Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:24:51 (2361213): wrapper (7.7.26015): starting
10:24:51 (2361213): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 10:24:51] Arguments: --nthreads 3
[2026-02-09 10:24:51] Threads: 3
[2026-02-09 10:24:51] Checking for CVMFS
[2026-02-09 10:24:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 10:24:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 10:24:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 10:24:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 10:24:52] 2.9.2.0 1622115 4436 78132 156050 1 49 26317535 36864000 0 130560 0 1924625 99.984 159642 17251 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 10:24:52] CVMFS is ok
[2026-02-09 10:24:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 10:24:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 10:24:52] Further information can be found at the LHC@home message board.
[2026-02-09 10:24:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 10:24:52] Checking for apptainer binary...
[2026-02-09 10:24:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 10:24:52] Running /usr/bin/apptainer --version
[2026-02-09 10:24:52] apptainer version 1.4.1-1.1
[2026-02-09 10:24:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 10:24:52] magicA246a
[2026-02-09 10:24:52] apptainer works
[2026-02-09 10:24:52] Set ATHENA_PROC_NUMBER=3
[2026-02-09 10:24:52] Set ATHENA_CORE_NUMBER=3
[2026-02-09 10:24:52] Starting ATLAS job with PandaID=7005738438
[2026-02-09 10:24:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 12:25:15]  *** The last 200 lines of the pilot log: ***
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | job 7005738438 has completed (purged errors)
[2026-02-09 12:25:15] 2026-02-09 11:24:42,123 | INFO     | overall cleanup function is called
[2026-02-09 12:25:15] 2026-02-09 11:24:43,129 | INFO     | --- collectZombieJob: --- 10, [2369698]
[2026-02-09 12:25:15] 2026-02-09 11:24:43,130 | INFO     | zombie collector waiting for pid 2369698
[2026-02-09 12:25:15] 2026-02-09 11:24:43,130 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 12:25:15] 2026-02-09 11:24:43,130 | INFO     | collected zombie processes
[2026-02-09 12:25:15] 2026-02-09 11:24:43,130 | INFO     | will attempt to kill all subprocesses of pid=2369698
[2026-02-09 12:25:15] 2026-02-09 11:24:43,186 | INFO     | process IDs to be killed: [2369698] (in reverse order)
[2026-02-09 12:25:15] 2026-02-09 11:24:43,215 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 12:25:15] 2026-02-09 11:24:43,215 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 12:25:15] 2026-02-09 11:24:43,217 | INFO     | did not find any defunct processes belonging to 2369698
[2026-02-09 12:25:15] 2026-02-09 11:24:43,218 | INFO     | did not find any defunct processes belonging to 2369698
[2026-02-09 12:25:15] 2026-02-09 11:24:43,218 | INFO     | ready for new job
[2026-02-09 12:25:15] 2026-02-09 11:24:43,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 12:25:15] 2026-02-09 11:24:43,219 | INFO     | **************************************
[2026-02-09 12:25:15] 2026-02-09 11:24:43,219 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 12:25:15] 2026-02-09 11:24:43,219 | INFO     | **************************************
[2026-02-09 12:25:15] 2026-02-09 11:24:43,219 | INFO     | 
[2026-02-09 12:25:15] 2026-02-09 11:24:43,219 | INFO     | architecture information:
[2026-02-09 12:25:15] 2026-02-09 11:24:43,220 | INFO     | executing command: cat /etc/os-release
[2026-02-09 12:25:15] 2026-02-09 11:24:43,228 | INFO     | cat /etc/os-release:
[2026-02-09 12:25:15] NAME="CentOS Linux"
[2026-02-09 12:25:15] VERSION="7 (Core)"
[2026-02-09 12:25:15] ID="centos"
[2026-02-09 12:25:15] ID_LIKE="rhel fedora"
[2026-02-09 12:25:15] VERSION_ID="7"
[2026-02-09 12:25:15] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 12:25:15] ANSI_COLOR="0;31"
[2026-02-09 12:25:15] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 12:25:15] HOME_URL="https://www.centos.org/"
[2026-02-09 12:25:15] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 12:25:15] 
[2026-02-09 12:25:15] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 12:25:15] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 12:25:15] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 12:25:15] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 12:25:15] 
[2026-02-09 12:25:15] 2026-02-09 11:24:43,229 | INFO     | **************************************
[2026-02-09 12:25:15] 2026-02-09 11:24:43,732 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 12:25:15] 2026-02-09 11:24:43,744 | INFO     | sufficient remaining disk space (274195283968 B)
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | INFO     | update_server=False
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 12:25:15] 2026-02-09 11:24:43,745 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:25:15] 2026-02-09 11:24:43,752 | INFO     | all payload control threads have been joined
[2026-02-09 12:25:15] 2026-02-09 11:24:43,930 | INFO     | all job control threads have been joined
[2026-02-09 12:25:15] 2026-02-09 11:24:44,225 | INFO     | all data control threads have been joined
[2026-02-09 12:25:15] 2026-02-09 11:24:44,407 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 12:25:15] 2026-02-09 11:24:44,407 | INFO     | aborting loop
[2026-02-09 12:25:15] 2026-02-09 11:24:44,749 | INFO     | [job] retrieve thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:44,749 | INFO     | [job] queue monitor thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:44,757 | INFO     | [payload] control thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:44,841 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:44,907 | INFO     | [data] copytool_in thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:44,934 | INFO     | [job] control thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,231 | INFO     | [data] control thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,282 | INFO     | [payload] failed_post thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,307 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,413 | INFO     | [job] job monitor thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,751 | INFO     | [data] copytool_out thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:45,823 | INFO     | [payload] validate_post thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:46,099 | INFO     | [job] validate thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:46,193 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:47,196 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 12:25:15] 2026-02-09 11:24:51,202 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:54,079 | INFO     | job.realtimelogging is not enabled
[2026-02-09 12:25:15] 2026-02-09 11:24:55,085 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 12:25:15] 2026-02-09 11:24:58,121 [wrapper] supervise_pilot (15 min periods counter: 9)
[2026-02-09 12:25:15] 2026-02-09 11:25:08,586 | INFO     | [monitor] cgroup control has ended
[2026-02-09 12:25:15] 2026-02-09 11:25:10,441 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140410081965888)>', '<ExcThread(monitor, started 140409807587072)>']
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | INFO     | PID=2365249 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 12:25:15] 2026-02-09 11:25:14,070 | INFO     | [monitor] control thread has ended
[2026-02-09 12:25:15] 2026-02-09 11:25:15,466 | INFO     | all workflow threads have been joined
[2026-02-09 12:25:15] 2026-02-09 11:25:15,467 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 12:25:15] 2026-02-09 11:25:15,467 | INFO     | traces error code: 0
[2026-02-09 12:25:15] 2026-02-09 11:25:15,467 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 12:25:15] 2026-02-09 11:25:15,518 [wrapper] ==== pilot stdout END ====
[2026-02-09 12:25:15] 2026-02-09 11:25:15,520 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 12:25:15] 2026-02-09 11:25:15,523 [wrapper] pilotpid: 2365249
[2026-02-09 12:25:15] 2026-02-09 11:25:15,525 [wrapper] Pilot exit status: 0
[2026-02-09 12:25:15] 2026-02-09 11:25:15,532 [wrapper] pandaids: 7005738438
[2026-02-09 12:25:15] 2026-02-09 11:25:15,551 [wrapper] cleanup supervisor_pilot 2377646 2365250
[2026-02-09 12:25:15] 2026-02-09 11:25:15,554 [wrapper] Test setup, not cleaning
[2026-02-09 12:25:15] 2026-02-09 11:25:15,556 [wrapper] apfmon messages muted
[2026-02-09 12:25:15] 2026-02-09 11:25:15,559 [wrapper] ==== wrapper stdout END ====
[2026-02-09 12:25:15] 2026-02-09 11:25:15,561 [wrapper] ==== wrapper stderr END ====
[2026-02-09 12:25:15]  *** Error codes and diagnostics ***
[2026-02-09 12:25:15]     "exeErrorCode": 0,
[2026-02-09 12:25:15]     "exeErrorDiag": "",
[2026-02-09 12:25:15]     "pilotErrorCode": 0,
[2026-02-09 12:25:15]     "pilotErrorDiag": "",
[2026-02-09 12:25:15]  *** Listing of results directory ***
[2026-02-09 12:25:15] total 942564
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc    584627 Feb  8 18:49 pilot3.tar.gz
[2026-02-09 12:25:15] -rwx------ 1 boinc boinc     36322 Feb  8 18:50 runpilot2-wrapper.sh
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc      5111 Feb  8 18:53 queuedata.json
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc       100 Feb  9 10:24 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 12:25:15] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 10:24 run_atlas
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc       105 Feb  9 10:24 job.xml
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc 677686846 Feb  9 10:24 EVNT.48508760._000032.pool.root.1
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc    597947 Feb  9 10:24 input.tar.gz
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:24 start_atlas.sh
[2026-02-09 12:25:15] drwxrwx--x 2 boinc boinc      4096 Feb  9 10:24 shared
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:24 boinc_setup_complete
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc      6447 Feb  9 10:24 init_data.xml
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:24 boinc_lockfile
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc      2547 Feb  9 10:24 pandaJob.out
[2026-02-09 12:25:15] -rw------- 1 boinc boinc   1009488 Feb  9 10:24 agis_schedconf.cvmfs.json
[2026-02-09 12:25:15] -rw------- 1 boinc boinc   1513144 Feb  9 10:24 agis_ddmendpoints.agis.ALL.json
[2026-02-09 12:25:15] -rw------- 1 boinc boinc       428 Feb  9 10:25 workernode_map.json
[2026-02-09 12:25:15] drwx------ 5 boinc boinc      4096 Feb  9 10:25 pilot3
[2026-02-09 12:25:15] -rw------- 1 boinc boinc 280945216 Feb  9 12:24 HITS.48508763._001569.pool.root.1
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc       530 Feb  9 12:24 boinc_task_state.xml
[2026-02-09 12:25:15] -rw------- 1 boinc boinc      1016 Feb  9 12:24 memory_monitor_summary.json
[2026-02-09 12:25:15] -rw------- 1 boinc boinc        95 Feb  9 12:24 pilot_heartbeat.json
[2026-02-09 12:25:15] -rw------- 1 boinc boinc    280933 Feb  9 12:24 log.48508763._001569.job.log.tgz.1
[2026-02-09 12:25:15] -rw------- 1 boinc boinc      6308 Feb  9 12:24 heartbeat.json
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc        27 Feb  9 12:24 wrapper_checkpoint.txt
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc      8192 Feb  9 12:24 boinc_mmap_file
[2026-02-09 12:25:15] -rw------- 1 boinc boinc      4820 Feb  9 12:25 pilotlog.txt
[2026-02-09 12:25:15] -rw------- 1 boinc boinc   1031546 Feb  9 12:25 log.48508763._001569.job.log.1
[2026-02-09 12:25:15] -rw------- 1 boinc boinc       357 Feb  9 12:25 output.list
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc       620 Feb  9 12:25 runtime_log
[2026-02-09 12:25:15] -rw------- 1 boinc boinc   1331200 Feb  9 12:25 result.tar.gz
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc      8916 Feb  9 12:25 runtime_log.err
[2026-02-09 12:25:15] -rw------- 1 boinc boinc       661 Feb  9 12:25 aWqNDmx6N98n9Rq4apOajLDm4fhM0noT9bVooX4SDmHZdKDmyi224m.diag
[2026-02-09 12:25:15] -rw-r--r-- 1 boinc boinc     11511 Feb  9 12:25 stderr.txt
[2026-02-09 12:25:15] HITS file was successfully produced:
[2026-02-09 12:25:15] -rw------- 1 boinc boinc 280945216 Feb  9 12:24 shared/HITS.pool.root.1
[2026-02-09 12:25:15]  *** Contents of shared directory: ***
[2026-02-09 12:25:15] total 938076
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc 677686846 Feb  9 10:24 ATLAS.root_0
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc    597947 Feb  9 10:24 input.tar.gz
[2026-02-09 12:25:15] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:24 start_atlas.sh
[2026-02-09 12:25:15] -rw------- 1 boinc boinc 280945216 Feb  9 12:24 HITS.pool.root.1
[2026-02-09 12:25:15] -rw------- 1 boinc boinc   1331200 Feb  9 12:25 result.tar.gz
12:25:16 (2361213): run_atlas exited; CPU time 20862.700364
12:25:16 (2361213): called boinc_finish(0)

</stderr_txt>
]]>

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