Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
21:11:34 (4045701): wrapper (7.7.26015): starting
21:11:34 (4045701): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 21:11:34] Arguments: --nthreads 4
[2026-02-09 21:11:34] Threads: 4
[2026-02-09 21:11:34] Checking for CVMFS
[2026-02-09 21:11:34] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 21:11:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 21:11:35] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 21:11:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 21:11:35] 2.9.2.0 3088581 5021 92308 156063 0 50 36605223 36864001 0 130560 0 2745473 99.987 180361 14217 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 21:11:35] CVMFS is ok
[2026-02-09 21:11:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 21:11:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 21:11:35] Further information can be found at the LHC@home message board.
[2026-02-09 21:11:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 21:11:35] Checking for apptainer binary...
[2026-02-09 21:11:35] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 21:11:35] Running /usr/bin/apptainer --version
[2026-02-09 21:11:35] apptainer version 1.4.1-1.1
[2026-02-09 21:11:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 21:11:35] thA315b
[2026-02-09 21:11:35] apptainer works
[2026-02-09 21:11:35] Set ATHENA_PROC_NUMBER=4
[2026-02-09 21:11:35] Set ATHENA_CORE_NUMBER=4
[2026-02-09 21:11:35] Starting ATLAS job with PandaID=7006174440
[2026-02-09 21:11:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 22:12:57]  *** The last 200 lines of the pilot log: ***
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,560 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | job 7006174440 has completed (purged errors)
[2026-02-09 22:12:57] 2026-02-09 21:12:13,561 | INFO     | overall cleanup function is called
[2026-02-09 22:12:57] 2026-02-09 21:12:14,568 | INFO     | --- collectZombieJob: --- 10, [4054313]
[2026-02-09 22:12:57] 2026-02-09 21:12:14,568 | INFO     | zombie collector waiting for pid 4054313
[2026-02-09 22:12:57] 2026-02-09 21:12:14,568 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 22:12:57] 2026-02-09 21:12:14,568 | INFO     | collected zombie processes
[2026-02-09 22:12:57] 2026-02-09 21:12:14,568 | INFO     | will attempt to kill all subprocesses of pid=4054313
[2026-02-09 22:12:57] 2026-02-09 21:12:14,613 | INFO     | process IDs to be killed: [4054313] (in reverse order)
[2026-02-09 22:12:57] 2026-02-09 21:12:14,641 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 22:12:57] 2026-02-09 21:12:14,641 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 22:12:57] 2026-02-09 21:12:14,642 | INFO     | did not find any defunct processes belonging to 4054313
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | did not find any defunct processes belonging to 4054313
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | ready for new job
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | **************************************
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | **************************************
[2026-02-09 22:12:57] 2026-02-09 21:12:14,644 | INFO     | 
[2026-02-09 22:12:57] 2026-02-09 21:12:14,645 | INFO     | architecture information:
[2026-02-09 22:12:57] 2026-02-09 21:12:14,645 | INFO     | executing command: cat /etc/os-release
[2026-02-09 22:12:57] 2026-02-09 21:12:14,655 | INFO     | cat /etc/os-release:
[2026-02-09 22:12:57] NAME="CentOS Linux"
[2026-02-09 22:12:57] VERSION="7 (Core)"
[2026-02-09 22:12:57] ID="centos"
[2026-02-09 22:12:57] ID_LIKE="rhel fedora"
[2026-02-09 22:12:57] VERSION_ID="7"
[2026-02-09 22:12:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 22:12:57] ANSI_COLOR="0;31"
[2026-02-09 22:12:57] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 22:12:57] HOME_URL="https://www.centos.org/"
[2026-02-09 22:12:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 22:12:57] 
[2026-02-09 22:12:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 22:12:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 22:12:57] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 22:12:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 22:12:57] 
[2026-02-09 22:12:57] 2026-02-09 21:12:14,655 | INFO     | **************************************
[2026-02-09 22:12:57] 2026-02-09 21:12:15,158 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | INFO     | sufficient remaining disk space (318166269952 B)
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | INFO     | update_server=False
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 22:12:57] 2026-02-09 21:12:15,172 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | INFO     | aborting loop
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 22:12:57] 2026-02-09 21:12:15,173 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 22:12:57] 2026-02-09 21:12:15,856 | INFO     | all data control threads have been joined
[2026-02-09 22:12:57] 2026-02-09 21:12:16,050 | INFO     | all payload control threads have been joined
[2026-02-09 22:12:57] 2026-02-09 21:12:16,171 | INFO     | all job control threads have been joined
[2026-02-09 22:12:57] 2026-02-09 21:12:16,178 | INFO     | [job] retrieve thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:16,178 | INFO     | [job] job monitor thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:16,178 | INFO     | [job] queue monitor thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:16,497 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 22:12:57] 2026-02-09 21:12:16,499 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:16,726 | INFO     | [payload] validate_post thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:16,862 | INFO     | [data] control thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,056 | INFO     | [payload] control thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,149 | INFO     | [job] validate thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,177 | INFO     | [job] control thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,212 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,261 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,343 | INFO     | [payload] failed_post thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:17,397 | INFO     | [data] copytool_in thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:18,503 | INFO     | [data] copytool_out thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:19,179 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:26,109 | INFO     | job.realtimelogging is not enabled
[2026-02-09 22:12:57] 2026-02-09 21:12:27,115 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 22:12:57] 2026-02-09 21:12:50,529 | INFO     | [monitor] cgroup control has ended
[2026-02-09 22:12:57] 2026-02-09 21:12:52,182 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139880892897088)>', '<ExcThread(monitor, started 139880524912384)>']
[2026-02-09 22:12:57] 2026-02-09 21:12:52,369 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 22:12:57] 2026-02-09 21:12:52,369 | INFO     | [monitor] control thread has ended
[2026-02-09 22:12:57] 2026-02-09 21:12:57,208 | INFO     | all workflow threads have been joined
[2026-02-09 22:12:57] 2026-02-09 21:12:57,208 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 22:12:57] 2026-02-09 21:12:57,208 | INFO     | traces error code: 0
[2026-02-09 22:12:57] 2026-02-09 21:12:57,208 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 22:12:57] 2026-02-09 21:12:57,259 [wrapper] ==== pilot stdout END ====
[2026-02-09 22:12:57] 2026-02-09 21:12:57,262 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 22:12:57] 2026-02-09 21:12:57,265 [wrapper] pilotpid: 4049813
[2026-02-09 22:12:57] 2026-02-09 21:12:57,267 [wrapper] Pilot exit status: 0
[2026-02-09 22:12:57] 2026-02-09 21:12:57,275 [wrapper] pandaids: 7006174440
[2026-02-09 22:12:57] 2026-02-09 21:12:57,295 [wrapper] cleanup supervisor_pilot 4059174 4049814
[2026-02-09 22:12:57] 2026-02-09 21:12:57,298 [wrapper] Test setup, not cleaning
[2026-02-09 22:12:57] 2026-02-09 21:12:57,301 [wrapper] apfmon messages muted
[2026-02-09 22:12:57] 2026-02-09 21:12:57,303 [wrapper] ==== wrapper stdout END ====
[2026-02-09 22:12:57] 2026-02-09 21:12:57,306 [wrapper] ==== wrapper stderr END ====
[2026-02-09 22:12:57]  *** Error codes and diagnostics ***
[2026-02-09 22:12:57]     "exeErrorCode": 0,
[2026-02-09 22:12:57]     "exeErrorDiag": "",
[2026-02-09 22:12:57]     "pilotErrorCode": 0,
[2026-02-09 22:12:57]     "pilotErrorDiag": "",
[2026-02-09 22:12:57]  *** Listing of results directory ***
[2026-02-09 22:12:57] total 672580
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc      5111 Feb  9 04:56 queuedata.json
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc    584627 Feb  9 04:56 pilot3.tar.gz
[2026-02-09 22:12:57] -rwx------ 1 boinc boinc     36322 Feb  9 04:56 runpilot2-wrapper.sh
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc       100 Feb  9 21:11 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 22:12:57] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 21:11 run_atlas
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc       105 Feb  9 21:11 job.xml
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc 500969081 Feb  9 21:11 EVNT.48442096._000009.pool.root.1
[2026-02-09 22:12:57] drwxrwx--x 2 boinc boinc      4096 Feb  9 21:11 shared
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc    597958 Feb  9 21:11 input.tar.gz
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc     15845 Feb  9 21:11 start_atlas.sh
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc         0 Feb  9 21:11 boinc_setup_complete
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc      6443 Feb  9 21:11 init_data.xml
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc         0 Feb  9 21:11 boinc_lockfile
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc      2526 Feb  9 21:11 pandaJob.out
[2026-02-09 22:12:57] -rw------- 1 boinc boinc   1009496 Feb  9 21:11 agis_schedconf.cvmfs.json
[2026-02-09 22:12:57] -rw------- 1 boinc boinc   1513144 Feb  9 21:11 agis_ddmendpoints.agis.ALL.json
[2026-02-09 22:12:57] -rw------- 1 boinc boinc       424 Feb  9 21:11 workernode_map.json
[2026-02-09 22:12:57] drwx------ 5 boinc boinc      4096 Feb  9 21:11 pilot3
[2026-02-09 22:12:57] -rw------- 1 boinc boinc 182221445 Feb  9 22:11 HITS.48442098._004745.pool.root.1
[2026-02-09 22:12:57] -rw------- 1 boinc boinc        95 Feb  9 22:12 pilot_heartbeat.json
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc       530 Feb  9 22:12 boinc_task_state.xml
[2026-02-09 22:12:57] -rw------- 1 boinc boinc      1014 Feb  9 22:12 memory_monitor_summary.json
[2026-02-09 22:12:57] -rw------- 1 boinc boinc    251179 Feb  9 22:12 log.48442098._004745.job.log.tgz.1
[2026-02-09 22:12:57] -rw------- 1 boinc boinc      6284 Feb  9 22:12 heartbeat.json
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc      8192 Feb  9 22:12 boinc_mmap_file
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc        27 Feb  9 22:12 wrapper_checkpoint.txt
[2026-02-09 22:12:57] -rw------- 1 boinc boinc      4624 Feb  9 22:12 pilotlog.txt
[2026-02-09 22:12:57] -rw------- 1 boinc boinc    547045 Feb  9 22:12 log.48442098._004745.job.log.1
[2026-02-09 22:12:57] -rw------- 1 boinc boinc       357 Feb  9 22:12 output.list
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc       620 Feb  9 22:12 runtime_log
[2026-02-09 22:12:57] -rw------- 1 boinc boinc    819200 Feb  9 22:12 result.tar.gz
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc      8901 Feb  9 22:12 runtime_log.err
[2026-02-09 22:12:57] -rw------- 1 boinc boinc       658 Feb  9 22:12 0KBMDmzYX98n9Rq4apOajLDm4fhM0noT9bVooX4SDmkSeKDmw4ucgm.diag
[2026-02-09 22:12:57] -rw-r--r-- 1 boinc boinc     12657 Feb  9 22:12 stderr.txt
[2026-02-09 22:12:57] HITS file was successfully produced:
[2026-02-09 22:12:57] -rw------- 1 boinc boinc 182221445 Feb  9 22:11 shared/HITS.pool.root.1
[2026-02-09 22:12:57]  *** Contents of shared directory: ***
[2026-02-09 22:12:57] total 668588
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc 500969081 Feb  9 21:11 ATLAS.root_0
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc    597958 Feb  9 21:11 input.tar.gz
[2026-02-09 22:12:57] -rw-r--r-- 2 boinc boinc     15845 Feb  9 21:11 start_atlas.sh
[2026-02-09 22:12:57] -rw------- 1 boinc boinc 182221445 Feb  9 22:11 HITS.pool.root.1
[2026-02-09 22:12:57] -rw------- 1 boinc boinc    819200 Feb  9 22:12 result.tar.gz
22:12:59 (4045701): run_atlas exited; CPU time 13444.313019
22:12:59 (4045701): called boinc_finish(0)

</stderr_txt>
]]>

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