Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:35:19 (3793039): wrapper (7.7.26015): starting
11:35:19 (3793039): wrapper: running run_atlas (--nthreads 2)
[2026-02-09 11:35:19] Arguments: --nthreads 2
[2026-02-09 11:35:19] Threads: 2
[2026-02-09 11:35:19] Checking for CVMFS
[2026-02-09 11:35:19] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 11:35:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 11:35:20] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 11:35:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 11:35:20] 2.9.2.0 3340523 4662 59100 156052 3 49 29203960 36864001 0 130560 0 1348889 99.977 173741 14363 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 11:35:20] CVMFS is ok
[2026-02-09 11:35:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 11:35:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 11:35:20] Further information can be found at the LHC@home message board.
[2026-02-09 11:35:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 11:35:20] Checking for apptainer binary...
[2026-02-09 11:35:20] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 11:35:20] Running /usr/bin/apptainer --version
[2026-02-09 11:35:20] apptainer version 1.4.1-1.1
[2026-02-09 11:35:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 11:35:20] thA315
[2026-02-09 11:35:20] apptainer works
[2026-02-09 11:35:20] Set ATHENA_PROC_NUMBER=2
[2026-02-09 11:35:20] Set ATHENA_CORE_NUMBER=2
[2026-02-09 11:35:20] Starting ATLAS job with PandaID=7005773844
[2026-02-09 11:35:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 13:41:59]  *** The last 200 lines of the pilot log: ***
[2026-02-09 13:41:59] 2026-02-09 12:41:07,070 | INFO     | --- collectZombieJob: --- 10, [3801476]
[2026-02-09 13:41:59] 2026-02-09 12:41:07,071 | INFO     | zombie collector waiting for pid 3801476
[2026-02-09 13:41:59] 2026-02-09 12:41:07,071 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 13:41:59] 2026-02-09 12:41:07,071 | INFO     | collected zombie processes
[2026-02-09 13:41:59] 2026-02-09 12:41:07,071 | INFO     | will attempt to kill all subprocesses of pid=3801476
[2026-02-09 13:41:59] 2026-02-09 12:41:07,110 | INFO     | process IDs to be killed: [3801476] (in reverse order)
[2026-02-09 13:41:59] 2026-02-09 12:41:07,133 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 13:41:59] 2026-02-09 12:41:07,134 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 13:41:59] 2026-02-09 12:41:07,139 | INFO     | did not find any defunct processes belonging to 3801476
[2026-02-09 13:41:59] 2026-02-09 12:41:07,143 | INFO     | did not find any defunct processes belonging to 3801476
[2026-02-09 13:41:59] 2026-02-09 12:41:07,144 | INFO     | ready for new job
[2026-02-09 13:41:59] 2026-02-09 12:41:07,144 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 13:41:59] 2026-02-09 12:41:07,146 | INFO     | **************************************
[2026-02-09 13:41:59] 2026-02-09 12:41:07,147 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 13:41:59] 2026-02-09 12:41:07,147 | INFO     | **************************************
[2026-02-09 13:41:59] 2026-02-09 12:41:07,147 | INFO     | 
[2026-02-09 13:41:59] 2026-02-09 12:41:07,148 | INFO     | architecture information:
[2026-02-09 13:41:59] 2026-02-09 12:41:07,149 | INFO     | executing command: cat /etc/os-release
[2026-02-09 13:41:59] 2026-02-09 12:41:07,173 | INFO     | cat /etc/os-release:
[2026-02-09 13:41:59] NAME="CentOS Linux"
[2026-02-09 13:41:59] VERSION="7 (Core)"
[2026-02-09 13:41:59] ID="centos"
[2026-02-09 13:41:59] ID_LIKE="rhel fedora"
[2026-02-09 13:41:59] VERSION_ID="7"
[2026-02-09 13:41:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 13:41:59] ANSI_COLOR="0;31"
[2026-02-09 13:41:59] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 13:41:59] HOME_URL="https://www.centos.org/"
[2026-02-09 13:41:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 13:41:59] 
[2026-02-09 13:41:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 13:41:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 13:41:59] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 13:41:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 13:41:59] 
[2026-02-09 13:41:59] 2026-02-09 12:41:07,173 | INFO     | **************************************
[2026-02-09 13:41:59] 2026-02-09 12:41:07,676 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 13:41:59] 2026-02-09 12:41:07,689 | INFO     | sufficient remaining disk space (492298043392 B)
[2026-02-09 13:41:59] 2026-02-09 12:41:07,689 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 13:41:59] 2026-02-09 12:41:07,689 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 13:41:59] 2026-02-09 12:41:07,690 | INFO     | update_server=False
[2026-02-09 13:41:59] 2026-02-09 12:41:07,690 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 13:41:59] 2026-02-09 12:41:07,690 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 13:41:59] 2026-02-09 12:41:07,690 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 13:41:59] 2026-02-09 12:41:07,690 | INFO     | aborting loop
[2026-02-09 13:41:59] 2026-02-09 12:41:07,737 | INFO     | all data control threads have been joined
[2026-02-09 13:41:59] 2026-02-09 12:41:08,695 | INFO     | [job] retrieve thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,696 | INFO     | [job] queue monitor thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,696 | INFO     | [job] job monitor thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,711 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,724 | INFO     | [payload] failed_post thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,740 | INFO     | [data] control thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:08,778 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 13:41:59] 2026-02-09 12:41:08,818 | INFO     | all payload control threads have been joined
[2026-02-09 13:41:59] 2026-02-09 12:41:08,961 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:09,141 | INFO     | all job control threads have been joined
[2026-02-09 13:41:59] 2026-02-09 12:41:09,422 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 13:41:59] 2026-02-09 12:41:09,490 | INFO     | [payload] validate_post thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:09,824 | INFO     | [payload] control thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:10,036 | INFO     | [job] validate thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:10,089 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:10,112 | INFO     | [data] copytool_in thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:10,146 | INFO     | [job] control thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:10,784 | INFO     | [data] copytool_out thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:13,429 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:18,097 | INFO     | job.realtimelogging is not enabled
[2026-02-09 13:41:59] 2026-02-09 12:41:19,103 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 13:41:59] 2026-02-09 12:41:38,770 | INFO     | PID=3797065 has CPU usage=1.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 13:41:59] 2026-02-09 12:41:38,770 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 13:41:59] 2026-02-09 12:41:38,771 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 13:41:59] 2026-02-09 12:41:38,771 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 13:41:59] 2026-02-09 12:41:52,573 | INFO     | [monitor] cgroup control has ended
[2026-02-09 13:41:59] 2026-02-09 12:41:54,676 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140538926761792)>', '<ExcThread(monitor, started 140538300851968)>']
[2026-02-09 13:41:59] 2026-02-09 12:41:54,850 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 13:41:59] 2026-02-09 12:41:54,851 | INFO     | [monitor] control thread has ended
[2026-02-09 13:41:59] 2026-02-09 12:41:59,701 | INFO     | all workflow threads have been joined
[2026-02-09 13:41:59] 2026-02-09 12:41:59,702 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 13:41:59] 2026-02-09 12:41:59,702 | INFO     | traces error code: 0
[2026-02-09 13:41:59] 2026-02-09 12:41:59,703 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 13:41:59] 2026-02-09 12:41:59,745 [wrapper] ==== pilot stdout END ====
[2026-02-09 13:41:59] 2026-02-09 12:41:59,748 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 13:41:59] 2026-02-09 12:41:59,750 [wrapper] pilotpid: 3797065
[2026-02-09 13:41:59] 2026-02-09 12:41:59,752 [wrapper] Pilot exit status: 0
[2026-02-09 13:41:59] 2026-02-09 12:41:59,758 [wrapper] pandaids: 7005773844
[2026-02-09 13:41:59] 2026-02-09 12:41:59,771 [wrapper] cleanup supervisor_pilot 3809467 3797066
[2026-02-09 13:41:59] 2026-02-09 12:41:59,773 [wrapper] Test setup, not cleaning
[2026-02-09 13:41:59] 2026-02-09 12:41:59,775 [wrapper] apfmon messages muted
[2026-02-09 13:41:59] 2026-02-09 12:41:59,777 [wrapper] ==== wrapper stdout END ====
[2026-02-09 13:41:59] 2026-02-09 12:41:59,779 [wrapper] ==== wrapper stderr END ====
[2026-02-09 13:41:59]  *** Error codes and diagnostics ***
[2026-02-09 13:41:59]     "exeErrorCode": 0,
[2026-02-09 13:41:59]     "exeErrorDiag": "",
[2026-02-09 13:41:59]     "pilotErrorCode": 0,
[2026-02-09 13:41:59]     "pilotErrorDiag": "",
[2026-02-09 13:41:59]  *** Listing of results directory ***
[2026-02-09 13:41:59] total 679180
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc    584627 Feb  8 20:50 pilot3.tar.gz
[2026-02-09 13:41:59] -rwx------ 1 boinc boinc     36322 Feb  8 20:51 runpilot2-wrapper.sh
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc      5111 Feb  8 20:53 queuedata.json
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc       100 Feb  9 11:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 13:41:59] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 11:35 run_atlas
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc       105 Feb  9 11:35 job.xml
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc 502081752 Feb  9 11:35 EVNT.48318008._000250.pool.root.1
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc    597953 Feb  9 11:35 input.tar.gz
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:35 start_atlas.sh
[2026-02-09 13:41:59] drwxrwx--x 2 boinc boinc      4096 Feb  9 11:35 shared
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:35 boinc_setup_complete
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc      6206 Feb  9 11:35 init_data.xml
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:35 boinc_lockfile
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc      2527 Feb  9 11:35 pandaJob.out
[2026-02-09 13:41:59] -rw------- 1 boinc boinc   1009488 Feb  9 11:35 agis_schedconf.cvmfs.json
[2026-02-09 13:41:59] -rw------- 1 boinc boinc   1513144 Feb  9 11:35 agis_ddmendpoints.agis.ALL.json
[2026-02-09 13:41:59] -rw------- 1 boinc boinc       419 Feb  9 11:35 workernode_map.json
[2026-02-09 13:41:59] drwx------ 5 boinc boinc      4096 Feb  9 11:35 pilot3
[2026-02-09 13:41:59] -rw------- 1 boinc boinc 186759378 Feb  9 13:40 HITS.48318010._013922.pool.root.1
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc       530 Feb  9 13:40 boinc_task_state.xml
[2026-02-09 13:41:59] -rw------- 1 boinc boinc      1020 Feb  9 13:40 memory_monitor_summary.json
[2026-02-09 13:41:59] -rw------- 1 boinc boinc    275671 Feb  9 13:41 log.48318010._013922.job.log.tgz.1
[2026-02-09 13:41:59] -rw------- 1 boinc boinc      6304 Feb  9 13:41 heartbeat.json
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc      8192 Feb  9 13:41 boinc_mmap_file
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc        27 Feb  9 13:41 wrapper_checkpoint.txt
[2026-02-09 13:41:59] -rw------- 1 boinc boinc        95 Feb  9 13:41 pilot_heartbeat.json
[2026-02-09 13:41:59] -rw------- 1 boinc boinc      4820 Feb  9 13:41 pilotlog.txt
[2026-02-09 13:41:59] -rw------- 1 boinc boinc   1081316 Feb  9 13:41 log.48318010._013922.job.log.1
[2026-02-09 13:41:59] -rw------- 1 boinc boinc       357 Feb  9 13:41 output.list
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc       620 Feb  9 13:41 runtime_log
[2026-02-09 13:41:59] -rw------- 1 boinc boinc   1372160 Feb  9 13:41 result.tar.gz
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc      8896 Feb  9 13:41 runtime_log.err
[2026-02-09 13:41:59] -rw------- 1 boinc boinc       658 Feb  9 13:41 VKLODmNzP98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmLIeKDm6DljSm.diag
[2026-02-09 13:41:59] -rw-r--r-- 1 boinc boinc     10705 Feb  9 13:41 stderr.txt
[2026-02-09 13:41:59] HITS file was successfully produced:
[2026-02-09 13:41:59] -rw------- 1 boinc boinc 186759378 Feb  9 13:40 shared/HITS.pool.root.1
[2026-02-09 13:41:59]  *** Contents of shared directory: ***
[2026-02-09 13:41:59] total 674648
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc 502081752 Feb  9 11:35 ATLAS.root_0
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc    597953 Feb  9 11:35 input.tar.gz
[2026-02-09 13:41:59] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:35 start_atlas.sh
[2026-02-09 13:41:59] -rw------- 1 boinc boinc 186759378 Feb  9 13:40 HITS.pool.root.1
[2026-02-09 13:41:59] -rw------- 1 boinc boinc   1372160 Feb  9 13:41 result.tar.gz
13:42:01 (3793039): run_atlas exited; CPU time 14670.759016
13:42:01 (3793039): called boinc_finish(0)

</stderr_txt>
]]>

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