc boinc       357 Feb  9 19:11 output.list
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc       620 Feb  9 19:11 runtime_log
[2026-02-09 19:11:06] -rw------- 1 boinc boinc   1249280 Feb  9 19:11 result.tar.gz
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc      8901 Feb  9 19:11 runtime_log.err
[2026-02-09 19:11:06] -rw------- 1 boinc boinc       658 Feb  9 19:11 8BDODmEiV98n9Rq4apOajLDm4fhM0noT9bVooX4SDmLIeKDmBclopn.diag
[2026-02-09 19:11:06] -rw-r--r-- 1 boinc boinc     12865 Feb  9 19:11 stderr.txt
[2026-02-09 19:11:06] HITS file was successfully produced:
[2026-02-09 19:11:06] -rw------- 1 boinc boinc 276742224 Feb  9 19:10 shared/HITS.pool.root.1
[2026-02-09 19:11:06]  *** Contents of shared directory: ***
[2026-02-09 19:11:06] total 933364
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc 677145182 Feb  9 17:25 ATLAS.root_0
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc    597962 Feb  9 17:25 input.tar.gz
[2026-02-09 19:11:06] -rw-r--r-- 2 boinc boinc     15845 Feb  9 17:25 start_atlas.sh
[2026-02-09 19:11:06] -rw------- 1 boinc boinc 276742224 Feb  9 19:10 HITS.pool.root.1
[2026-02-09 19:11:06] -rw------- 1 boinc boinc   1249280 Feb  9 19:11 result.tar.gz
19:11:08 (365997): run_atlas exited; CPU time 24071.394382
19:11:08 (365997): called boinc_finish(0)

</stderr_txt>
]]>

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