Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
10:31:59 (793096): wrapper (7.7.26015): starting
10:31:59 (793096): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 10:31:59] Arguments: --nthreads 4
[2026-02-09 10:31:59] Threads: 4
[2026-02-09 10:31:59] Checking for CVMFS
[2026-02-09 10:31:59] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 10:31:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 10:31:59] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 10:31:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 10:31:59] 2.9.2.0 3021 4379 94460 156050 1 50 25044755 36864000 0 130560 0 2220064 99.987 159128 9799 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 10:31:59] CVMFS is ok
[2026-02-09 10:31:59] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 10:31:59] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 10:31:59] Further information can be found at the LHC@home message board.
[2026-02-09 10:31:59] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 10:31:59] Checking for apptainer binary...
[2026-02-09 10:31:59] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 10:31:59] Running /usr/bin/apptainer --version
[2026-02-09 10:31:59] apptainer version 1.4.1-1.1
[2026-02-09 10:31:59] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 10:31:59] thA334
[2026-02-09 10:31:59] apptainer works
[2026-02-09 10:31:59] Set ATHENA_PROC_NUMBER=4
[2026-02-09 10:31:59] Set ATHENA_CORE_NUMBER=4
[2026-02-09 10:31:59] Starting ATLAS job with PandaID=6994778814
[2026-02-09 10:31:59] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 11:46:23]  *** The last 200 lines of the pilot log: ***
[2026-02-09 11:46:23] 2026-02-09 10:45:16,742 | INFO     | did not find any defunct processes belonging to 801707
[2026-02-09 11:46:23] 2026-02-09 10:45:16,743 | INFO     | did not find any defunct processes belonging to 801707
[2026-02-09 11:46:23] 2026-02-09 10:45:16,743 | INFO     | ready for new job
[2026-02-09 11:46:23] 2026-02-09 10:45:16,743 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 11:46:23] 2026-02-09 10:45:16,744 | INFO     | **************************************
[2026-02-09 11:46:23] 2026-02-09 10:45:16,744 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-09 11:46:23] 2026-02-09 10:45:16,744 | INFO     | **************************************
[2026-02-09 11:46:23] 2026-02-09 10:45:16,744 | INFO     | 
[2026-02-09 11:46:23] 2026-02-09 10:45:16,745 | INFO     | architecture information:
[2026-02-09 11:46:23] 2026-02-09 10:45:16,745 | INFO     | executing command: cat /etc/os-release
[2026-02-09 11:46:23] 2026-02-09 10:45:16,758 | INFO     | cat /etc/os-release:
[2026-02-09 11:46:23] NAME="CentOS Linux"
[2026-02-09 11:46:23] VERSION="7 (Core)"
[2026-02-09 11:46:23] ID="centos"
[2026-02-09 11:46:23] ID_LIKE="rhel fedora"
[2026-02-09 11:46:23] VERSION_ID="7"
[2026-02-09 11:46:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 11:46:23] ANSI_COLOR="0;31"
[2026-02-09 11:46:23] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 11:46:23] HOME_URL="https://www.centos.org/"
[2026-02-09 11:46:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 11:46:23] 
[2026-02-09 11:46:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 11:46:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 11:46:23] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 11:46:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 11:46:23] 
[2026-02-09 11:46:23] 2026-02-09 10:45:16,758 | INFO     | **************************************
[2026-02-09 11:46:23] 2026-02-09 10:45:17,261 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 11:46:23] 2026-02-09 10:45:17,278 | INFO     | sufficient remaining disk space (230251560960 B)
[2026-02-09 11:46:23] 2026-02-09 10:45:17,278 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 11:46:23] 2026-02-09 10:45:17,278 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 11:46:23] 2026-02-09 10:45:17,278 | INFO     | update_server=False
[2026-02-09 11:46:23] 2026-02-09 10:45:17,279 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 11:46:23] 2026-02-09 10:45:17,279 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:46:23] 2026-02-09 10:45:17,279 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:46:23] 2026-02-09 10:45:17,279 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 11:46:23] 2026-02-09 10:45:17,279 | INFO     | will abort loop
[2026-02-09 11:46:23] 2026-02-09 10:45:17,506 | INFO     | all data control threads have been joined
[2026-02-09 11:46:23] 2026-02-09 10:45:18,211 | INFO     | all payload control threads have been joined
[2026-02-09 11:46:23] 2026-02-09 10:45:18,284 | INFO     | [job] retrieve thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,285 | INFO     | [job] queue monitor thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,285 | INFO     | [job] job monitor thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,512 | INFO     | [data] control thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,518 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 11:46:23] 2026-02-09 10:45:18,616 | INFO     | all job control threads have been joined
[2026-02-09 11:46:23] 2026-02-09 10:45:18,798 | INFO     | [job] validate thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,856 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:18,947 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,123 | INFO     | [data] copytool_in thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,124 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,217 | INFO     | [payload] control thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,358 | INFO     | [payload] validate_post thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,622 | INFO     | [job] control thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:19,877 | INFO     | [payload] failed_post thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:20,524 | INFO     | [data] copytool_out thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:21,286 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:27,846 | INFO     | job.realtimelogging is not enabled
[2026-02-09 11:46:23] 2026-02-09 10:45:28,851 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 11:46:23] 2026-02-09 10:45:47,573 | INFO     | PID=797201 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 11:46:23] 2026-02-09 10:45:47,574 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 11:46:23] 2026-02-09 10:45:47,574 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 11:46:23] 2026-02-09 10:45:47,574 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 11:46:23] 2026-02-09 10:46:16,172 | INFO     | [monitor] cgroup control has ended
[2026-02-09 11:46:23] 2026-02-09 10:46:18,266 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140520381097792)>', '<ExcThread(monitor, started 140519283865344)>']
[2026-02-09 11:46:23] 2026-02-09 10:46:18,736 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 11:46:23] 2026-02-09 10:46:18,736 | INFO     | [monitor] control thread has ended
[2026-02-09 11:46:23] 2026-02-09 10:46:23,291 | INFO     | all workflow threads have been joined
[2026-02-09 11:46:23] 2026-02-09 10:46:23,291 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 11:46:23] 2026-02-09 10:46:23,292 | INFO     | traces error code: 0
[2026-02-09 11:46:23] 2026-02-09 10:46:23,292 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 11:46:23] 2026-02-09 10:46:23,361 [wrapper] ==== pilot stdout END ====
[2026-02-09 11:46:23] 2026-02-09 10:46:23,365 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 11:46:23] 2026-02-09 10:46:23,368 [wrapper] pilotpid: 797201
[2026-02-09 11:46:23] 2026-02-09 10:46:23,372 [wrapper] Pilot exit status: 0
[2026-02-09 11:46:23] 2026-02-09 10:46:23,382 [wrapper] pandaids: 6994778814
[2026-02-09 11:46:23] 2026-02-09 10:46:23,404 [wrapper] cleanup supervisor_pilot  806760 797202
[2026-02-09 11:46:23] 2026-02-09 10:46:23,408 [wrapper] Test setup, not cleaning
[2026-02-09 11:46:23] 2026-02-09 10:46:23,412 [wrapper] apfmon messages muted
[2026-02-09 11:46:23] 2026-02-09 10:46:23,415 [wrapper] ==== wrapper stdout END ====
[2026-02-09 11:46:23] 2026-02-09 10:46:23,419 [wrapper] ==== wrapper stderr END ====
[2026-02-09 11:46:23]  *** Error codes and diagnostics ***
[2026-02-09 11:46:23]     "exeErrorCode": 0,
[2026-02-09 11:46:23]     "exeErrorDiag": "",
[2026-02-09 11:46:23]     "pilotErrorCode": 0,
[2026-02-09 11:46:23]     "pilotErrorDiag": "",
[2026-02-09 11:46:23]  *** Listing of results directory ***
[2026-02-09 11:46:23] total 674500
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      5111 Jan 31 17:04 queuedata.json
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc    584422 Jan 31 17:04 pilot3.tar.gz
[2026-02-09 11:46:23] -rwx------ 1 boinc boinc     36322 Jan 31 17:04 runpilot2-wrapper.sh
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc       100 Feb  9 10:31 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 11:46:23] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 10:31 run_atlas
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc       105 Feb  9 10:31 job.xml
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc 494063945 Feb  9 10:31 EVNT.48317869._000093.pool.root.1
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc    597764 Feb  9 10:31 input.tar.gz
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:31 start_atlas.sh
[2026-02-09 11:46:23] drwxrwx--x 2 boinc boinc      4096 Feb  9 10:31 shared
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:31 boinc_setup_complete
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      6369 Feb  9 10:31 init_data.xml
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc         0 Feb  9 10:31 boinc_lockfile
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      2517 Feb  9 10:31 pandaJob.out
[2026-02-09 11:46:23] -rw------- 1 boinc boinc   1009488 Feb  9 10:32 agis_schedconf.cvmfs.json
[2026-02-09 11:46:23] -rw------- 1 boinc boinc   1513144 Feb  9 10:32 agis_ddmendpoints.agis.ALL.json
[2026-02-09 11:46:23] -rw------- 1 boinc boinc       420 Feb  9 10:32 workernode_map.json
[2026-02-09 11:46:23] drwx------ 5 boinc boinc      4096 Feb  9 10:32 pilot3
[2026-02-09 11:46:23] -rw------- 1 boinc boinc 190824112 Feb  9 11:44 HITS.48317872._015359.pool.root.1
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc       530 Feb  9 11:45 boinc_task_state.xml
[2026-02-09 11:46:23] -rw------- 1 boinc boinc      1021 Feb  9 11:45 memory_monitor_summary.json
[2026-02-09 11:46:23] -rw------- 1 boinc boinc    283595 Feb  9 11:45 log.48317872._015359.job.log.tgz.1
[2026-02-09 11:46:23] -rw------- 1 boinc boinc      6309 Feb  9 11:45 heartbeat.json
[2026-02-09 11:46:23] -rw------- 1 boinc boinc        95 Feb  9 11:45 pilot_heartbeat.json
[2026-02-09 11:46:23] -rw------- 1 boinc boinc      4821 Feb  9 11:46 pilotlog.txt
[2026-02-09 11:46:23] -rw------- 1 boinc boinc    647646 Feb  9 11:46 log.48317872._015359.job.log.1
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      8192 Feb  9 11:46 boinc_mmap_file
[2026-02-09 11:46:23] -rw------- 1 boinc boinc       357 Feb  9 11:46 output.list
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc        27 Feb  9 11:46 wrapper_checkpoint.txt
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc       620 Feb  9 11:46 runtime_log
[2026-02-09 11:46:23] -rw------- 1 boinc boinc    952320 Feb  9 11:46 result.tar.gz
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      8896 Feb  9 11:46 runtime_log.err
[2026-02-09 11:46:23] -rw------- 1 boinc boinc       657 Feb  9 11:46 g5vNDmFdS68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmRCOKDmhD86an.diag
[2026-02-09 11:46:23] -rw-r--r-- 1 boinc boinc      9839 Feb  9 11:46 stderr.txt
[2026-02-09 11:46:23] HITS file was successfully produced:
[2026-02-09 11:46:23] -rw------- 1 boinc boinc 190824112 Feb  9 11:44 shared/HITS.pool.root.1
[2026-02-09 11:46:23]  *** Contents of shared directory: ***
[2026-02-09 11:46:23] total 670380
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc 494063945 Feb  9 10:31 ATLAS.root_0
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc    597764 Feb  9 10:31 input.tar.gz
[2026-02-09 11:46:23] -rw-r--r-- 2 boinc boinc     15845 Feb  9 10:31 start_atlas.sh
[2026-02-09 11:46:23] -rw------- 1 boinc boinc 190824112 Feb  9 11:44 HITS.pool.root.1
[2026-02-09 11:46:23] -rw------- 1 boinc boinc    952320 Feb  9 11:46 result.tar.gz
11:46:45 (793096): run_atlas exited; CPU time 16485.342979
11:46:45 (793096): called boinc_finish(0)

</stderr_txt>
]]>

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