Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:54:33 (312071): wrapper (7.7.26015): starting
11:54:33 (312071): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 11:54:33] Arguments: --nthreads 4
[2026-02-09 11:54:33] Threads: 4
[2026-02-09 11:54:33] Checking for CVMFS
[2026-02-09 11:54:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 11:54:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 11:54:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 11:54:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 11:54:34] 2.9.2.0 3049 1655 86156 156052 0 50 22091481 36864001 0 130560 0 876129 99.988 56009 16410 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 11:54:34] CVMFS is ok
[2026-02-09 11:54:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 11:54:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 11:54:34] Further information can be found at the LHC@home message board.
[2026-02-09 11:54:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 11:54:34] Checking for apptainer binary...
[2026-02-09 11:54:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 11:54:34] Running /usr/bin/apptainer --version
[2026-02-09 11:54:34] apptainer version 1.4.1-1.1
[2026-02-09 11:54:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 11:54:34] thA305a
[2026-02-09 11:54:34] apptainer works
[2026-02-09 11:54:34] Set ATHENA_PROC_NUMBER=4
[2026-02-09 11:54:34] Set ATHENA_CORE_NUMBER=4
[2026-02-09 11:54:34] Starting ATLAS job with PandaID=7008210590
[2026-02-09 11:54:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 11:58:51]  *** The last 200 lines of the pilot log: ***
[2026-02-09 11:58:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 11:58:51] 
[2026-02-09 11:58:51] 2026-02-09 10:57:49,627 | INFO     | **************************************
[2026-02-09 11:58:51] 2026-02-09 10:57:50,131 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 11:58:51] 2026-02-09 10:57:50,148 | INFO     | sufficient remaining disk space (333383204864 B)
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | INFO     | update_server=False
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:58:51] 2026-02-09 10:57:50,149 | INFO     | aborting loop
[2026-02-09 11:58:51] 2026-02-09 10:57:50,299 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 11:58:51] 2026-02-09 10:57:50,956 | INFO     | all payload control threads have been joined
[2026-02-09 11:58:51] 2026-02-09 10:57:51,154 | INFO     | [job] queue monitor thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:51,155 | INFO     | [job] retrieve thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:51,155 | INFO     | [job] job monitor thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:51,205 | INFO     | all data control threads have been joined
[2026-02-09 11:58:51] 2026-02-09 10:57:51,248 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:51,776 | INFO     | all job control threads have been joined
[2026-02-09 11:58:51] 2026-02-09 10:57:51,897 | INFO     | [job] validate thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:51,962 | INFO     | [payload] control thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,008 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,085 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,107 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,206 | INFO     | [data] copytool_in thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,210 | INFO     | [data] control thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,280 | INFO     | [payload] failed_post thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,305 | INFO     | [data] copytool_out thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,424 | INFO     | [payload] validate_post thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:52,781 | INFO     | [job] control thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:57:54,156 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 11:58:51] 2026-02-09 10:58:20,481 | INFO     | PID=316183 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 11:58:51] 2026-02-09 10:58:20,481 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 11:58:51] 2026-02-09 10:58:20,481 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 11:58:51] 2026-02-09 10:58:20,481 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 11:58:51] 2026-02-09 10:58:45,673 | INFO     | [monitor] cgroup control has ended
[2026-02-09 11:58:51] 2026-02-09 10:58:45,866 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139985185572672)>', '<ExcThread(monitor, started 139984820479744)>']
[2026-02-09 11:58:51] 2026-02-09 10:58:46,620 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 11:58:51] 2026-02-09 10:58:46,620 | INFO     | [monitor] control thread has ended
[2026-02-09 11:58:51] 2026-02-09 10:58:50,877 | INFO     | all workflow threads have been joined
[2026-02-09 11:58:51] 2026-02-09 10:58:50,877 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 11:58:51] 2026-02-09 10:58:50,877 | INFO     | traces error code: 0
[2026-02-09 11:58:51] 2026-02-09 10:58:50,877 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 11:58:51] 2026-02-09 10:58:50,951 [wrapper] ==== pilot stdout END ====
[2026-02-09 11:58:51] 2026-02-09 10:58:50,955 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 11:58:51] 2026-02-09 10:58:50,959 [wrapper] pilotpid: 316183
[2026-02-09 11:58:51] 2026-02-09 10:58:50,963 [wrapper] Pilot exit status: 0
[2026-02-09 11:58:51] 2026-02-09 10:58:50,974 [wrapper] pandaids: 7008210590
[2026-02-09 11:58:51] 2026-02-09 10:58:50,995 [wrapper] cleanup supervisor_pilot  316189 316184
[2026-02-09 11:58:51] 2026-02-09 10:58:50,998 [wrapper] Test setup, not cleaning
[2026-02-09 11:58:51] 2026-02-09 10:58:51,002 [wrapper] apfmon messages muted
[2026-02-09 11:58:51] 2026-02-09 10:58:51,005 [wrapper] ==== wrapper stdout END ====
[2026-02-09 11:58:51] 2026-02-09 10:58:51,009 [wrapper] ==== wrapper stderr END ====
[2026-02-09 11:58:51]  *** Error codes and diagnostics ***
[2026-02-09 11:58:51]     "exeErrorCode": 0,
[2026-02-09 11:58:51]     "exeErrorDiag": "",
[2026-02-09 11:58:51]     "pilotErrorCode": 1305,
[2026-02-09 11:58:51]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGSEGV signal (exit code 139)",
[2026-02-09 11:58:51]  *** Listing of results directory ***
[2026-02-09 11:58:51] total 666592
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc    584627 Feb  8 20:50 pilot3.tar.gz
[2026-02-09 11:58:51] -rwx------ 1 boinc boinc     36322 Feb  8 20:52 runpilot2-wrapper.sh
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      5111 Feb  8 20:55 queuedata.json
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc       100 Feb  9 11:54 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 11:58:51] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 11:54 run_atlas
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc       105 Feb  9 11:54 job.xml
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc 678429209 Feb  9 11:54 EVNT.48431094._000550.pool.root.1
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc    597957 Feb  9 11:54 input.tar.gz
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:54 start_atlas.sh
[2026-02-09 11:58:51] drwxrwx--x 2 boinc boinc      4096 Feb  9 11:54 shared
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:54 boinc_setup_complete
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      6377 Feb  9 11:54 init_data.xml
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:54 boinc_lockfile
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      2555 Feb  9 11:54 pandaJob.out
[2026-02-09 11:58:51] -rw------- 1 boinc boinc   1009488 Feb  9 11:54 agis_schedconf.cvmfs.json
[2026-02-09 11:58:51] -rw------- 1 boinc boinc   1513144 Feb  9 11:54 agis_ddmendpoints.agis.ALL.json
[2026-02-09 11:58:51] -rw------- 1 boinc boinc       419 Feb  9 11:54 workernode_map.json
[2026-02-09 11:58:51] drwx------ 5 boinc boinc      4096 Feb  9 11:54 pilot3
[2026-02-09 11:58:51] -rw------- 1 boinc boinc       958 Feb  9 11:55 memory_monitor_summary.json
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc       523 Feb  9 11:55 boinc_task_state.xml
[2026-02-09 11:58:51] -rw------- 1 boinc boinc     33690 Feb  9 11:55 log.48431096._011231.job.log.tgz.1
[2026-02-09 11:58:51] -rw------- 1 boinc boinc        95 Feb  9 11:57 pilot_heartbeat.json
[2026-02-09 11:58:51] -rw------- 1 boinc boinc      6956 Feb  9 11:57 heartbeat.json
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc        23 Feb  9 11:58 wrapper_checkpoint.txt
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      8192 Feb  9 11:58 boinc_mmap_file
[2026-02-09 11:58:51] -rw------- 1 boinc boinc      4747 Feb  9 11:58 pilotlog.txt
[2026-02-09 11:58:51] -rw------- 1 boinc boinc     84636 Feb  9 11:58 log.48431096._011231.job.log.1
[2026-02-09 11:58:51] -rw------- 1 boinc boinc       188 Feb  9 11:58 output.list
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc       620 Feb  9 11:58 runtime_log
[2026-02-09 11:58:51] -rw------- 1 boinc boinc    133120 Feb  9 11:58 result.tar.gz
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      8748 Feb  9 11:58 runtime_log.err
[2026-02-09 11:58:51] -rw------- 1 boinc boinc       648 Feb  9 11:58 AaDLDme0P98n9Rq4apOajLDm4fhM0noT9bVooX4SDmtmdKDmY4Okyn.diag
[2026-02-09 11:58:51] -rw-r--r-- 1 boinc boinc      8210 Feb  9 11:58 stderr.txt
[2026-02-09 11:58:51] No HITS result produced
[2026-02-09 11:58:51]  *** Contents of shared directory: ***
[2026-02-09 11:58:51] total 663268
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc 678429209 Feb  9 11:54 ATLAS.root_0
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc    597957 Feb  9 11:54 input.tar.gz
[2026-02-09 11:58:51] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:54 start_atlas.sh
[2026-02-09 11:58:51] -rw------- 1 boinc boinc    133120 Feb  9 11:58 result.tar.gz
11:58:52 (312071): run_atlas exited; CPU time 32.074977
11:58:52 (312071): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN