Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:29:06 (4017787): wrapper (7.7.26015): starting
18:29:06 (4017787): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 18:29:06] Arguments: --nthreads 4
[2026-02-09 18:29:06] Threads: 4
[2026-02-09 18:29:06] Checking for CVMFS
[2026-02-09 18:29:06] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 18:29:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 18:29:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 18:29:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 18:29:07] 2.9.2.0 3088581 4859 91040 156060 2 50 36588812 36864001 0 130560 0 2665552 99.987 175894 14151 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 18:29:07] CVMFS is ok
[2026-02-09 18:29:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 18:29:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 18:29:07] Further information can be found at the LHC@home message board.
[2026-02-09 18:29:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 18:29:07] Checking for apptainer binary...
[2026-02-09 18:29:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 18:29:07] Running /usr/bin/apptainer --version
[2026-02-09 18:29:07] apptainer version 1.4.1-1.1
[2026-02-09 18:29:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 18:29:07] thA315b
[2026-02-09 18:29:07] apptainer works
[2026-02-09 18:29:07] Set ATHENA_PROC_NUMBER=4
[2026-02-09 18:29:07] Set ATHENA_CORE_NUMBER=4
[2026-02-09 18:29:07] Starting ATLAS job with PandaID=7006160872
[2026-02-09 18:29:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 19:36:40]  *** The last 200 lines of the pilot log: ***
[2026-02-09 19:36:40] 2026-02-09 18:36:10,413 | INFO     | collected zombie processes
[2026-02-09 19:36:40] 2026-02-09 18:36:10,413 | INFO     | will attempt to kill all subprocesses of pid=4026402
[2026-02-09 19:36:40] 2026-02-09 18:36:10,458 | INFO     | process IDs to be killed: [4026402] (in reverse order)
[2026-02-09 19:36:40] 2026-02-09 18:36:10,485 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 19:36:40] 2026-02-09 18:36:10,486 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 19:36:40] 2026-02-09 18:36:10,487 | INFO     | did not find any defunct processes belonging to 4026402
[2026-02-09 19:36:40] 2026-02-09 18:36:10,488 | INFO     | did not find any defunct processes belonging to 4026402
[2026-02-09 19:36:40] 2026-02-09 18:36:10,488 | INFO     | ready for new job
[2026-02-09 19:36:40] 2026-02-09 18:36:10,488 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 19:36:40] 2026-02-09 18:36:10,489 | INFO     | **************************************
[2026-02-09 19:36:40] 2026-02-09 18:36:10,489 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 19:36:40] 2026-02-09 18:36:10,489 | INFO     | **************************************
[2026-02-09 19:36:40] 2026-02-09 18:36:10,489 | INFO     | 
[2026-02-09 19:36:40] 2026-02-09 18:36:10,489 | INFO     | architecture information:
[2026-02-09 19:36:40] 2026-02-09 18:36:10,490 | INFO     | executing command: cat /etc/os-release
[2026-02-09 19:36:40] 2026-02-09 18:36:10,499 | INFO     | cat /etc/os-release:
[2026-02-09 19:36:40] NAME="CentOS Linux"
[2026-02-09 19:36:40] VERSION="7 (Core)"
[2026-02-09 19:36:40] ID="centos"
[2026-02-09 19:36:40] ID_LIKE="rhel fedora"
[2026-02-09 19:36:40] VERSION_ID="7"
[2026-02-09 19:36:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 19:36:40] ANSI_COLOR="0;31"
[2026-02-09 19:36:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 19:36:40] HOME_URL="https://www.centos.org/"
[2026-02-09 19:36:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 19:36:40] 
[2026-02-09 19:36:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 19:36:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 19:36:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 19:36:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 19:36:40] 
[2026-02-09 19:36:40] 2026-02-09 18:36:10,499 | INFO     | **************************************
[2026-02-09 19:36:40] 2026-02-09 18:36:11,003 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 19:36:40] 2026-02-09 18:36:11,016 | INFO     | sufficient remaining disk space (318345576448 B)
[2026-02-09 19:36:40] 2026-02-09 18:36:11,016 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | INFO     | update_server=False
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | INFO     | aborting loop
[2026-02-09 19:36:40] 2026-02-09 18:36:11,017 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 19:36:40] 2026-02-09 18:36:11,316 | INFO     | all data control threads have been joined
[2026-02-09 19:36:40] 2026-02-09 18:36:12,022 | INFO     | [job] job monitor thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,023 | INFO     | [job] retrieve thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,023 | INFO     | [job] queue monitor thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,150 | INFO     | [payload] validate_post thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,157 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 19:36:40] 2026-02-09 18:36:12,237 | INFO     | all payload control threads have been joined
[2026-02-09 19:36:40] 2026-02-09 18:36:12,322 | INFO     | [data] control thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,426 | INFO     | all job control threads have been joined
[2026-02-09 19:36:40] 2026-02-09 18:36:12,508 | INFO     | [job] validate thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,610 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,692 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,710 | INFO     | [data] copytool_in thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:12,711 | INFO     | [payload] failed_post thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:13,243 | INFO     | [payload] control thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:13,326 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:13,431 | INFO     | [job] control thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:13,577 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 19:36:40] 2026-02-09 18:36:14,163 | INFO     | [data] copytool_out thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:17,584 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:21,441 | INFO     | job.realtimelogging is not enabled
[2026-02-09 19:36:40] 2026-02-09 18:36:21,912 | INFO     | [monitor] cgroup control has ended
[2026-02-09 19:36:40] 2026-02-09 18:36:22,447 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 19:36:40] 2026-02-09 18:36:24,265 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140151445944128)>', '<ExcThread(monitor, started 140150780700416)>']
[2026-02-09 19:36:40] 2026-02-09 18:36:29,291 | INFO     | all workflow threads have been joined
[2026-02-09 19:36:40] 2026-02-09 18:36:29,291 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 19:36:40] 2026-02-09 18:36:29,291 | INFO     | traces error code: 0
[2026-02-09 19:36:40] 2026-02-09 18:36:29,291 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | INFO     | PID=4021897 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 19:36:40] 2026-02-09 18:36:40,835 | INFO     | [monitor] control thread has ended
[2026-02-09 19:36:40] 2026-02-09 18:36:40,885 [wrapper] ==== pilot stdout END ====
[2026-02-09 19:36:40] 2026-02-09 18:36:40,888 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 19:36:40] 2026-02-09 18:36:40,890 [wrapper] pilotpid: 4021897
[2026-02-09 19:36:40] 2026-02-09 18:36:40,893 [wrapper] Pilot exit status: 0
[2026-02-09 19:36:40] 2026-02-09 18:36:40,901 [wrapper] pandaids: 7006160872
[2026-02-09 19:36:40] 2026-02-09 18:36:40,919 [wrapper] cleanup supervisor_pilot 4031311 4021898
[2026-02-09 19:36:40] 2026-02-09 18:36:40,921 [wrapper] Test setup, not cleaning
[2026-02-09 19:36:40] 2026-02-09 18:36:40,924 [wrapper] apfmon messages muted
[2026-02-09 19:36:40] 2026-02-09 18:36:40,927 [wrapper] ==== wrapper stdout END ====
[2026-02-09 19:36:40] 2026-02-09 18:36:40,929 [wrapper] ==== wrapper stderr END ====
[2026-02-09 19:36:40]  *** Error codes and diagnostics ***
[2026-02-09 19:36:40]     "exeErrorCode": 0,
[2026-02-09 19:36:40]     "exeErrorDiag": "",
[2026-02-09 19:36:40]     "pilotErrorCode": 0,
[2026-02-09 19:36:40]     "pilotErrorDiag": "",
[2026-02-09 19:36:40]  *** Listing of results directory ***
[2026-02-09 19:36:40] total 679800
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc    584627 Feb  9 02:56 pilot3.tar.gz
[2026-02-09 19:36:40] -rwx------ 1 boinc boinc     36322 Feb  9 02:58 runpilot2-wrapper.sh
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc      5111 Feb  9 02:59 queuedata.json
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc       100 Feb  9 18:29 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 19:36:40] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 18:29 run_atlas
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc       105 Feb  9 18:29 job.xml
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc 504576988 Feb  9 18:29 EVNT.48318040._000261.pool.root.1
[2026-02-09 19:36:40] drwxrwx--x 2 boinc boinc      4096 Feb  9 18:29 shared
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc    597962 Feb  9 18:29 input.tar.gz
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc     15845 Feb  9 18:29 start_atlas.sh
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc         0 Feb  9 18:29 boinc_setup_complete
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc      6443 Feb  9 18:29 init_data.xml
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc         0 Feb  9 18:29 boinc_lockfile
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc      2538 Feb  9 18:29 pandaJob.out
[2026-02-09 19:36:40] -rw------- 1 boinc boinc   1009496 Feb  9 18:29 agis_schedconf.cvmfs.json
[2026-02-09 19:36:40] -rw------- 1 boinc boinc   1513144 Feb  9 18:29 agis_ddmendpoints.agis.ALL.json
[2026-02-09 19:36:40] -rw------- 1 boinc boinc       424 Feb  9 18:29 workernode_map.json
[2026-02-09 19:36:40] drwx------ 5 boinc boinc      4096 Feb  9 18:29 pilot3
[2026-02-09 19:36:40] -rw------- 1 boinc boinc 185821300 Feb  9 19:35 HITS.48318042._013755.pool.root.1
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc       530 Feb  9 19:35 boinc_task_state.xml
[2026-02-09 19:36:40] -rw------- 1 boinc boinc      1021 Feb  9 19:36 memory_monitor_summary.json
[2026-02-09 19:36:40] -rw------- 1 boinc boinc    296902 Feb  9 19:36 log.48318042._013755.job.log.tgz.1
[2026-02-09 19:36:40] -rw------- 1 boinc boinc      6305 Feb  9 19:36 heartbeat.json
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc        27 Feb  9 19:36 wrapper_checkpoint.txt
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc      8192 Feb  9 19:36 boinc_mmap_file
[2026-02-09 19:36:40] -rw------- 1 boinc boinc       747 Feb  9 19:36 pilotlog.txt
[2026-02-09 19:36:40] -rw------- 1 boinc boinc        95 Feb  9 19:36 pilot_heartbeat.json
[2026-02-09 19:36:40] -rw------- 1 boinc boinc    598105 Feb  9 19:36 log.48318042._013755.job.log.1
[2026-02-09 19:36:40] -rw------- 1 boinc boinc       357 Feb  9 19:36 output.list
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc       620 Feb  9 19:36 runtime_log
[2026-02-09 19:36:40] -rw------- 1 boinc boinc    911360 Feb  9 19:36 result.tar.gz
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc      8901 Feb  9 19:36 runtime_log.err
[2026-02-09 19:36:40] -rw------- 1 boinc boinc       658 Feb  9 19:36 WzlNDmRiV98n9Rq4apOajLDm4fhM0noT9bVooX4SDmuKeKDmFzupxn.diag
[2026-02-09 19:36:40] -rw-r--r-- 1 boinc boinc     10374 Feb  9 19:36 stderr.txt
[2026-02-09 19:36:40] HITS file was successfully produced:
[2026-02-09 19:36:40] -rw------- 1 boinc boinc 185821300 Feb  9 19:35 shared/HITS.pool.root.1
[2026-02-09 19:36:40]  *** Contents of shared directory: ***
[2026-02-09 19:36:40] total 675720
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc 504576988 Feb  9 18:29 ATLAS.root_0
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc    597962 Feb  9 18:29 input.tar.gz
[2026-02-09 19:36:40] -rw-r--r-- 2 boinc boinc     15845 Feb  9 18:29 start_atlas.sh
[2026-02-09 19:36:40] -rw------- 1 boinc boinc 185821300 Feb  9 19:35 HITS.pool.root.1
[2026-02-09 19:36:40] -rw------- 1 boinc boinc    911360 Feb  9 19:36 result.tar.gz
19:36:42 (4017787): run_atlas exited; CPU time 15060.695608
19:36:42 (4017787): called boinc_finish(0)

</stderr_txt>
]]>

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