Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:53:07 (291662): wrapper (7.7.26015): starting
10:53:07 (291662): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 10:53:07] Arguments: --nthreads 4
[2026-02-09 10:53:07] Threads: 4
[2026-02-09 10:53:07] Checking for CVMFS
[2026-02-09 10:53:07] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 10:53:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 10:53:07] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 10:53:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 10:53:07] 2.9.2.0 3731233 4469 96920 156050 0 50 24861699 36864000 0 130560 0 2118093 99.985 160846 13142 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 10:53:07] CVMFS is ok
[2026-02-09 10:53:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 10:53:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 10:53:07] Further information can be found at the LHC@home message board.
[2026-02-09 10:53:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 10:53:07] Checking for apptainer binary...
[2026-02-09 10:53:07] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 10:53:07] Running /usr/bin/apptainer --version
[2026-02-09 10:53:07] apptainer version 1.4.1-1.1
[2026-02-09 10:53:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 10:53:08] thA332a
[2026-02-09 10:53:08] apptainer works
[2026-02-09 10:53:08] Set ATHENA_PROC_NUMBER=4
[2026-02-09 10:53:08] Set ATHENA_CORE_NUMBER=4
[2026-02-09 10:53:08] Starting ATLAS job with PandaID=7008209813
[2026-02-09 10:53:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 12:38:40]  *** The last 200 lines of the pilot log: ***
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | job 7008209813 has completed (purged errors)
[2026-02-09 12:38:40] 2026-02-09 11:38:08,217 | INFO     | overall cleanup function is called
[2026-02-09 12:38:40] 2026-02-09 11:38:09,224 | INFO     | --- collectZombieJob: --- 10, [300275]
[2026-02-09 12:38:40] 2026-02-09 11:38:09,224 | INFO     | zombie collector waiting for pid 300275
[2026-02-09 12:38:40] 2026-02-09 11:38:09,224 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 12:38:40] 2026-02-09 11:38:09,225 | INFO     | collected zombie processes
[2026-02-09 12:38:40] 2026-02-09 11:38:09,225 | INFO     | will attempt to kill all subprocesses of pid=300275
[2026-02-09 12:38:40] 2026-02-09 11:38:09,270 | INFO     | process IDs to be killed: [300275] (in reverse order)
[2026-02-09 12:38:40] 2026-02-09 11:38:09,306 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 12:38:40] 2026-02-09 11:38:09,306 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 12:38:40] 2026-02-09 11:38:09,308 | INFO     | did not find any defunct processes belonging to 300275
[2026-02-09 12:38:40] 2026-02-09 11:38:09,309 | INFO     | did not find any defunct processes belonging to 300275
[2026-02-09 12:38:40] 2026-02-09 11:38:09,309 | INFO     | ready for new job
[2026-02-09 12:38:40] 2026-02-09 11:38:09,310 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 12:38:40] 2026-02-09 11:38:09,310 | INFO     | **************************************
[2026-02-09 12:38:40] 2026-02-09 11:38:09,310 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 12:38:40] 2026-02-09 11:38:09,310 | INFO     | **************************************
[2026-02-09 12:38:40] 2026-02-09 11:38:09,310 | INFO     | 
[2026-02-09 12:38:40] 2026-02-09 11:38:09,311 | INFO     | architecture information:
[2026-02-09 12:38:40] 2026-02-09 11:38:09,311 | INFO     | executing command: cat /etc/os-release
[2026-02-09 12:38:40] 2026-02-09 11:38:09,325 | INFO     | cat /etc/os-release:
[2026-02-09 12:38:40] NAME="CentOS Linux"
[2026-02-09 12:38:40] VERSION="7 (Core)"
[2026-02-09 12:38:40] ID="centos"
[2026-02-09 12:38:40] ID_LIKE="rhel fedora"
[2026-02-09 12:38:40] VERSION_ID="7"
[2026-02-09 12:38:40] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 12:38:40] ANSI_COLOR="0;31"
[2026-02-09 12:38:40] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 12:38:40] HOME_URL="https://www.centos.org/"
[2026-02-09 12:38:40] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 12:38:40] 
[2026-02-09 12:38:40] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 12:38:40] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 12:38:40] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 12:38:40] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 12:38:40] 
[2026-02-09 12:38:40] 2026-02-09 11:38:09,326 | INFO     | **************************************
[2026-02-09 12:38:40] 2026-02-09 11:38:09,829 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 12:38:40] 2026-02-09 11:38:09,847 | INFO     | sufficient remaining disk space (330653761536 B)
[2026-02-09 12:38:40] 2026-02-09 11:38:09,847 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | INFO     | update_server=False
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:38:40] 2026-02-09 11:38:09,848 | INFO     | aborting loop
[2026-02-09 12:38:40] 2026-02-09 11:38:10,105 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 12:38:40] 2026-02-09 11:38:10,231 | INFO     | all payload control threads have been joined
[2026-02-09 12:38:40] 2026-02-09 11:38:10,337 | INFO     | all job control threads have been joined
[2026-02-09 12:38:40] 2026-02-09 11:38:10,608 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 12:38:40] 2026-02-09 11:38:10,634 | INFO     | all data control threads have been joined
[2026-02-09 12:38:40] 2026-02-09 11:38:10,853 | INFO     | [job] retrieve thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:10,854 | INFO     | [job] queue monitor thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:10,854 | INFO     | [job] job monitor thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:10,974 | INFO     | [data] copytool_in thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:11,237 | INFO     | [payload] control thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:11,343 | INFO     | [job] control thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:11,636 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:11,640 | INFO     | [data] control thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,112 | INFO     | [data] copytool_out thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,195 | INFO     | [job] validate thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,277 | INFO     | [payload] validate_post thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,280 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,345 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:12,360 | INFO     | [payload] failed_post thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:14,615 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:15,619 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-09 12:38:40] 2026-02-09 11:38:20,821 | INFO     | job.realtimelogging is not enabled
[2026-02-09 12:38:40] 2026-02-09 11:38:21,827 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 12:38:40] 2026-02-09 11:38:28,325 | INFO     | [monitor] cgroup control has ended
[2026-02-09 12:38:40] 2026-02-09 11:38:29,124 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140379681466176)>', '<ExcThread(monitor, started 140378523039488)>']
[2026-02-09 12:38:40] 2026-02-09 11:38:34,150 | INFO     | all workflow threads have been joined
[2026-02-09 12:38:40] 2026-02-09 11:38:34,150 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 12:38:40] 2026-02-09 11:38:34,150 | INFO     | traces error code: 0
[2026-02-09 12:38:40] 2026-02-09 11:38:34,150 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | INFO     | PID=295767 has CPU usage=0.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | CRITICAL | thread 'MainThread' is not alive
[2026-02-09 12:38:40] 2026-02-09 11:38:40,470 | INFO     | [monitor] control thread has ended
[2026-02-09 12:38:40] 2026-02-09 11:38:40,546 [wrapper] ==== pilot stdout END ====
[2026-02-09 12:38:40] 2026-02-09 11:38:40,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 12:38:40] 2026-02-09 11:38:40,555 [wrapper] pilotpid: 295767
[2026-02-09 12:38:40] 2026-02-09 11:38:40,560 [wrapper] Pilot exit status: 0
[2026-02-09 12:38:40] 2026-02-09 11:38:40,572 [wrapper] pandaids: 7008209813
[2026-02-09 12:38:40] 2026-02-09 11:38:40,595 [wrapper] cleanup supervisor_pilot  307458 295768
[2026-02-09 12:38:40] 2026-02-09 11:38:40,599 [wrapper] Test setup, not cleaning
[2026-02-09 12:38:40] 2026-02-09 11:38:40,603 [wrapper] apfmon messages muted
[2026-02-09 12:38:40] 2026-02-09 11:38:40,607 [wrapper] ==== wrapper stdout END ====
[2026-02-09 12:38:40] 2026-02-09 11:38:40,611 [wrapper] ==== wrapper stderr END ====
[2026-02-09 12:38:40]  *** Error codes and diagnostics ***
[2026-02-09 12:38:40]     "exeErrorCode": 0,
[2026-02-09 12:38:40]     "exeErrorDiag": "",
[2026-02-09 12:38:40]     "pilotErrorCode": 0,
[2026-02-09 12:38:40]     "pilotErrorDiag": "",
[2026-02-09 12:38:40]  *** Listing of results directory ***
[2026-02-09 12:38:40] total 935456
[2026-02-09 12:38:40] -rwx------ 1 boinc boinc     36322 Feb  8 20:50 runpilot2-wrapper.sh
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc    584627 Feb  8 20:50 pilot3.tar.gz
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc      5111 Feb  8 20:50 queuedata.json
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc       100 Feb  9 10:53 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 12:38:40] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 10:53 run_atlas
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc       105 Feb  9 10:53 job.xml
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc 672898735 Feb  9 10:53 EVNT.48431094._000325.pool.root.1
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc    597964 Feb  9 10:53 input.tar.gz
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:53 start_atlas.sh
[2026-02-09 12:38:40] drwxrwx--x 2 boinc boinc      4096 Feb  9 10:53 shared
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:53 boinc_setup_complete
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc      6370 Feb  9 10:53 init_data.xml
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:53 boinc_lockfile
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc      2554 Feb  9 10:53 pandaJob.out
[2026-02-09 12:38:40] -rw------- 1 boinc boinc   1009488 Feb  9 10:53 agis_schedconf.cvmfs.json
[2026-02-09 12:38:40] -rw------- 1 boinc boinc   1513144 Feb  9 10:53 agis_ddmendpoints.agis.ALL.json
[2026-02-09 12:38:40] -rw------- 1 boinc boinc       428 Feb  9 10:53 workernode_map.json
[2026-02-09 12:38:40] drwx------ 5 boinc boinc      4096 Feb  9 10:53 pilot3
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc       530 Feb  9 12:37 boinc_task_state.xml
[2026-02-09 12:38:40] -rw------- 1 boinc boinc 278642267 Feb  9 12:37 HITS.48431096._010782.pool.root.1
[2026-02-09 12:38:40] -rw------- 1 boinc boinc        95 Feb  9 12:37 pilot_heartbeat.json
[2026-02-09 12:38:40] -rw------- 1 boinc boinc      1019 Feb  9 12:37 memory_monitor_summary.json
[2026-02-09 12:38:40] -rw------- 1 boinc boinc    313054 Feb  9 12:38 log.48431096._010782.job.log.tgz.1
[2026-02-09 12:38:40] -rw------- 1 boinc boinc      6308 Feb  9 12:38 heartbeat.json
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc      8192 Feb  9 12:38 boinc_mmap_file
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc        27 Feb  9 12:38 wrapper_checkpoint.txt
[2026-02-09 12:38:40] -rw------- 1 boinc boinc       816 Feb  9 12:38 pilotlog.txt
[2026-02-09 12:38:40] -rw------- 1 boinc boinc    908245 Feb  9 12:38 log.48431096._010782.job.log.1
[2026-02-09 12:38:40] -rw------- 1 boinc boinc       357 Feb  9 12:38 output.list
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc       620 Feb  9 12:38 runtime_log
[2026-02-09 12:38:40] -rw------- 1 boinc boinc   1239040 Feb  9 12:38 result.tar.gz
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc      8901 Feb  9 12:38 runtime_log.err
[2026-02-09 12:38:40] -rw------- 1 boinc boinc       658 Feb  9 12:38 r5zMDmTyP98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmmCeKDmInLMLm.diag
[2026-02-09 12:38:40] -rw-r--r-- 1 boinc boinc     11999 Feb  9 12:38 stderr.txt
[2026-02-09 12:38:40] HITS file was successfully produced:
[2026-02-09 12:38:40] -rw------- 1 boinc boinc 278642267 Feb  9 12:37 shared/HITS.pool.root.1
[2026-02-09 12:38:40]  *** Contents of shared directory: ***
[2026-02-09 12:38:40] total 931060
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc 672898735 Feb  9 10:53 ATLAS.root_0
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc    597964 Feb  9 10:53 input.tar.gz
[2026-02-09 12:38:40] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:53 start_atlas.sh
[2026-02-09 12:38:40] -rw------- 1 boinc boinc 278642267 Feb  9 12:37 HITS.pool.root.1
[2026-02-09 12:38:40] -rw------- 1 boinc boinc   1239040 Feb  9 12:38 result.tar.gz
12:38:42 (291662): run_atlas exited; CPU time 23973.697452
12:38:42 (291662): called boinc_finish(0)

</stderr_txt>
]]>

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