Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:24:37 (3631642): wrapper (7.7.26015): starting
12:24:37 (3631642): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 12:24:37] Arguments: --nthreads 3
[2026-02-09 12:24:37] Threads: 3
[2026-02-09 12:24:37] Checking for CVMFS
[2026-02-09 12:24:37] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 12:24:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 12:24:38] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 12:24:38] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 12:24:38] 2.9.2.0 2962440 4489 79568 156054 3 49 27218165 36864001 0 130560 0 1925446 99.984 165898 9459 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 12:24:38] CVMFS is ok
[2026-02-09 12:24:38] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 12:24:38] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 12:24:38] Further information can be found at the LHC@home message board.
[2026-02-09 12:24:38] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 12:24:38] Checking for apptainer binary...
[2026-02-09 12:24:38] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 12:24:38] Running /usr/bin/apptainer --version
[2026-02-09 12:24:38] apptainer version 1.4.1-1.1
[2026-02-09 12:24:38] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 12:24:38] magicA161a
[2026-02-09 12:24:38] apptainer works
[2026-02-09 12:24:38] Set ATHENA_PROC_NUMBER=3
[2026-02-09 12:24:38] Set ATHENA_CORE_NUMBER=3
[2026-02-09 12:24:38] Starting ATLAS job with PandaID=7008213890
[2026-02-09 12:24:38] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 14:23:01]  *** The last 200 lines of the pilot log: ***
[2026-02-09 14:23:01] 2026-02-09 13:22:23,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 14:23:01] 2026-02-09 13:22:23,175 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 14:23:01] 2026-02-09 13:22:23,176 | INFO     | job 7008213890 has completed (purged errors)
[2026-02-09 14:23:01] 2026-02-09 13:22:23,176 | INFO     | overall cleanup function is called
[2026-02-09 14:23:01] 2026-02-09 13:22:24,180 | INFO     | --- collectZombieJob: --- 10, [3640111]
[2026-02-09 14:23:01] 2026-02-09 13:22:24,180 | INFO     | zombie collector waiting for pid 3640111
[2026-02-09 14:23:01] 2026-02-09 13:22:24,180 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 14:23:01] 2026-02-09 13:22:24,180 | INFO     | collected zombie processes
[2026-02-09 14:23:01] 2026-02-09 13:22:24,180 | INFO     | will attempt to kill all subprocesses of pid=3640111
[2026-02-09 14:23:01] 2026-02-09 13:22:24,222 | INFO     | process IDs to be killed: [3640111] (in reverse order)
[2026-02-09 14:23:01] 2026-02-09 13:22:24,245 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 14:23:01] 2026-02-09 13:22:24,245 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 14:23:01] 2026-02-09 13:22:24,246 | INFO     | did not find any defunct processes belonging to 3640111
[2026-02-09 14:23:01] 2026-02-09 13:22:24,247 | INFO     | did not find any defunct processes belonging to 3640111
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | ready for new job
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | **************************************
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | **************************************
[2026-02-09 14:23:01] 2026-02-09 13:22:24,248 | INFO     | 
[2026-02-09 14:23:01] 2026-02-09 13:22:24,249 | INFO     | architecture information:
[2026-02-09 14:23:01] 2026-02-09 13:22:24,249 | INFO     | executing command: cat /etc/os-release
[2026-02-09 14:23:01] 2026-02-09 13:22:24,257 | INFO     | cat /etc/os-release:
[2026-02-09 14:23:01] NAME="CentOS Linux"
[2026-02-09 14:23:01] VERSION="7 (Core)"
[2026-02-09 14:23:01] ID="centos"
[2026-02-09 14:23:01] ID_LIKE="rhel fedora"
[2026-02-09 14:23:01] VERSION_ID="7"
[2026-02-09 14:23:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 14:23:01] ANSI_COLOR="0;31"
[2026-02-09 14:23:01] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 14:23:01] HOME_URL="https://www.centos.org/"
[2026-02-09 14:23:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 14:23:01] 
[2026-02-09 14:23:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 14:23:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 14:23:01] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 14:23:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 14:23:01] 
[2026-02-09 14:23:01] 2026-02-09 13:22:24,257 | INFO     | **************************************
[2026-02-09 14:23:01] 2026-02-09 13:22:24,761 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 14:23:01] 2026-02-09 13:22:24,772 | INFO     | sufficient remaining disk space (373508014080 B)
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | INFO     | update_server=False
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 14:23:01] 2026-02-09 13:22:24,773 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 14:23:01] 2026-02-09 13:22:25,041 | INFO     | all data control threads have been joined
[2026-02-09 14:23:01] 2026-02-09 13:22:25,271 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 14:23:01] 2026-02-09 13:22:25,272 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 14:23:01] 2026-02-09 13:22:25,272 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 14:23:01] 2026-02-09 13:22:25,272 | INFO     | will abort loop
[2026-02-09 14:23:01] 2026-02-09 13:22:25,442 | INFO     | all payload control threads have been joined
[2026-02-09 14:23:01] 2026-02-09 13:22:25,775 | INFO     | [job] queue monitor thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:25,778 | INFO     | [job] retrieve thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:25,980 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,001 | INFO     | all job control threads have been joined
[2026-02-09 14:23:01] 2026-02-09 13:22:26,047 | INFO     | [data] control thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,277 | INFO     | [job] job monitor thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,439 | INFO     | [job] validate thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,447 | INFO     | [payload] control thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,511 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,534 | INFO     | [payload] validate_post thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,565 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,610 | INFO     | [payload] failed_post thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,694 | INFO     | [data] copytool_in thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:26,779 | INFO     | [data] copytool_out thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:27,007 | INFO     | [job] control thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:27,339 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 14:23:01] 2026-02-09 13:22:31,346 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:35,755 | INFO     | job.realtimelogging is not enabled
[2026-02-09 14:23:01] 2026-02-09 13:22:36,760 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 14:23:01] 2026-02-09 13:22:55,198 | INFO     | PID=3635689 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 14:23:01] 2026-02-09 13:22:55,199 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 14:23:01] 2026-02-09 13:22:55,199 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 14:23:01] 2026-02-09 13:22:55,199 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 14:23:01] 2026-02-09 13:22:55,275 | INFO     | [monitor] cgroup control has ended
[2026-02-09 14:23:01] 2026-02-09 13:22:56,120 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140545716045632)>', '<ExcThread(monitor, started 140544927844096)>']
[2026-02-09 14:23:01] 2026-02-09 13:22:56,204 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 14:23:01] 2026-02-09 13:22:56,204 | INFO     | [monitor] control thread has ended
[2026-02-09 14:23:01] 2026-02-09 13:23:01,146 | INFO     | all workflow threads have been joined
[2026-02-09 14:23:01] 2026-02-09 13:23:01,146 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 14:23:01] 2026-02-09 13:23:01,146 | INFO     | traces error code: 0
[2026-02-09 14:23:01] 2026-02-09 13:23:01,146 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 14:23:01] 2026-02-09 13:23:01,193 [wrapper] ==== pilot stdout END ====
[2026-02-09 14:23:01] 2026-02-09 13:23:01,196 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 14:23:01] 2026-02-09 13:23:01,198 [wrapper] pilotpid: 3635689
[2026-02-09 14:23:01] 2026-02-09 13:23:01,200 [wrapper] Pilot exit status: 0
[2026-02-09 14:23:01] 2026-02-09 13:23:01,208 [wrapper] pandaids: 7008213890
[2026-02-09 14:23:01] 2026-02-09 13:23:01,223 [wrapper] cleanup supervisor_pilot 3645456 3635690
[2026-02-09 14:23:01] 2026-02-09 13:23:01,225 [wrapper] Test setup, not cleaning
[2026-02-09 14:23:01] 2026-02-09 13:23:01,228 [wrapper] apfmon messages muted
[2026-02-09 14:23:01] 2026-02-09 13:23:01,230 [wrapper] ==== wrapper stdout END ====
[2026-02-09 14:23:01] 2026-02-09 13:23:01,232 [wrapper] ==== wrapper stderr END ====
[2026-02-09 14:23:01]  *** Error codes and diagnostics ***
[2026-02-09 14:23:01]     "exeErrorCode": 0,
[2026-02-09 14:23:01]     "exeErrorDiag": "",
[2026-02-09 14:23:01]     "pilotErrorCode": 0,
[2026-02-09 14:23:01]     "pilotErrorDiag": "",
[2026-02-09 14:23:01]  *** Listing of results directory ***
[2026-02-09 14:23:01] total 955252
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc    584627 Feb  8 20:50 pilot3.tar.gz
[2026-02-09 14:23:01] -rwx------ 1 boinc boinc     36322 Feb  8 20:50 runpilot2-wrapper.sh
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc      5111 Feb  8 20:51 queuedata.json
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc       100 Feb  9 12:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 14:23:01] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 12:24 run_atlas
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc       105 Feb  9 12:24 job.xml
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc 688379860 Feb  9 12:24 EVNT.48431094._000568.pool.root.1
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc    597968 Feb  9 12:24 input.tar.gz
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc     15845 Feb  9 12:24 start_atlas.sh
[2026-02-09 14:23:01] drwxrwx--x 2 boinc boinc      4096 Feb  9 12:24 shared
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc         0 Feb  9 12:24 boinc_setup_complete
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc      6448 Feb  9 12:24 init_data.xml
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc         0 Feb  9 12:24 boinc_lockfile
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc      2556 Feb  9 12:24 pandaJob.out
[2026-02-09 14:23:01] -rw------- 1 boinc boinc   1009480 Feb  9 12:24 agis_schedconf.cvmfs.json
[2026-02-09 14:23:01] -rw------- 1 boinc boinc   1513144 Feb  9 12:24 agis_ddmendpoints.agis.ALL.json
[2026-02-09 14:23:01] -rw------- 1 boinc boinc       427 Feb  9 12:24 workernode_map.json
[2026-02-09 14:23:01] drwx------ 5 boinc boinc      4096 Feb  9 12:24 pilot3
[2026-02-09 14:23:01] -rw------- 1 boinc boinc 283185095 Feb  9 14:21 HITS.48431096._011563.pool.root.1
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc       530 Feb  9 14:21 boinc_task_state.xml
[2026-02-09 14:23:01] -rw------- 1 boinc boinc      1019 Feb  9 14:22 memory_monitor_summary.json
[2026-02-09 14:23:01] -rw------- 1 boinc boinc        95 Feb  9 14:22 pilot_heartbeat.json
[2026-02-09 14:23:01] -rw------- 1 boinc boinc    325092 Feb  9 14:22 log.48431096._011563.job.log.tgz.1
[2026-02-09 14:23:01] -rw------- 1 boinc boinc      6304 Feb  9 14:22 heartbeat.json
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc        27 Feb  9 14:22 wrapper_checkpoint.txt
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc      8192 Feb  9 14:22 boinc_mmap_file
[2026-02-09 14:23:01] -rw------- 1 boinc boinc      5006 Feb  9 14:23 pilotlog.txt
[2026-02-09 14:23:01] -rw------- 1 boinc boinc   1015340 Feb  9 14:23 log.48431096._011563.job.log.1
[2026-02-09 14:23:01] -rw------- 1 boinc boinc       357 Feb  9 14:23 output.list
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc       620 Feb  9 14:23 runtime_log
[2026-02-09 14:23:01] -rw------- 1 boinc boinc   1361920 Feb  9 14:23 result.tar.gz
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc      8916 Feb  9 14:23 runtime_log.err
[2026-02-09 14:23:01] -rw------- 1 boinc boinc       661 Feb  9 14:23 EyGODm7yP98n9Rq4apOajLDm4fhM0noT9bVooX4SDmIidKDmNmTFwm.diag
[2026-02-09 14:23:01] -rw-r--r-- 1 boinc boinc     11340 Feb  9 14:23 stderr.txt
[2026-02-09 14:23:01] HITS file was successfully produced:
[2026-02-09 14:23:01] -rw------- 1 boinc boinc 283185095 Feb  9 14:21 shared/HITS.pool.root.1
[2026-02-09 14:23:01]  *** Contents of shared directory: ***
[2026-02-09 14:23:01] total 950736
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc 688379860 Feb  9 12:24 ATLAS.root_0
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc    597968 Feb  9 12:24 input.tar.gz
[2026-02-09 14:23:01] -rw-r--r-- 2 boinc boinc     15845 Feb  9 12:24 start_atlas.sh
[2026-02-09 14:23:01] -rw------- 1 boinc boinc 283185095 Feb  9 14:21 HITS.pool.root.1
[2026-02-09 14:23:01] -rw------- 1 boinc boinc   1361920 Feb  9 14:23 result.tar.gz
14:23:03 (3631642): run_atlas exited; CPU time 20408.733855
14:23:03 (3631642): called boinc_finish(0)

</stderr_txt>
]]>

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