Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:59:58 (3729140): wrapper (7.7.26015): starting
23:59:58 (3729140): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 23:59:58] Arguments: --nthreads 3
[2026-02-09 23:59:58] Threads: 3
[2026-02-09 23:59:58] Checking for CVMFS
[2026-02-09 23:59:58] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 23:59:58] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 23:59:58] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 23:59:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 23:59:58] 2.9.2.0 2962440 5184 79136 156067 1 50 27297758 36864000 0 130560 0 2207082 99.984 182598 7838 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 23:59:58] CVMFS is ok
[2026-02-09 23:59:58] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 23:59:58] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 23:59:58] Further information can be found at the LHC@home message board.
[2026-02-09 23:59:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 23:59:58] Checking for apptainer binary...
[2026-02-09 23:59:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 23:59:58] Running /usr/bin/apptainer --version
[2026-02-09 23:59:58] apptainer version 1.4.1-1.1
[2026-02-09 23:59:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 23:59:58] magicA161a
[2026-02-09 23:59:58] apptainer works
[2026-02-09 23:59:58] Set ATHENA_PROC_NUMBER=3
[2026-02-09 23:59:58] Set ATHENA_CORE_NUMBER=3
[2026-02-09 23:59:59] Starting ATLAS job with PandaID=7008632837
[2026-02-09 23:59:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-10 01:58:44]  *** The last 200 lines of the pilot log: ***
[2026-02-10 01:58:44] 2026-02-10 00:58:10,010 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | job 7008632837 has completed (purged errors)
[2026-02-10 01:58:44] 2026-02-10 00:58:10,011 | INFO     | overall cleanup function is called
[2026-02-10 01:58:44] 2026-02-10 00:58:11,017 | INFO     | --- collectZombieJob: --- 10, [3738072]
[2026-02-10 01:58:44] 2026-02-10 00:58:11,018 | INFO     | zombie collector waiting for pid 3738072
[2026-02-10 01:58:44] 2026-02-10 00:58:11,018 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-10 01:58:44] 2026-02-10 00:58:11,018 | INFO     | collected zombie processes
[2026-02-10 01:58:44] 2026-02-10 00:58:11,018 | INFO     | will attempt to kill all subprocesses of pid=3738072
[2026-02-10 01:58:44] 2026-02-10 00:58:11,058 | INFO     | process IDs to be killed: [3738072] (in reverse order)
[2026-02-10 01:58:44] 2026-02-10 00:58:11,081 | WARNING  | found no corresponding commands to process id(s)
[2026-02-10 01:58:44] 2026-02-10 00:58:11,082 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-10 01:58:44] 2026-02-10 00:58:11,083 | INFO     | did not find any defunct processes belonging to 3738072
[2026-02-10 01:58:44] 2026-02-10 00:58:11,084 | INFO     | did not find any defunct processes belonging to 3738072
[2026-02-10 01:58:44] 2026-02-10 00:58:11,084 | INFO     | ready for new job
[2026-02-10 01:58:44] 2026-02-10 00:58:11,084 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | **************************************
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | **************************************
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | 
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | architecture information:
[2026-02-10 01:58:44] 2026-02-10 00:58:11,085 | INFO     | executing command: cat /etc/os-release
[2026-02-10 01:58:44] 2026-02-10 00:58:11,093 | INFO     | cat /etc/os-release:
[2026-02-10 01:58:44] NAME="CentOS Linux"
[2026-02-10 01:58:44] VERSION="7 (Core)"
[2026-02-10 01:58:44] ID="centos"
[2026-02-10 01:58:44] ID_LIKE="rhel fedora"
[2026-02-10 01:58:44] VERSION_ID="7"
[2026-02-10 01:58:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-10 01:58:44] ANSI_COLOR="0;31"
[2026-02-10 01:58:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-10 01:58:44] HOME_URL="https://www.centos.org/"
[2026-02-10 01:58:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-10 01:58:44] 
[2026-02-10 01:58:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-10 01:58:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-10 01:58:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-10 01:58:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-10 01:58:44] 
[2026-02-10 01:58:44] 2026-02-10 00:58:11,093 | INFO     | **************************************
[2026-02-10 01:58:44] 2026-02-10 00:58:11,597 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | INFO     | sufficient remaining disk space (373094875136 B)
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | INFO     | current server update state: UPDATING_FINAL
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | INFO     | update_server=False
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | INFO     | aborting loop
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-10 01:58:44] 2026-02-10 00:58:11,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-10 01:58:44] 2026-02-10 00:58:12,387 | INFO     | all data control threads have been joined
[2026-02-10 01:58:44] 2026-02-10 00:58:12,514 | INFO     | all job control threads have been joined
[2026-02-10 01:58:44] 2026-02-10 00:58:12,537 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-10 01:58:44] 2026-02-10 00:58:12,615 | INFO     | [job] retrieve thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:12,615 | INFO     | [job] job monitor thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:12,615 | INFO     | [job] queue monitor thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:12,615 | INFO     | [data] copytool_in thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:12,738 | INFO     | [payload] failed_post thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:12,945 | INFO     | all payload control threads have been joined
[2026-02-10 01:58:44] 2026-02-10 00:58:13,393 | INFO     | [data] control thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,505 | INFO     | [payload] execute_payloads thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,520 | INFO     | [job] control thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,827 | INFO     | [payload] validate_post thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,843 | INFO     | [job] validate thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,951 | INFO     | [payload] control thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,978 | INFO     | [job] create_data_payload thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:13,979 | INFO     | [payload] validate_pre thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:14,543 | INFO     | [data] copytool_out thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:14,827 | INFO     | job.realtimelogging is not enabled
[2026-02-10 01:58:44] 2026-02-10 00:58:15,616 | INFO     | [data] queue_monitor thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:15,833 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-10 01:58:44] 2026-02-10 00:58:39,276 | INFO     | [monitor] cgroup control has ended
[2026-02-10 01:58:44] 2026-02-10 00:58:39,483 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139762757207872)>', '<ExcThread(monitor, started 139762483873536)>']
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | INFO     | PID=3733647 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | INFO     | found 0 job(s) in 20 queues
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-10 01:58:44] 2026-02-10 00:58:42,353 | INFO     | [monitor] control thread has ended
[2026-02-10 01:58:44] 2026-02-10 00:58:44,509 | INFO     | all workflow threads have been joined
[2026-02-10 01:58:44] 2026-02-10 00:58:44,509 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-10 01:58:44] 2026-02-10 00:58:44,509 | INFO     | traces error code: 0
[2026-02-10 01:58:44] 2026-02-10 00:58:44,509 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-10 01:58:44] 2026-02-10 00:58:44,559 [wrapper] ==== pilot stdout END ====
[2026-02-10 01:58:44] 2026-02-10 00:58:44,561 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-10 01:58:44] 2026-02-10 00:58:44,564 [wrapper] pilotpid: 3733647
[2026-02-10 01:58:44] 2026-02-10 00:58:44,566 [wrapper] Pilot exit status: 0
[2026-02-10 01:58:44] 2026-02-10 00:58:44,573 [wrapper] pandaids: 7008632837
[2026-02-10 01:58:44] 2026-02-10 00:58:44,589 [wrapper] cleanup supervisor_pilot 3743449 3733648
[2026-02-10 01:58:44] 2026-02-10 00:58:44,591 [wrapper] Test setup, not cleaning
[2026-02-10 01:58:44] 2026-02-10 00:58:44,594 [wrapper] apfmon messages muted
[2026-02-10 01:58:44] 2026-02-10 00:58:44,596 [wrapper] ==== wrapper stdout END ====
[2026-02-10 01:58:44] 2026-02-10 00:58:44,598 [wrapper] ==== wrapper stderr END ====
[2026-02-10 01:58:44]  *** Error codes and diagnostics ***
[2026-02-10 01:58:44]     "exeErrorCode": 0,
[2026-02-10 01:58:44]     "exeErrorDiag": "",
[2026-02-10 01:58:44]     "pilotErrorCode": 0,
[2026-02-10 01:58:44]     "pilotErrorDiag": "",
[2026-02-10 01:58:44]  *** Listing of results directory ***
[2026-02-10 01:58:44] total 950056
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc    584627 Feb  9 06:33 pilot3.tar.gz
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc      5111 Feb  9 06:34 queuedata.json
[2026-02-10 01:58:44] -rwx------ 1 boinc boinc     36322 Feb  9 06:34 runpilot2-wrapper.sh
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc       100 Feb  9 23:59 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-10 01:58:44] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 23:59 run_atlas
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc       105 Feb  9 23:59 job.xml
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc 682989788 Feb  9 23:59 EVNT.48431094._000709.pool.root.1
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc    597956 Feb  9 23:59 input.tar.gz
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc     15845 Feb  9 23:59 start_atlas.sh
[2026-02-10 01:58:44] drwxrwx--x 2 boinc boinc      4096 Feb  9 23:59 shared
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc         0 Feb  9 23:59 boinc_setup_complete
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc      6448 Feb  9 23:59 init_data.xml
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc         0 Feb  9 23:59 boinc_lockfile
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc      2555 Feb  9 23:59 pandaJob.out
[2026-02-10 01:58:44] -rw------- 1 boinc boinc   1009496 Feb 10 00:00 agis_schedconf.cvmfs.json
[2026-02-10 01:58:44] -rw------- 1 boinc boinc   1513144 Feb 10 00:00 agis_ddmendpoints.agis.ALL.json
[2026-02-10 01:58:44] -rw------- 1 boinc boinc       427 Feb 10 00:00 workernode_map.json
[2026-02-10 01:58:44] drwx------ 5 boinc boinc      4096 Feb 10 00:00 pilot3
[2026-02-10 01:58:44] -rw------- 1 boinc boinc 283333746 Feb 10 01:57 HITS.48431096._014748.pool.root.1
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc       530 Feb 10 01:57 boinc_task_state.xml
[2026-02-10 01:58:44] -rw------- 1 boinc boinc        95 Feb 10 01:58 pilot_heartbeat.json
[2026-02-10 01:58:44] -rw------- 1 boinc boinc      1017 Feb 10 01:58 memory_monitor_summary.json
[2026-02-10 01:58:44] -rw------- 1 boinc boinc    284361 Feb 10 01:58 log.48431096._014748.job.log.tgz.1
[2026-02-10 01:58:44] -rw------- 1 boinc boinc      6304 Feb 10 01:58 heartbeat.json
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc        27 Feb 10 01:58 wrapper_checkpoint.txt
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc      8192 Feb 10 01:58 boinc_mmap_file
[2026-02-10 01:58:44] -rw------- 1 boinc boinc      4820 Feb 10 01:58 pilotlog.txt
[2026-02-10 01:58:44] -rw------- 1 boinc boinc   1014999 Feb 10 01:58 log.48431096._014748.job.log.1
[2026-02-10 01:58:44] -rw------- 1 boinc boinc       357 Feb 10 01:58 output.list
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc       620 Feb 10 01:58 runtime_log
[2026-02-10 01:58:44] -rw------- 1 boinc boinc   1320960 Feb 10 01:58 result.tar.gz
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc      8916 Feb 10 01:58 runtime_log.err
[2026-02-10 01:58:44] -rw------- 1 boinc boinc       661 Feb 10 01:58 i8ELDmJ6Y98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmPJfKDmTLqYun.diag
[2026-02-10 01:58:44] -rw-r--r-- 1 boinc boinc     11714 Feb 10 01:58 stderr.txt
[2026-02-10 01:58:44] HITS file was successfully produced:
[2026-02-10 01:58:44] -rw------- 1 boinc boinc 283333746 Feb 10 01:57 shared/HITS.pool.root.1
[2026-02-10 01:58:44]  *** Contents of shared directory: ***
[2026-02-10 01:58:44] total 945580
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc 682989788 Feb  9 23:59 ATLAS.root_0
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc    597956 Feb  9 23:59 input.tar.gz
[2026-02-10 01:58:44] -rw-r--r-- 2 boinc boinc     15845 Feb  9 23:59 start_atlas.sh
[2026-02-10 01:58:44] -rw------- 1 boinc boinc 283333746 Feb 10 01:57 HITS.pool.root.1
[2026-02-10 01:58:44] -rw------- 1 boinc boinc   1320960 Feb 10 01:58 result.tar.gz
01:58:46 (3729140): run_atlas exited; CPU time 20428.533965
01:58:46 (3729140): called boinc_finish(0)

</stderr_txt>
]]>

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