Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:20:55 (3990132): wrapper (7.7.26015): starting
16:20:55 (3990132): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 16:20:55] Arguments: --nthreads 4
[2026-02-09 16:20:55] Threads: 4
[2026-02-09 16:20:55] Checking for CVMFS
[2026-02-09 16:20:55] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 16:20:56] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 16:20:56] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 16:20:56] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 16:20:56] 2.9.2.0 3088581 4731 92168 156054 2 188 36560413 36864000 0 130560 0 2586162 99.987 168010 13814 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 16:20:56] CVMFS is ok
[2026-02-09 16:20:56] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 16:20:56] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 16:20:56] Further information can be found at the LHC@home message board.
[2026-02-09 16:20:56] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 16:20:56] Checking for apptainer binary...
[2026-02-09 16:20:56] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 16:20:56] Running /usr/bin/apptainer --version
[2026-02-09 16:20:56] apptainer version 1.4.1-1.1
[2026-02-09 16:20:56] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 16:20:56] thA315b
[2026-02-09 16:20:56] apptainer works
[2026-02-09 16:20:56] Set ATHENA_PROC_NUMBER=4
[2026-02-09 16:20:56] Set ATHENA_CORE_NUMBER=4
[2026-02-09 16:20:56] Starting ATLAS job with PandaID=7005775658
[2026-02-09 16:20:56] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 17:24:17]  *** The last 200 lines of the pilot log: ***
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,266 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | job 7005775658 has completed (purged errors)
[2026-02-09 17:24:17] 2026-02-09 16:23:42,267 | INFO     | overall cleanup function is called
[2026-02-09 17:24:17] 2026-02-09 16:23:43,274 | INFO     | --- collectZombieJob: --- 10, [3998753]
[2026-02-09 17:24:17] 2026-02-09 16:23:43,274 | INFO     | zombie collector waiting for pid 3998753
[2026-02-09 17:24:17] 2026-02-09 16:23:43,274 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 17:24:17] 2026-02-09 16:23:43,274 | INFO     | collected zombie processes
[2026-02-09 17:24:17] 2026-02-09 16:23:43,274 | INFO     | will attempt to kill all subprocesses of pid=3998753
[2026-02-09 17:24:17] 2026-02-09 16:23:43,319 | INFO     | process IDs to be killed: [3998753] (in reverse order)
[2026-02-09 17:24:17] 2026-02-09 16:23:43,346 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 17:24:17] 2026-02-09 16:23:43,346 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 17:24:17] 2026-02-09 16:23:43,348 | INFO     | did not find any defunct processes belonging to 3998753
[2026-02-09 17:24:17] 2026-02-09 16:23:43,349 | INFO     | did not find any defunct processes belonging to 3998753
[2026-02-09 17:24:17] 2026-02-09 16:23:43,349 | INFO     | ready for new job
[2026-02-09 17:24:17] 2026-02-09 16:23:43,349 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 17:24:17] 2026-02-09 16:23:43,349 | INFO     | **************************************
[2026-02-09 17:24:17] 2026-02-09 16:23:43,350 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 17:24:17] 2026-02-09 16:23:43,350 | INFO     | **************************************
[2026-02-09 17:24:17] 2026-02-09 16:23:43,350 | INFO     | 
[2026-02-09 17:24:17] 2026-02-09 16:23:43,350 | INFO     | architecture information:
[2026-02-09 17:24:17] 2026-02-09 16:23:43,350 | INFO     | executing command: cat /etc/os-release
[2026-02-09 17:24:17] 2026-02-09 16:23:43,360 | INFO     | cat /etc/os-release:
[2026-02-09 17:24:17] NAME="CentOS Linux"
[2026-02-09 17:24:17] VERSION="7 (Core)"
[2026-02-09 17:24:17] ID="centos"
[2026-02-09 17:24:17] ID_LIKE="rhel fedora"
[2026-02-09 17:24:17] VERSION_ID="7"
[2026-02-09 17:24:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 17:24:17] ANSI_COLOR="0;31"
[2026-02-09 17:24:17] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 17:24:17] HOME_URL="https://www.centos.org/"
[2026-02-09 17:24:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 17:24:17] 
[2026-02-09 17:24:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 17:24:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 17:24:17] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 17:24:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 17:24:17] 
[2026-02-09 17:24:17] 2026-02-09 16:23:43,360 | INFO     | **************************************
[2026-02-09 17:24:17] 2026-02-09 16:23:43,862 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 17:24:17] 2026-02-09 16:23:43,876 | INFO     | sufficient remaining disk space (318564728832 B)
[2026-02-09 17:24:17] 2026-02-09 16:23:43,876 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 17:24:17] 2026-02-09 16:23:43,876 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 17:24:17] 2026-02-09 16:23:43,877 | INFO     | update_server=False
[2026-02-09 17:24:17] 2026-02-09 16:23:43,877 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 17:24:17] 2026-02-09 16:23:43,877 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 17:24:17] 2026-02-09 16:23:43,877 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 17:24:17] 2026-02-09 16:23:43,922 | INFO     | all job control threads have been joined
[2026-02-09 17:24:17] 2026-02-09 16:23:43,998 | INFO     | all payload control threads have been joined
[2026-02-09 17:24:17] 2026-02-09 16:23:44,262 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 17:24:17] 2026-02-09 16:23:44,262 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 17:24:17] 2026-02-09 16:23:44,263 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 17:24:17] 2026-02-09 16:23:44,263 | INFO     | will abort loop
[2026-02-09 17:24:17] 2026-02-09 16:23:44,305 | INFO     | all data control threads have been joined
[2026-02-09 17:24:17] 2026-02-09 16:23:44,882 | INFO     | [job] queue monitor thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:44,882 | INFO     | [job] retrieve thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:44,887 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:44,928 | INFO     | [job] control thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,004 | INFO     | [payload] control thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,005 | INFO     | [data] copytool_in thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,268 | INFO     | [job] job monitor thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,306 | INFO     | [data] control thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,400 | INFO     | [payload] failed_post thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,883 | INFO     | [data] copytool_out thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:45,993 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:46,262 | INFO     | [job] validate thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:46,321 | INFO     | [payload] validate_post thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:46,361 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:46,851 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 17:24:17] 2026-02-09 16:23:47,021 | INFO     | job.realtimelogging is not enabled
[2026-02-09 17:24:17] 2026-02-09 16:23:48,027 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:23:50,858 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 17:24:17] 2026-02-09 16:24:11,543 | INFO     | [monitor] cgroup control has ended
[2026-02-09 17:24:17] 2026-02-09 16:24:12,751 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314507310912)>', '<ExcThread(monitor, started 140314023028480)>']
[2026-02-09 17:24:17] 2026-02-09 16:24:14,610 | INFO     | PID=3994241 has CPU usage=1.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 17:24:17] 2026-02-09 16:24:14,611 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 17:24:17] 2026-02-09 16:24:14,611 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 17:24:17] 2026-02-09 16:24:14,611 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 17:24:17] 2026-02-09 16:24:14,611 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 17:24:17] 2026-02-09 16:24:14,611 | INFO     | [monitor] control thread has ended
[2026-02-09 17:24:17] 2026-02-09 16:24:17,760 | INFO     | all workflow threads have been joined
[2026-02-09 17:24:17] 2026-02-09 16:24:17,760 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 17:24:17] 2026-02-09 16:24:17,761 | INFO     | traces error code: 0
[2026-02-09 17:24:17] 2026-02-09 16:24:17,761 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 17:24:17] 2026-02-09 16:24:17,815 [wrapper] ==== pilot stdout END ====
[2026-02-09 17:24:17] 2026-02-09 16:24:17,818 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 17:24:17] 2026-02-09 16:24:17,821 [wrapper] pilotpid: 3994241
[2026-02-09 17:24:17] 2026-02-09 16:24:17,823 [wrapper] Pilot exit status: 0
[2026-02-09 17:24:17] 2026-02-09 16:24:17,831 [wrapper] pandaids: 7005775658
[2026-02-09 17:24:17] 2026-02-09 16:24:17,849 [wrapper] cleanup supervisor_pilot 4003669 3994242
[2026-02-09 17:24:17] 2026-02-09 16:24:17,852 [wrapper] Test setup, not cleaning
[2026-02-09 17:24:17] 2026-02-09 16:24:17,854 [wrapper] apfmon messages muted
[2026-02-09 17:24:17] 2026-02-09 16:24:17,857 [wrapper] ==== wrapper stdout END ====
[2026-02-09 17:24:17] 2026-02-09 16:24:17,859 [wrapper] ==== wrapper stderr END ====
[2026-02-09 17:24:17]  *** Error codes and diagnostics ***
[2026-02-09 17:24:17]     "exeErrorCode": 0,
[2026-02-09 17:24:17]     "exeErrorDiag": "",
[2026-02-09 17:24:17]     "pilotErrorCode": 0,
[2026-02-09 17:24:17]     "pilotErrorDiag": "",
[2026-02-09 17:24:17]  *** Listing of results directory ***
[2026-02-09 17:24:17] total 670440
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc    584627 Feb  8 22:52 pilot3.tar.gz
[2026-02-09 17:24:17] -rwx------ 1 boinc boinc     36322 Feb  8 22:56 runpilot2-wrapper.sh
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc      5111 Feb  8 22:59 queuedata.json
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc       100 Feb  9 16:20 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 17:24:17] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 16:20 run_atlas
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc       105 Feb  9 16:20 job.xml
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc 494401752 Feb  9 16:20 EVNT.48318008._000261.pool.root.1
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc    597948 Feb  9 16:20 input.tar.gz
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc     15845 Feb  9 16:20 start_atlas.sh
[2026-02-09 17:24:17] drwxrwx--x 2 boinc boinc      4096 Feb  9 16:20 shared
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc         0 Feb  9 16:20 boinc_setup_complete
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc      6443 Feb  9 16:20 init_data.xml
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc         0 Feb  9 16:20 boinc_lockfile
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc      2528 Feb  9 16:20 pandaJob.out
[2026-02-09 17:24:17] -rw------- 1 boinc boinc   1009480 Feb  9 16:21 agis_schedconf.cvmfs.json
[2026-02-09 17:24:17] -rw------- 1 boinc boinc   1513144 Feb  9 16:21 agis_ddmendpoints.agis.ALL.json
[2026-02-09 17:24:17] -rw------- 1 boinc boinc       418 Feb  9 16:21 workernode_map.json
[2026-02-09 17:24:17] drwx------ 5 boinc boinc      4096 Feb  9 16:21 pilot3
[2026-02-09 17:24:17] -rw------- 1 boinc boinc 186515177 Feb  9 17:23 HITS.48318010._014490.pool.root.1
[2026-02-09 17:24:17] -rw------- 1 boinc boinc        95 Feb  9 17:23 pilot_heartbeat.json
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc       530 Feb  9 17:23 boinc_task_state.xml
[2026-02-09 17:24:17] -rw------- 1 boinc boinc      1034 Feb  9 17:23 memory_monitor_summary.json
[2026-02-09 17:24:17] -rw------- 1 boinc boinc    275239 Feb  9 17:23 log.48318010._014490.job.log.tgz.1
[2026-02-09 17:24:17] -rw------- 1 boinc boinc      6303 Feb  9 17:23 heartbeat.json
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc      8192 Feb  9 17:24 boinc_mmap_file
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc        27 Feb  9 17:24 wrapper_checkpoint.txt
[2026-02-09 17:24:17] -rw------- 1 boinc boinc      5006 Feb  9 17:24 pilotlog.txt
[2026-02-09 17:24:17] -rw------- 1 boinc boinc    563774 Feb  9 17:24 log.48318010._014490.job.log.1
[2026-02-09 17:24:17] -rw------- 1 boinc boinc       357 Feb  9 17:24 output.list
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc       620 Feb  9 17:24 runtime_log
[2026-02-09 17:24:17] -rw------- 1 boinc boinc    860160 Feb  9 17:24 result.tar.gz
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc      8901 Feb  9 17:24 runtime_log.err
[2026-02-09 17:24:17] -rw------- 1 boinc boinc       658 Feb  9 17:24 0x7MDmNwR98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmYaeKDmwgz2To.diag
[2026-02-09 17:24:17] -rw-r--r-- 1 boinc boinc     12570 Feb  9 17:24 stderr.txt
[2026-02-09 17:24:17] HITS file was successfully produced:
[2026-02-09 17:24:17] -rw------- 1 boinc boinc 186515177 Feb  9 17:23 shared/HITS.pool.root.1
[2026-02-09 17:24:17]  *** Contents of shared directory: ***
[2026-02-09 17:24:17] total 666408
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc 494401752 Feb  9 16:20 ATLAS.root_0
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc    597948 Feb  9 16:20 input.tar.gz
[2026-02-09 17:24:17] -rw-r--r-- 2 boinc boinc     15845 Feb  9 16:20 start_atlas.sh
[2026-02-09 17:24:17] -rw------- 1 boinc boinc 186515177 Feb  9 17:23 HITS.pool.root.1
[2026-02-09 17:24:17] -rw------- 1 boinc boinc    860160 Feb  9 17:24 result.tar.gz
17:24:18 (3990132): run_atlas exited; CPU time 14068.668936
17:24:18 (3990132): called boinc_finish(0)

</stderr_txt>
]]>

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