Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
09:35:18 (3320870): wrapper (7.7.26015): starting
09:35:18 (3320870): wrapper: running run_atlas (--nthreads 2)
[2026-02-09 09:35:18] Arguments: --nthreads 2
[2026-02-09 09:35:18] Threads: 2
[2026-02-09 09:35:18] Checking for CVMFS
[2026-02-09 09:35:18] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 09:35:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 09:35:18] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 09:35:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 09:35:18] 2.9.2.0 2908847 4288 59272 156049 0 50 22713493 36864001 0 130560 0 1227085 99.976 157665 11071 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 09:35:18] CVMFS is ok
[2026-02-09 09:35:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 09:35:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 09:35:18] Further information can be found at the LHC@home message board.
[2026-02-09 09:35:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 09:35:18] Checking for apptainer binary...
[2026-02-09 09:35:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 09:35:18] Running /usr/bin/apptainer --version
[2026-02-09 09:35:18] apptainer version 1.4.1-1.1
[2026-02-09 09:35:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 09:35:18] madmaxA277a
[2026-02-09 09:35:18] apptainer works
[2026-02-09 09:35:18] Set ATHENA_PROC_NUMBER=2
[2026-02-09 09:35:18] Set ATHENA_CORE_NUMBER=2
[2026-02-09 09:35:18] Starting ATLAS job with PandaID=7005738150
[2026-02-09 09:35:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 11:37:55]  *** The last 200 lines of the pilot log: ***
[2026-02-09 11:37:55] 2026-02-09 10:36:58,648 | INFO     | overall cleanup function is called
[2026-02-09 11:37:55] 2026-02-09 10:36:59,653 | INFO     | --- collectZombieJob: --- 10, [3329303]
[2026-02-09 11:37:55] 2026-02-09 10:36:59,654 | INFO     | zombie collector waiting for pid 3329303
[2026-02-09 11:37:55] 2026-02-09 10:36:59,654 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 11:37:55] 2026-02-09 10:36:59,654 | INFO     | collected zombie processes
[2026-02-09 11:37:55] 2026-02-09 10:36:59,654 | INFO     | will attempt to kill all subprocesses of pid=3329303
[2026-02-09 11:37:55] 2026-02-09 10:36:59,686 | INFO     | process IDs to be killed: [3329303] (in reverse order)
[2026-02-09 11:37:55] 2026-02-09 10:36:59,706 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 11:37:55] 2026-02-09 10:36:59,707 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 11:37:55] 2026-02-09 10:36:59,711 | INFO     | did not find any defunct processes belonging to 3329303
[2026-02-09 11:37:55] 2026-02-09 10:36:59,714 | INFO     | did not find any defunct processes belonging to 3329303
[2026-02-09 11:37:55] 2026-02-09 10:36:59,714 | INFO     | ready for new job
[2026-02-09 11:37:55] 2026-02-09 10:36:59,714 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 11:37:55] 2026-02-09 10:36:59,716 | INFO     | **************************************
[2026-02-09 11:37:55] 2026-02-09 10:36:59,716 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 11:37:55] 2026-02-09 10:36:59,716 | INFO     | **************************************
[2026-02-09 11:37:55] 2026-02-09 10:36:59,716 | INFO     | 
[2026-02-09 11:37:55] 2026-02-09 10:36:59,717 | INFO     | architecture information:
[2026-02-09 11:37:55] 2026-02-09 10:36:59,717 | INFO     | executing command: cat /etc/os-release
[2026-02-09 11:37:55] 2026-02-09 10:36:59,725 | INFO     | cat /etc/os-release:
[2026-02-09 11:37:55] NAME="CentOS Linux"
[2026-02-09 11:37:55] VERSION="7 (Core)"
[2026-02-09 11:37:55] ID="centos"
[2026-02-09 11:37:55] ID_LIKE="rhel fedora"
[2026-02-09 11:37:55] VERSION_ID="7"
[2026-02-09 11:37:55] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 11:37:55] ANSI_COLOR="0;31"
[2026-02-09 11:37:55] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 11:37:55] HOME_URL="https://www.centos.org/"
[2026-02-09 11:37:55] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 11:37:55] 
[2026-02-09 11:37:55] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 11:37:55] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 11:37:55] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 11:37:55] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 11:37:55] 
[2026-02-09 11:37:55] 2026-02-09 10:36:59,725 | INFO     | **************************************
[2026-02-09 11:37:55] 2026-02-09 10:37:00,227 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | INFO     | sufficient remaining disk space (493652803584 B)
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | INFO     | update_server=False
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 11:37:55] 2026-02-09 10:37:00,238 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:37:55] 2026-02-09 10:37:00,698 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 11:37:55] 2026-02-09 10:37:00,725 | INFO     | all job control threads have been joined
[2026-02-09 11:37:55] 2026-02-09 10:37:00,779 | INFO     | all payload control threads have been joined
[2026-02-09 11:37:55] 2026-02-09 10:37:01,017 | INFO     | all data control threads have been joined
[2026-02-09 11:37:55] 2026-02-09 10:37:01,070 | WARNING  | process 3329303 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 11:37:55] 2026-02-09 10:37:01,092 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 11:37:55] 2026-02-09 10:37:01,120 | INFO     | number of running child processes to parent process 3329303: 1
[2026-02-09 11:37:55] 2026-02-09 10:37:01,120 | INFO     | maximum number of monitored processes: 6
[2026-02-09 11:37:55] 2026-02-09 10:37:01,120 | INFO     | aborting job monitoring since job object (job id=7005738150) has expired
[2026-02-09 11:37:55] 2026-02-09 10:37:01,120 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:37:55] 2026-02-09 10:37:01,120 | INFO     | will abort loop
[2026-02-09 11:37:55] 2026-02-09 10:37:01,244 | INFO     | [job] retrieve thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,244 | INFO     | [job] queue monitor thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,287 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,415 | INFO     | [data] copytool_in thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,716 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,730 | INFO     | [job] control thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:01,785 | INFO     | [payload] control thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,022 | INFO     | [data] control thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,044 | INFO     | [payload] validate_post thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,126 | INFO     | [job] job monitor thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,292 | INFO     | [payload] failed_post thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,467 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,581 | INFO     | [job] validate thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,587 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:02,704 | INFO     | [data] copytool_out thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:03,722 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 11:37:55] 2026-02-09 10:37:07,729 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 11:37:55] 2026-02-09 10:37:30,920 | INFO     | PID=3324894 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 11:37:55] 2026-02-09 10:37:30,920 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 11:37:55] 2026-02-09 10:37:30,920 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 11:37:55] 2026-02-09 10:37:30,920 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 11:37:55] 2026-02-09 10:37:48,718 | INFO     | [monitor] cgroup control has ended
[2026-02-09 11:37:55] 2026-02-09 10:37:50,608 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140707324340032)>', '<ExcThread(monitor, started 140706593097472)>']
[2026-02-09 11:37:55] 2026-02-09 10:37:51,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 11:37:55] 2026-02-09 10:37:51,026 | INFO     | [monitor] control thread has ended
[2026-02-09 11:37:55] 2026-02-09 10:37:55,634 | INFO     | all workflow threads have been joined
[2026-02-09 11:37:55] 2026-02-09 10:37:55,634 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 11:37:55] 2026-02-09 10:37:55,635 | INFO     | traces error code: 0
[2026-02-09 11:37:55] 2026-02-09 10:37:55,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 11:37:55] 2026-02-09 10:37:55,678 [wrapper] ==== pilot stdout END ====
[2026-02-09 11:37:55] 2026-02-09 10:37:55,681 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 11:37:55] 2026-02-09 10:37:55,683 [wrapper] pilotpid: 3324894
[2026-02-09 11:37:55] 2026-02-09 10:37:55,685 [wrapper] Pilot exit status: 0
[2026-02-09 11:37:55] 2026-02-09 10:37:55,691 [wrapper] pandaids: 7005738150
[2026-02-09 11:37:55] 2026-02-09 10:37:55,704 [wrapper] cleanup supervisor_pilot 3334201 3324895
[2026-02-09 11:37:55] 2026-02-09 10:37:55,706 [wrapper] Test setup, not cleaning
[2026-02-09 11:37:55] 2026-02-09 10:37:55,708 [wrapper] apfmon messages muted
[2026-02-09 11:37:55] 2026-02-09 10:37:55,710 [wrapper] ==== wrapper stdout END ====
[2026-02-09 11:37:55] 2026-02-09 10:37:55,712 [wrapper] ==== wrapper stderr END ====
[2026-02-09 11:37:55]  *** Error codes and diagnostics ***
[2026-02-09 11:37:55]     "exeErrorCode": 0,
[2026-02-09 11:37:55]     "exeErrorDiag": "",
[2026-02-09 11:37:55]     "pilotErrorCode": 0,
[2026-02-09 11:37:55]     "pilotErrorDiag": "",
[2026-02-09 11:37:55]  *** Listing of results directory ***
[2026-02-09 11:37:55] total 661428
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc    584627 Feb  8 18:49 pilot3.tar.gz
[2026-02-09 11:37:55] -rwx------ 1 boinc boinc     36322 Feb  8 18:52 runpilot2-wrapper.sh
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc      5111 Feb  8 18:54 queuedata.json
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc       100 Feb  9 09:35 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 11:37:55] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 09:35 run_atlas
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc       105 Feb  9 09:35 job.xml
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc 490092922 Feb  9 09:35 EVNT.48442027._000120.pool.root.1
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc    597960 Feb  9 09:35 input.tar.gz
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc     15845 Feb  9 09:35 start_atlas.sh
[2026-02-09 11:37:55] drwxrwx--x 2 boinc boinc      4096 Feb  9 09:35 shared
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc         0 Feb  9 09:35 boinc_setup_complete
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc      6210 Feb  9 09:35 init_data.xml
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc         0 Feb  9 09:35 boinc_lockfile
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc      2528 Feb  9 09:35 pandaJob.out
[2026-02-09 11:37:55] -rw------- 1 boinc boinc   1009488 Feb  9 09:35 agis_schedconf.cvmfs.json
[2026-02-09 11:37:55] -rw------- 1 boinc boinc   1513144 Feb  9 09:35 agis_ddmendpoints.agis.ALL.json
[2026-02-09 11:37:55] -rw------- 1 boinc boinc       424 Feb  9 09:35 workernode_map.json
[2026-02-09 11:37:55] drwx------ 5 boinc boinc      4096 Feb  9 09:35 pilot3
[2026-02-09 11:37:55] -rw------- 1 boinc boinc 180634859 Feb  9 11:36 HITS.48442031._007077.pool.root.1
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc       530 Feb  9 11:36 boinc_task_state.xml
[2026-02-09 11:37:55] -rw------- 1 boinc boinc      1017 Feb  9 11:36 memory_monitor_summary.json
[2026-02-09 11:37:55] -rw------- 1 boinc boinc    273064 Feb  9 11:36 log.48442031._007077.job.log.tgz.1
[2026-02-09 11:37:55] -rw------- 1 boinc boinc      6308 Feb  9 11:36 heartbeat.json
[2026-02-09 11:37:55] -rw------- 1 boinc boinc        95 Feb  9 11:37 pilot_heartbeat.json
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc        27 Feb  9 11:37 wrapper_checkpoint.txt
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc      8192 Feb  9 11:37 boinc_mmap_file
[2026-02-09 11:37:55] -rw------- 1 boinc boinc      5272 Feb  9 11:37 pilotlog.txt
[2026-02-09 11:37:55] -rw------- 1 boinc boinc   1048313 Feb  9 11:37 log.48442031._007077.job.log.1
[2026-02-09 11:37:55] -rw------- 1 boinc boinc       357 Feb  9 11:37 output.list
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc       620 Feb  9 11:37 runtime_log
[2026-02-09 11:37:55] -rw------- 1 boinc boinc   1341440 Feb  9 11:37 result.tar.gz
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc      8921 Feb  9 11:37 runtime_log.err
[2026-02-09 11:37:55] -rw------- 1 boinc boinc       662 Feb  9 11:37 FXpNDmh8N98n9Rq4apOajLDm4fhM0noT9bVooX4SDmKbdKDm6csPqn.diag
[2026-02-09 11:37:55] -rw-r--r-- 1 boinc boinc     11344 Feb  9 11:37 stderr.txt
[2026-02-09 11:37:55] HITS file was successfully produced:
[2026-02-09 11:37:55] -rw------- 1 boinc boinc 180634859 Feb  9 11:36 shared/HITS.pool.root.1
[2026-02-09 11:37:55]  *** Contents of shared directory: ***
[2026-02-09 11:37:55] total 656932
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc 490092922 Feb  9 09:35 ATLAS.root_0
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc    597960 Feb  9 09:35 input.tar.gz
[2026-02-09 11:37:55] -rw-r--r-- 2 boinc boinc     15845 Feb  9 09:35 start_atlas.sh
[2026-02-09 11:37:55] -rw------- 1 boinc boinc 180634859 Feb  9 11:36 HITS.pool.root.1
[2026-02-09 11:37:55] -rw------- 1 boinc boinc   1341440 Feb  9 11:37 result.tar.gz
11:37:57 (3320870): run_atlas exited; CPU time 14117.867635
11:37:57 (3320870): called boinc_finish(0)

</stderr_txt>
]]>

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