Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
13:36:07 (28352): wrapper (7.7.26015): starting
13:36:07 (28352): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 13:36:07] Arguments: --nthreads 4
[2026-02-09 13:36:07] Threads: 4
[2026-02-09 13:36:07] Checking for CVMFS
[2026-02-09 13:36:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 13:36:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 13:36:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 13:36:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 13:36:08] 2.9.2.0 3034 77 51816 156054 2 188 22117813 36864000 0 130560 0 70568 99.995 1448 1476 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 13:36:08] CVMFS is ok
[2026-02-09 13:36:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 13:36:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 13:36:08] Further information can be found at the LHC@home message board.
[2026-02-09 13:36:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 13:36:08] Checking for apptainer binary...
[2026-02-09 13:36:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 13:36:08] Running /usr/bin/apptainer --version
[2026-02-09 13:36:08] apptainer version 1.4.1-1.1
[2026-02-09 13:36:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 13:36:08] thA305a
[2026-02-09 13:36:08] apptainer works
[2026-02-09 13:36:08] Set ATHENA_PROC_NUMBER=4
[2026-02-09 13:36:08] Set ATHENA_CORE_NUMBER=4
[2026-02-09 13:36:08] Starting ATLAS job with PandaID=7008496182
[2026-02-09 13:36:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 15:16:34]  *** The last 200 lines of the pilot log: ***
[2026-02-09 15:16:34] 2026-02-09 14:15:27,215 | INFO     | job 7008496182 has completed (purged errors)
[2026-02-09 15:16:34] 2026-02-09 14:15:27,215 | INFO     | overall cleanup function is called
[2026-02-09 15:16:34] 2026-02-09 14:15:28,222 | INFO     | --- collectZombieJob: --- 10, [36970]
[2026-02-09 15:16:34] 2026-02-09 14:15:28,223 | INFO     | zombie collector waiting for pid 36970
[2026-02-09 15:16:34] 2026-02-09 14:15:28,223 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 15:16:34] 2026-02-09 14:15:28,223 | INFO     | collected zombie processes
[2026-02-09 15:16:34] 2026-02-09 14:15:28,223 | INFO     | will attempt to kill all subprocesses of pid=36970
[2026-02-09 15:16:34] 2026-02-09 14:15:28,264 | INFO     | process IDs to be killed: [36970] (in reverse order)
[2026-02-09 15:16:34] 2026-02-09 14:15:28,297 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 15:16:34] 2026-02-09 14:15:28,297 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 15:16:34] 2026-02-09 14:15:28,299 | INFO     | did not find any defunct processes belonging to 36970
[2026-02-09 15:16:34] 2026-02-09 14:15:28,300 | INFO     | did not find any defunct processes belonging to 36970
[2026-02-09 15:16:34] 2026-02-09 14:15:28,300 | INFO     | ready for new job
[2026-02-09 15:16:34] 2026-02-09 14:15:28,300 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | **************************************
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | **************************************
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | 
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | architecture information:
[2026-02-09 15:16:34] 2026-02-09 14:15:28,301 | INFO     | executing command: cat /etc/os-release
[2026-02-09 15:16:34] 2026-02-09 14:15:28,315 | INFO     | cat /etc/os-release:
[2026-02-09 15:16:34] NAME="CentOS Linux"
[2026-02-09 15:16:34] VERSION="7 (Core)"
[2026-02-09 15:16:34] ID="centos"
[2026-02-09 15:16:34] ID_LIKE="rhel fedora"
[2026-02-09 15:16:34] VERSION_ID="7"
[2026-02-09 15:16:34] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 15:16:34] ANSI_COLOR="0;31"
[2026-02-09 15:16:34] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 15:16:34] HOME_URL="https://www.centos.org/"
[2026-02-09 15:16:34] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 15:16:34] 
[2026-02-09 15:16:34] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 15:16:34] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 15:16:34] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 15:16:34] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 15:16:34] 
[2026-02-09 15:16:34] 2026-02-09 14:15:28,315 | INFO     | **************************************
[2026-02-09 15:16:34] 2026-02-09 14:15:28,818 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 15:16:34] 2026-02-09 14:15:28,836 | INFO     | sufficient remaining disk space (333396836352 B)
[2026-02-09 15:16:34] 2026-02-09 14:15:28,836 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 15:16:34] 2026-02-09 14:15:28,836 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 15:16:34] 2026-02-09 14:15:28,836 | INFO     | update_server=False
[2026-02-09 15:16:34] 2026-02-09 14:15:28,836 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 15:16:34] 2026-02-09 14:15:28,837 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 15:16:34] 2026-02-09 14:15:28,837 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 15:16:34] 2026-02-09 14:15:28,882 | WARNING  | process 36970 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 15:16:34] 2026-02-09 14:15:28,884 | INFO     | all job control threads have been joined
[2026-02-09 15:16:34] 2026-02-09 14:15:28,913 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 15:16:34] 2026-02-09 14:15:28,951 | INFO     | number of running child processes to parent process 36970: 1
[2026-02-09 15:16:34] 2026-02-09 14:15:28,951 | INFO     | maximum number of monitored processes: 6
[2026-02-09 15:16:34] 2026-02-09 14:15:28,951 | INFO     | aborting job monitoring since job object (job id=7008496182) has expired
[2026-02-09 15:16:34] 2026-02-09 14:15:28,951 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 15:16:34] 2026-02-09 14:15:28,951 | INFO     | will abort loop
[2026-02-09 15:16:34] 2026-02-09 14:15:29,305 | INFO     | all data control threads have been joined
[2026-02-09 15:16:34] 2026-02-09 14:15:29,736 | INFO     | all payload control threads have been joined
[2026-02-09 15:16:34] 2026-02-09 14:15:29,842 | INFO     | [job] retrieve thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:29,842 | INFO     | [job] queue monitor thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:29,889 | INFO     | [job] control thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:29,913 | INFO     | [data] copytool_in thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:29,953 | INFO     | [job] job monitor thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:30,018 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 15:16:34] 2026-02-09 14:15:30,311 | INFO     | [data] control thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:30,570 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:30,741 | INFO     | [payload] control thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:30,804 | INFO     | [payload] validate_post thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:30,917 | INFO     | job.realtimelogging is not enabled
[2026-02-09 15:16:34] 2026-02-09 14:15:30,955 | INFO     | [payload] failed_post thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:31,076 | INFO     | [job] validate thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:31,154 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:31,294 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:31,923 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:32,025 | INFO     | [data] copytool_out thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:32,843 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 15:16:34] 2026-02-09 14:15:59,051 | INFO     | PID=32458 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 15:16:34] 2026-02-09 14:15:59,051 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 15:16:34] 2026-02-09 14:15:59,051 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 15:16:34] 2026-02-09 14:15:59,051 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 15:16:34] 2026-02-09 14:16:27,882 | INFO     | [monitor] cgroup control has ended
[2026-02-09 15:16:34] 2026-02-09 14:16:29,513 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140623335814976)>', '<ExcThread(monitor, started 140622262433536)>']
[2026-02-09 15:16:34] 2026-02-09 14:16:30,213 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 15:16:34] 2026-02-09 14:16:30,213 | INFO     | [monitor] control thread has ended
[2026-02-09 15:16:34] 2026-02-09 14:16:34,539 | INFO     | all workflow threads have been joined
[2026-02-09 15:16:34] 2026-02-09 14:16:34,539 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 15:16:34] 2026-02-09 14:16:34,539 | INFO     | traces error code: 0
[2026-02-09 15:16:34] 2026-02-09 14:16:34,539 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 15:16:34] 2026-02-09 14:16:34,616 [wrapper] ==== pilot stdout END ====
[2026-02-09 15:16:34] 2026-02-09 14:16:34,620 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 15:16:34] 2026-02-09 14:16:34,624 [wrapper] pilotpid: 32458
[2026-02-09 15:16:34] 2026-02-09 14:16:34,628 [wrapper] Pilot exit status: 0
[2026-02-09 15:16:34] 2026-02-09 14:16:34,639 [wrapper] pandaids: 7008496182
[2026-02-09 15:16:34] 2026-02-09 14:16:34,663 [wrapper] cleanup supervisor_pilot   42220 32459
[2026-02-09 15:16:34] 2026-02-09 14:16:34,667 [wrapper] Test setup, not cleaning
[2026-02-09 15:16:34] 2026-02-09 14:16:34,671 [wrapper] apfmon messages muted
[2026-02-09 15:16:34] 2026-02-09 14:16:34,674 [wrapper] ==== wrapper stdout END ====
[2026-02-09 15:16:34] 2026-02-09 14:16:34,678 [wrapper] ==== wrapper stderr END ====
[2026-02-09 15:16:34]  *** Error codes and diagnostics ***
[2026-02-09 15:16:34]     "exeErrorCode": 0,
[2026-02-09 15:16:34]     "exeErrorDiag": "",
[2026-02-09 15:16:34]     "pilotErrorCode": 0,
[2026-02-09 15:16:34]     "pilotErrorDiag": "",
[2026-02-09 15:16:34]  *** Listing of results directory ***
[2026-02-09 15:16:34] total 937464
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 15:16:34] -rwx------ 1 boinc boinc     36322 Feb  9 02:57 runpilot2-wrapper.sh
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc      5111 Feb  9 02:59 queuedata.json
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc       100 Feb  9 13:36 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 15:16:34] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 13:36 run_atlas
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc       105 Feb  9 13:36 job.xml
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc 678310629 Feb  9 13:36 EVNT.48431094._000609.pool.root.1
[2026-02-09 15:16:34] drwxrwx--x 2 boinc boinc      4096 Feb  9 13:36 shared
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc    597959 Feb  9 13:36 input.tar.gz
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc     15845 Feb  9 13:36 start_atlas.sh
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc         0 Feb  9 13:36 boinc_setup_complete
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc      6377 Feb  9 13:36 init_data.xml
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc         0 Feb  9 13:36 boinc_lockfile
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc      2556 Feb  9 13:36 pandaJob.out
[2026-02-09 15:16:34] -rw------- 1 boinc boinc   1009480 Feb  9 13:36 agis_schedconf.cvmfs.json
[2026-02-09 15:16:34] -rw------- 1 boinc boinc   1513144 Feb  9 13:36 agis_ddmendpoints.agis.ALL.json
[2026-02-09 15:16:34] -rw------- 1 boinc boinc       428 Feb  9 13:36 workernode_map.json
[2026-02-09 15:16:34] drwx------ 5 boinc boinc      4096 Feb  9 13:36 pilot3
[2026-02-09 15:16:34] -rw------- 1 boinc boinc 275380885 Feb  9 15:15 HITS.48431096._013656.pool.root.1
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc       530 Feb  9 15:15 boinc_task_state.xml
[2026-02-09 15:16:34] -rw------- 1 boinc boinc      1024 Feb  9 15:15 memory_monitor_summary.json
[2026-02-09 15:16:34] -rw------- 1 boinc boinc    315320 Feb  9 15:15 log.48431096._013656.job.log.tgz.1
[2026-02-09 15:16:34] -rw------- 1 boinc boinc      6317 Feb  9 15:15 heartbeat.json
[2026-02-09 15:16:34] -rw------- 1 boinc boinc        95 Feb  9 15:15 pilot_heartbeat.json
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc      8192 Feb  9 15:16 boinc_mmap_file
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc        27 Feb  9 15:16 wrapper_checkpoint.txt
[2026-02-09 15:16:34] -rw------- 1 boinc boinc      5338 Feb  9 15:16 pilotlog.txt
[2026-02-09 15:16:34] -rw------- 1 boinc boinc    859647 Feb  9 15:16 log.48431096._013656.job.log.1
[2026-02-09 15:16:34] -rw------- 1 boinc boinc       357 Feb  9 15:16 output.list
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc       620 Feb  9 15:16 runtime_log
[2026-02-09 15:16:34] -rw------- 1 boinc boinc   1187840 Feb  9 15:16 result.tar.gz
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc      8901 Feb  9 15:16 runtime_log.err
[2026-02-09 15:16:34] -rw------- 1 boinc boinc       658 Feb  9 15:16 p5SNDmFiV98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmseKDmbp0Lam.diag
[2026-02-09 15:16:34] -rw-r--r-- 1 boinc boinc     11505 Feb  9 15:16 stderr.txt
[2026-02-09 15:16:34] HITS file was successfully produced:
[2026-02-09 15:16:34] -rw------- 1 boinc boinc 275380885 Feb  9 15:15 shared/HITS.pool.root.1
[2026-02-09 15:16:34]  *** Contents of shared directory: ***
[2026-02-09 15:16:34] total 933112
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc 678310629 Feb  9 13:36 ATLAS.root_0
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc    597959 Feb  9 13:36 input.tar.gz
[2026-02-09 15:16:34] -rw-r--r-- 2 boinc boinc     15845 Feb  9 13:36 start_atlas.sh
[2026-02-09 15:16:34] -rw------- 1 boinc boinc 275380885 Feb  9 15:15 HITS.pool.root.1
[2026-02-09 15:16:34] -rw------- 1 boinc boinc   1187840 Feb  9 15:16 result.tar.gz
15:16:36 (28352): run_atlas exited; CPU time 22699.463805
15:16:36 (28352): called boinc_finish(0)

</stderr_txt>
]]>

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