Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:46:33 (1966729): wrapper (7.7.26015): starting
11:46:33 (1966729): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 11:46:33] Arguments: --nthreads 4
[2026-02-09 11:46:33] Threads: 4
[2026-02-09 11:46:33] Checking for CVMFS
[2026-02-09 11:46:33] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 11:46:34] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 11:46:34] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 11:46:34] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 11:46:34] 2.9.2.0 1089749 4650 100592 156052 3 50 24358473 36864000 0 130560 0 2318253 99.985 170142 10171 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 11:46:34] CVMFS is ok
[2026-02-09 11:46:34] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 11:46:34] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 11:46:34] Further information can be found at the LHC@home message board.
[2026-02-09 11:46:34] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 11:46:34] Checking for apptainer binary...
[2026-02-09 11:46:34] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 11:46:34] Running /usr/bin/apptainer --version
[2026-02-09 11:46:34] apptainer version 1.4.1-1.1
[2026-02-09 11:46:34] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 11:46:34] thA314
[2026-02-09 11:46:34] apptainer works
[2026-02-09 11:46:34] Set ATHENA_PROC_NUMBER=4
[2026-02-09 11:46:34] Set ATHENA_CORE_NUMBER=4
[2026-02-09 11:46:34] Starting ATLAS job with PandaID=7005399799
[2026-02-09 11:46:34] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 11:53:54]  *** The last 200 lines of the pilot log: ***
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | wrong length of table data, x=[1770634026.0, 1770634087.0, 1770634148.0, 1770634209.0, 1770634270.0], y=[29528.0, 1343928.0, 1446985.0, 2405161.0, 2382253.0] (must
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | could have reported an average CPU frequency of 3218 MHz (4 samples)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . Timing measurements:
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . get job = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . initial setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-in = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload execution = 272 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-out = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . log creation = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7005399799/pilotlog.txt
[2026-02-09 11:53:54] 2026-02-09 10:53:38,080 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2026-02-09 11:53:54] - Log from pilotlog.txt -
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7005399799/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | extracted standard info from prmon json
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | wrong length of table data, x=[1770634026.0, 1770634087.0, 1770634148.0, 1770634209.0, 1770634270.0], y=[29528.0, 1343928.0, 1446985.0, 2405161.0, 2382253.0] (must
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | could have reported an average CPU frequency of 3218 MHz (4 samples)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . Timing measurements:
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . get job = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . initial setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-in = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload execution = 272 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-out = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . log creation = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7005399799/pilotlog.txt
[2026-02-09 11:53:54] 2026-02-09 10:53:38,080 | WARNING  | 
[2026-02-09 11:53:54] [begin log extracts]
[2026-02-09 11:53:54] - Log from pilotlog.txt -
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | using path: /local/data/boinc/slots/0/PanDA_Pilot-7005399799/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | extracted standard info from prmon json
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | WARNING  | wrong length of table data, x=[1770634026.0, 1770634087.0, 1770634148.0, 1770634209.0, 1770634270.0], y=[29528.0, 1343928.0, 1446985.0, 2405161.0, 2382253.0] (must
[2026-02-09 11:53:54] 2026-02-09 10:53:38,061 | INFO     | could have reported an average CPU frequency of 3218 MHz (4 samples)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . Timing measurements:
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . get job = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . initial setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload setup = 4 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-in = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . payload execution = 272 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . stage-out = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | . log creation = 0 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | ..............................
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2026-02-09 11:53:54] 2026-02-09 10:53:38,062 | INFO     | executing command: tail -n 20 /local/data/boinc/slots/0/PanDA_Pilot-7005399799/pilotlog.txt
[2026-02-09 11:53:54] [end log extracts]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,080 | WARNING  | pilotErrorCodes = [1305] (will report primary/first error code)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,081 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a 
[2026-02-09 11:53:54] 2026-02-09 10:53:38,120 | INFO     | 
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | job summary report
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | --------------------------------------------------
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | PanDA job id: 7005399799
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | task id: 48310749
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | error 1/1: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2026-02-09 10:51:31,985 CRITICAL Transform executor raised TransformValidationExceptio
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | pilot state: failed 
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | transexitcode: 65
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | exeerrorcode: 65
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | exeerrordiag: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | exitcode: 65
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | exitmsg: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: "CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout."; P
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | cpuconsumptiontime: 163 s
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | nevents: 0
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | neventsw: 0
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | pid: 1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | pgrp: 1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | corecount: 4
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | event service: False
[2026-02-09 11:53:54] 2026-02-09 10:53:38,121 | INFO     | sizes: {0: 2283041, 11: 2283041, 280: 2309579, 281: 2313937, 284: 2313937, 400: 2314131}
[2026-02-09 11:53:54] 2026-02-09 10:53:38,122 | INFO     | --------------------------------------------------
[2026-02-09 11:53:54] 2026-02-09 10:53:38,122 | INFO     | 
[2026-02-09 11:53:54] 2026-02-09 10:53:38,122 | INFO     | executing command: ls -lF /local/data/boinc/slots/0
[2026-02-09 11:53:54] 2026-02-09 10:53:38,141 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | job 7005399799 has completed (purged errors)
[2026-02-09 11:53:54] 2026-02-09 10:53:38,142 | INFO     | overall cleanup function is called
[2026-02-09 11:53:54] 2026-02-09 10:53:39,149 | INFO     | --- collectZombieJob: --- 10, [1975395]
[2026-02-09 11:53:54] 2026-02-09 10:53:39,149 | INFO     | zombie collector waiting for pid 1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:39,149 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 11:53:54] 2026-02-09 10:53:39,149 | INFO     | collected zombie processes
[2026-02-09 11:53:54] 2026-02-09 10:53:39,149 | INFO     | will attempt to kill all subprocesses of pid=1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:39,199 | INFO     | process IDs to be killed: [1975395] (in reverse order)
[2026-02-09 11:53:54] 2026-02-09 10:53:39,236 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 11:53:54] 2026-02-09 10:53:39,237 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 11:53:54] 2026-02-09 10:53:39,238 | INFO     | did not find any defunct processes belonging to 1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:39,240 | INFO     | did not find any defunct processes belonging to 1975395
[2026-02-09 11:53:54] 2026-02-09 10:53:39,240 | INFO     | ready for new job
[2026-02-09 11:53:54] 2026-02-09 10:53:39,240 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 11:53:54] 2026-02-09 10:53:39,241 | INFO     | **************************************
[2026-02-09 11:53:54] 2026-02-09 10:53:39,241 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 11:53:54] 2026-02-09 10:53:39,241 | INFO     | **************************************
[2026-02-09 11:53:54] 2026-02-09 10:53:39,241 | INFO     | 
[2026-02-09 11:53:54] 2026-02-09 10:53:39,241 | INFO     | architecture information:
[2026-02-09 11:53:54] 2026-02-09 10:53:39,242 | INFO     | executing command: cat /etc/os-release
[2026-02-09 11:53:54] 2026-02-09 10:53:39,257 | INFO     | cat /etc/os-release:
[2026-02-09 11:53:54] NAME="CentOS Linux"
[2026-02-09 11:53:54] VERSION="7 (Core)"
[2026-02-09 11:53:54] ID="centos"
[2026-02-09 11:53:54] ID_LIKE="rhel fedora"
[2026-02-09 11:53:54] VERSION_ID="7"
[2026-02-09 11:53:54] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 11:53:54] ANSI_COLOR="0;31"
[2026-02-09 11:53:54] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 11:53:54] HOME_URL="https://www.centos.org/"
[2026-02-09 11:53:54] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 11:53:54] 
[2026-02-09 11:53:54] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 11:53:54] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 11:53:54] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 11:53:54] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 11:53:54] 
[2026-02-09 11:53:54] 2026-02-09 10:53:39,257 | INFO     | **************************************
[2026-02-09 11:53:54] 2026-02-09 10:53:39,760 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 11:53:54] 2026-02-09 10:53:39,779 | INFO     | sufficient remaining disk space (229758730240 B)
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | INFO     | update_server=False
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | INFO     | aborting loop
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 11:53:54] 2026-02-09 10:53:39,780 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 11:53:54] 2026-02-09 10:53:39,908 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 11:53:54] 2026-02-09 10:53:40,162 | INFO     | all data control threads have been joined
[2026-02-09 11:53:54] 2026-02-09 10:53:40,268 | INFO     | all job control threads have been joined
[2026-02-09 11:53:54] 2026-02-09 10:53:40,549 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 11:53:54] 2026-02-09 10:53:40,785 | INFO     | [job] queue monitor thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:40,786 | INFO     | [job] retrieve thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:40,786 | INFO     | [job] job monitor thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,167 | INFO     | [data] control thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,274 | INFO     | [job] control thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,286 | INFO     | all payload control threads have been joined
[2026-02-09 11:53:54] 2026-02-09 10:53:41,396 | INFO     | [payload] validate_post thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,435 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,560 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,626 | INFO     | [job] validate thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,732 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,802 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,914 | INFO     | [data] copytool_out thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,925 | INFO     | [payload] failed_post thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:41,946 | INFO     | [data] copytool_in thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:42,291 | INFO     | [payload] control thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:44,556 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 11:53:54] 2026-02-09 10:53:47,184 | INFO     | [monitor] cgroup control has ended
[2026-02-09 11:53:54] 2026-02-09 10:53:49,005 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140438408705856)>', '<ExcThread(monitor, started 140437595592448)>']
[2026-02-09 11:53:54] 2026-02-09 10:53:49,833 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 11:53:54] 2026-02-09 10:53:49,833 | INFO     | [monitor] control thread has ended
[2026-02-09 11:53:54] 2026-02-09 10:53:54,018 | INFO     | all workflow threads have been joined
[2026-02-09 11:53:54] 2026-02-09 10:53:54,018 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 11:53:54] 2026-02-09 10:53:54,018 | INFO     | traces error code: 0
[2026-02-09 11:53:54] 2026-02-09 10:53:54,018 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 11:53:54] 2026-02-09 10:53:54,093 [wrapper] ==== pilot stdout END ====
[2026-02-09 11:53:54] 2026-02-09 10:53:54,097 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 11:53:54] 2026-02-09 10:53:54,102 [wrapper] pilotpid: 1970845
[2026-02-09 11:53:54] 2026-02-09 10:53:54,106 [wrapper] Pilot exit status: 0
[2026-02-09 11:53:54] 2026-02-09 10:53:54,118 [wrapper] pandaids: 7005399799
[2026-02-09 11:53:54] 2026-02-09 10:53:54,143 [wrapper] cleanup supervisor_pilot 1970851 1970846
[2026-02-09 11:53:54] 2026-02-09 10:53:54,146 [wrapper] Test setup, not cleaning
[2026-02-09 11:53:54] 2026-02-09 10:53:54,151 [wrapper] apfmon messages muted
[2026-02-09 11:53:54] 2026-02-09 10:53:54,155 [wrapper] ==== wrapper stdout END ====
[2026-02-09 11:53:54] 2026-02-09 10:53:54,159 [wrapper] ==== wrapper stderr END ====
[2026-02-09 11:53:54]  *** Error codes and diagnostics ***
[2026-02-09 11:53:54]     "exeErrorCode": 65,
[2026-02-09 11:53:54]     "exeErrorDiag": "EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possible memory leak: 'pss' slope: 7442.04 KB/s",
[2026-02-09 11:53:54]     "pilotErrorCode": 1305,
[2026-02-09 11:53:54]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: EVNTtoHITS got a SIGHUP signal (exit code 129); Logfile error in log.EVNTtoHITS: \"CoreDumpSvc   FATAL Caught fatal signal. Printing details to stdout.\"; Possib",
[2026-02-09 11:53:54]  *** Listing of results directory ***
[2026-02-09 11:53:54] total 491272
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc    584627 Feb  8 15:16 pilot3.tar.gz
[2026-02-09 11:53:54] -rwx------ 1 boinc boinc     36322 Feb  8 15:19 runpilot2-wrapper.sh
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc      5111 Feb  8 15:23 queuedata.json
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc       100 Feb  9 11:46 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 11:53:54] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 11:46 run_atlas
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc       105 Feb  9 11:46 job.xml
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc 498651995 Feb  9 11:46 EVNT.48310747._000165.pool.root.1
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc    597949 Feb  9 11:46 input.tar.gz
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:46 start_atlas.sh
[2026-02-09 11:53:54] drwxrwx--x 2 boinc boinc      4096 Feb  9 11:46 shared
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:46 boinc_setup_complete
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc      6376 Feb  9 11:46 init_data.xml
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc         0 Feb  9 11:46 boinc_lockfile
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc      2523 Feb  9 11:46 pandaJob.out
[2026-02-09 11:53:54] -rw------- 1 boinc boinc   1009488 Feb  9 11:46 agis_schedconf.cvmfs.json
[2026-02-09 11:53:54] -rw------- 1 boinc boinc   1513144 Feb  9 11:46 agis_ddmendpoints.agis.ALL.json
[2026-02-09 11:53:54] -rw------- 1 boinc boinc       421 Feb  9 11:46 workernode_map.json
[2026-02-09 11:53:54] drwx------ 5 boinc boinc      4096 Feb  9 11:46 pilot3
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc       528 Feb  9 11:51 boinc_task_state.xml
[2026-02-09 11:53:54] -rw------- 1 boinc boinc      1003 Feb  9 11:51 memory_monitor_summary.json
[2026-02-09 11:53:54] -rw------- 1 boinc boinc    120845 Feb  9 11:51 log.48310749._008732.job.log.tgz.1
[2026-02-09 11:53:54] -rw------- 1 boinc boinc        95 Feb  9 11:52 pilot_heartbeat.json
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc        24 Feb  9 11:53 wrapper_checkpoint.txt
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc      8192 Feb  9 11:53 boinc_mmap_file
[2026-02-09 11:53:54] -rw------- 1 boinc boinc      8082 Feb  9 11:53 heartbeat.json
[2026-02-09 11:53:54] -rw------- 1 boinc boinc      4552 Feb  9 11:53 pilotlog.txt
[2026-02-09 11:53:54] -rw------- 1 boinc boinc    113367 Feb  9 11:53 log.48310749._008732.job.log.1
[2026-02-09 11:53:54] -rw------- 1 boinc boinc       188 Feb  9 11:53 output.list
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc       620 Feb  9 11:53 runtime_log
[2026-02-09 11:53:54] -rw------- 1 boinc boinc    256000 Feb  9 11:53 result.tar.gz
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc      8743 Feb  9 11:53 runtime_log.err
[2026-02-09 11:53:54] -rw------- 1 boinc boinc       650 Feb  9 11:53 An7LDmOoK98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmnvdKDmshaQIo.diag
[2026-02-09 11:53:54] -rw-r--r-- 1 boinc boinc     22450 Feb  9 11:53 stderr.txt
[2026-02-09 11:53:54] No HITS result produced
[2026-02-09 11:53:54]  *** Contents of shared directory: ***
[2026-02-09 11:53:54] total 487824
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc 498651995 Feb  9 11:46 ATLAS.root_0
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc    597949 Feb  9 11:46 input.tar.gz
[2026-02-09 11:53:54] -rw-r--r-- 2 boinc boinc     15845 Feb  9 11:46 start_atlas.sh
[2026-02-09 11:53:54] -rw------- 1 boinc boinc    256000 Feb  9 11:53 result.tar.gz
11:53:55 (1966729): run_atlas exited; CPU time 156.736250
11:53:55 (1966729): called boinc_finish(0)

</stderr_txt>
]]>

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