Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
14:23:35 (323222): wrapper (7.7.26015): starting
14:23:35 (323222): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 14:23:35] Arguments: --nthreads 4
[2026-02-09 14:23:35] Threads: 4
[2026-02-09 14:23:35] Checking for CVMFS
[2026-02-09 14:23:35] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 14:23:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 14:23:36] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 14:23:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 14:23:36] 2.9.2.0 3731233 4680 97704 156054 2 188 24894565 36864001 0 130560 0 2198745 99.985 166459 13382 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 14:23:36] CVMFS is ok
[2026-02-09 14:23:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 14:23:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 14:23:36] Further information can be found at the LHC@home message board.
[2026-02-09 14:23:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 14:23:36] Checking for apptainer binary...
[2026-02-09 14:23:36] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 14:23:36] Running /usr/bin/apptainer --version
[2026-02-09 14:23:36] apptainer version 1.4.1-1.1
[2026-02-09 14:23:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 14:23:36] thA332a
[2026-02-09 14:23:36] apptainer works
[2026-02-09 14:23:36] Set ATHENA_PROC_NUMBER=4
[2026-02-09 14:23:36] Set ATHENA_CORE_NUMBER=4
[2026-02-09 14:23:36] Starting ATLAS job with PandaID=7005774819
[2026-02-09 14:23:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 14:33:17]  *** The last 200 lines of the pilot log: ***
[2026-02-09 14:33:17] 2026-02-09 13:32:44,944 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 14:33:17] 2026-02-09 13:32:44,944 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 14:33:17] 2026-02-09 13:32:44,945 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 14:33:17] 2026-02-09 13:32:44,945 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 14:33:17] 2026-02-09 13:32:44,945 | INFO     | job 7005774819 has completed (purged errors)
[2026-02-09 14:33:17] 2026-02-09 13:32:44,945 | INFO     | overall cleanup function is called
[2026-02-09 14:33:17] 2026-02-09 13:32:45,951 | INFO     | --- collectZombieJob: --- 10, [331841]
[2026-02-09 14:33:17] 2026-02-09 13:32:45,952 | INFO     | zombie collector waiting for pid 331841
[2026-02-09 14:33:17] 2026-02-09 13:32:45,952 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 14:33:17] 2026-02-09 13:32:45,952 | INFO     | collected zombie processes
[2026-02-09 14:33:17] 2026-02-09 13:32:45,953 | INFO     | will attempt to kill all subprocesses of pid=331841
[2026-02-09 14:33:17] 2026-02-09 13:32:45,997 | INFO     | process IDs to be killed: [331841] (in reverse order)
[2026-02-09 14:33:17] 2026-02-09 13:32:46,032 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 14:33:17] 2026-02-09 13:32:46,032 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 14:33:17] 2026-02-09 13:32:46,034 | INFO     | did not find any defunct processes belonging to 331841
[2026-02-09 14:33:17] 2026-02-09 13:32:46,035 | INFO     | did not find any defunct processes belonging to 331841
[2026-02-09 14:33:17] 2026-02-09 13:32:46,035 | INFO     | ready for new job
[2026-02-09 14:33:17] 2026-02-09 13:32:46,035 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 14:33:17] 2026-02-09 13:32:46,036 | INFO     | **************************************
[2026-02-09 14:33:17] 2026-02-09 13:32:46,036 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 14:33:17] 2026-02-09 13:32:46,036 | INFO     | **************************************
[2026-02-09 14:33:17] 2026-02-09 13:32:46,036 | INFO     | 
[2026-02-09 14:33:17] 2026-02-09 13:32:46,036 | INFO     | architecture information:
[2026-02-09 14:33:17] 2026-02-09 13:32:46,037 | INFO     | executing command: cat /etc/os-release
[2026-02-09 14:33:17] 2026-02-09 13:32:46,051 | INFO     | cat /etc/os-release:
[2026-02-09 14:33:17] NAME="CentOS Linux"
[2026-02-09 14:33:17] VERSION="7 (Core)"
[2026-02-09 14:33:17] ID="centos"
[2026-02-09 14:33:17] ID_LIKE="rhel fedora"
[2026-02-09 14:33:17] VERSION_ID="7"
[2026-02-09 14:33:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 14:33:17] ANSI_COLOR="0;31"
[2026-02-09 14:33:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 14:33:17] HOME_URL="https://www.centos.org/"
[2026-02-09 14:33:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 14:33:17] 
[2026-02-09 14:33:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 14:33:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 14:33:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 14:33:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 14:33:17] 
[2026-02-09 14:33:17] 2026-02-09 13:32:46,051 | INFO     | **************************************
[2026-02-09 14:33:17] 2026-02-09 13:32:46,554 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | INFO     | sufficient remaining disk space (330598187008 B)
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | INFO     | update_server=False
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 14:33:17] 2026-02-09 13:32:46,573 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 14:33:17] 2026-02-09 13:32:46,574 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 14:33:17] 2026-02-09 13:32:46,574 | INFO     | aborting loop
[2026-02-09 14:33:17] 2026-02-09 13:32:46,619 | INFO     | all payload control threads have been joined
[2026-02-09 14:33:17] 2026-02-09 13:32:46,774 | INFO     | all job control threads have been joined
[2026-02-09 14:33:17] 2026-02-09 13:32:46,822 | INFO     | all data control threads have been joined
[2026-02-09 14:33:17] 2026-02-09 13:32:47,579 | INFO     | [job] retrieve thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:47,579 | INFO     | [job] queue monitor thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:47,579 | INFO     | [job] job monitor thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:47,625 | INFO     | [payload] control thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:47,780 | INFO     | [job] control thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:47,828 | INFO     | [data] control thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,065 | INFO     | [job] validate thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,164 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,178 | INFO     | [payload] validate_post thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,253 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,328 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,341 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 14:33:17] 2026-02-09 13:32:48,377 | INFO     | [data] copytool_in thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,580 | INFO     | [data] copytool_out thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,668 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,706 | INFO     | [payload] failed_post thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:48,880 | INFO     | [monitor] cgroup control has ended
[2026-02-09 14:33:17] 2026-02-09 13:32:52,348 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 14:33:17] 2026-02-09 13:32:53,799 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314937317184)>', '<ExcThread(monitor, started 140314056566528)>']
[2026-02-09 14:33:17] 2026-02-09 13:32:58,825 | INFO     | all workflow threads have been joined
[2026-02-09 14:33:17] 2026-02-09 13:32:58,825 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 14:33:17] 2026-02-09 13:32:58,825 | INFO     | traces error code: 0
[2026-02-09 14:33:17] 2026-02-09 13:32:58,826 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 14:33:17] 2026-02-09 13:33:17,395 | INFO     | PID=327332 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 14:33:17] 2026-02-09 13:33:17,396 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 14:33:17] 2026-02-09 13:33:17,396 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 14:33:17] 2026-02-09 13:33:17,396 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 14:33:17] 2026-02-09 13:33:17,396 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 14:33:17] 2026-02-09 13:33:17,396 | INFO     | [monitor] control thread has ended
[2026-02-09 14:33:17] 2026-02-09 13:33:17,469 [wrapper] ==== pilot stdout END ====
[2026-02-09 14:33:17] 2026-02-09 13:33:17,473 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 14:33:17] 2026-02-09 13:33:17,478 [wrapper] pilotpid: 327332
[2026-02-09 14:33:17] 2026-02-09 13:33:17,482 [wrapper] Pilot exit status: 0
[2026-02-09 14:33:17] 2026-02-09 13:33:17,494 [wrapper] pandaids: 7005774819
[2026-02-09 14:33:17] 2026-02-09 13:33:17,516 [wrapper] cleanup supervisor_pilot  327338 327333
[2026-02-09 14:33:17] 2026-02-09 13:33:17,520 [wrapper] Test setup, not cleaning
[2026-02-09 14:33:17] 2026-02-09 13:33:17,524 [wrapper] apfmon messages muted
[2026-02-09 14:33:17] 2026-02-09 13:33:17,528 [wrapper] ==== wrapper stdout END ====
[2026-02-09 14:33:17] 2026-02-09 13:33:17,531 [wrapper] ==== wrapper stderr END ====
[2026-02-09 14:33:17]  *** Error codes and diagnostics ***
[2026-02-09 14:33:17]     "exeErrorCode": 65,
[2026-02-09 14:33:17]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 5211.35 KB/s",
[2026-02-09 14:33:17]     "pilotErrorCode": 1305,
[2026-02-09 14:33:17]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-02-09 14:33:17]  *** Listing of results directory ***
[2026-02-09 14:33:17] total 488260
[2026-02-09 14:33:17] -rwx------ 1 boinc boinc     36322 Feb  8 20:53 runpilot2-wrapper.sh
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc      5111 Feb  8 20:55 queuedata.json
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc    584627 Feb  8 20:57 pilot3.tar.gz
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc       100 Feb  9 14:23 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 14:33:17] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 14:23 run_atlas
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc       105 Feb  9 14:23 job.xml
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc 495488047 Feb  9 14:23 EVNT.48318008._000256.pool.root.1
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc    597950 Feb  9 14:23 input.tar.gz
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc     15845 Feb  9 14:23 start_atlas.sh
[2026-02-09 14:33:17] drwxrwx--x 2 boinc boinc      4096 Feb  9 14:23 shared
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc         0 Feb  9 14:23 boinc_setup_complete
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc      6370 Feb  9 14:23 init_data.xml
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc         0 Feb  9 14:23 boinc_lockfile
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc      2528 Feb  9 14:23 pandaJob.out
[2026-02-09 14:33:17] -rw------- 1 boinc boinc   1009480 Feb  9 14:23 agis_schedconf.cvmfs.json
[2026-02-09 14:33:17] -rw------- 1 boinc boinc   1513144 Feb  9 14:23 agis_ddmendpoints.agis.ALL.json
[2026-02-09 14:33:17] -rw------- 1 boinc boinc       428 Feb  9 14:23 workernode_map.json
[2026-02-09 14:33:17] drwx------ 5 boinc boinc      4096 Feb  9 14:23 pilot3
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc       527 Feb  9 14:30 boinc_task_state.xml
[2026-02-09 14:33:17] -rw------- 1 boinc boinc      1016 Feb  9 14:30 memory_monitor_summary.json
[2026-02-09 14:33:17] -rw------- 1 boinc boinc    154780 Feb  9 14:30 log.48318010._014241.job.log.tgz.1
[2026-02-09 14:33:17] -rw------- 1 boinc boinc      8104 Feb  9 14:32 heartbeat.json
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc      8192 Feb  9 14:32 boinc_mmap_file
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc        24 Feb  9 14:32 wrapper_checkpoint.txt
[2026-02-09 14:33:17] -rw------- 1 boinc boinc       746 Feb  9 14:33 pilotlog.txt
[2026-02-09 14:33:17] -rw------- 1 boinc boinc        95 Feb  9 14:33 pilot_heartbeat.json
[2026-02-09 14:33:17] -rw------- 1 boinc boinc    130648 Feb  9 14:33 log.48318010._014241.job.log.1
[2026-02-09 14:33:17] -rw------- 1 boinc boinc       188 Feb  9 14:33 output.list
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc       620 Feb  9 14:33 runtime_log
[2026-02-09 14:33:17] -rw------- 1 boinc boinc    307200 Feb  9 14:33 result.tar.gz
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc      8748 Feb  9 14:33 runtime_log.err
[2026-02-09 14:33:17] -rw------- 1 boinc boinc       651 Feb  9 14:33 347MDmp1P98n9Rq4apOajLDm4fhM0noT9bVooX4SDmJqdKDmCO9IIm.diag
[2026-02-09 14:33:17] -rw-r--r-- 1 boinc boinc     11695 Feb  9 14:33 stderr.txt
[2026-02-09 14:33:17] No HITS result produced
[2026-02-09 14:33:17]  *** Contents of shared directory: ***
[2026-02-09 14:33:17] total 484780
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc 495488047 Feb  9 14:23 ATLAS.root_0
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc    597950 Feb  9 14:23 input.tar.gz
[2026-02-09 14:33:17] -rw-r--r-- 2 boinc boinc     15845 Feb  9 14:23 start_atlas.sh
[2026-02-09 14:33:17] -rw------- 1 boinc boinc    307200 Feb  9 14:33 result.tar.gz
14:33:19 (323222): run_atlas exited; CPU time 155.747894
14:33:19 (323222): called boinc_finish(0)

</stderr_txt>
]]>

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