Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
03:25:31 (82326): wrapper (7.7.26015): starting
03:25:31 (82326): wrapper: running run_atlas (--nthreads 12)
[2026-02-09 03:25:31] Arguments: --nthreads 12
[2026-02-09 03:25:31] Threads: 12
[2026-02-09 03:25:31] Checking for CVMFS
[2026-02-09 03:25:31] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 03:25:31] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 03:25:31] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 03:25:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 03:25:31] 2.13.3.0 4372 3976 89772 156040 1 188 28630563 46080000 878 130560 0 6739788 99.995 149363 532 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2026-02-09 03:25:31] CVMFS is ok
[2026-02-09 03:25:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 03:25:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 03:25:31] Further information can be found at the LHC@home message board.
[2026-02-09 03:25:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 03:25:31] Checking for apptainer binary...
[2026-02-09 03:25:31] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 03:25:31] Running /usr/bin/apptainer --version
[2026-02-09 03:25:31] apptainer version 1.4.5-2.el9
[2026-02-09 03:25:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 03:25:31] gpu01.farm.particle.cz
[2026-02-09 03:25:31] apptainer works
[2026-02-09 03:25:31] Set ATHENA_PROC_NUMBER=12
[2026-02-09 03:25:31] Set ATHENA_CORE_NUMBER=12
[2026-02-09 03:25:31] Starting ATLAS job with PandaID=7004652336
[2026-02-09 03:25:31] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 04:08:56]  *** The last 200 lines of the pilot log: ***
[2026-02-09 04:08:56]  is_altstaged=None
[2026-02-09 04:08:56]  is_tar=False
[2026-02-09 04:08:56]  lfn=log.48318034._011942.job.log.tgz.1
[2026-02-09 04:08:56]  mtime=0
[2026-02-09 04:08:56]  protocol_id=None
[2026-02-09 04:08:56]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-09 04:08:56]  replicas=None
[2026-02-09 04:08:56]  scope=mc23_13p6TeV
[2026-02-09 04:08:56]  status=None
[2026-02-09 04:08:56]  status_code=0
[2026-02-09 04:08:56]  storage_token=
[2026-02-09 04:08:56]  surl=/var/lib/boinc/slots/1/PanDA_Pilot-7004652336/log.48318034._011942.job.log.tgz.1
[2026-02-09 04:08:56]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/e4/log.48318034._011942.job.log.tgz.1
[2026-02-09 04:08:56]  workdir=None
[2026-02-09 04:08:56] ]
[2026-02-09 04:08:56] 2026-02-09 03:08:18,974 | INFO     | transferring file log.48318034._011942.job.log.tgz.1 from /var/lib/boinc/slots/1/PanDA_Pilot-7004652336/log.48318034._011942.job.log.tgz.1 to /var/lib/boinc/slots/
[2026-02-09 04:08:56] 2026-02-09 03:08:18,974 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc/slots/1/PanDA_Pilot-7004652336/log.48318034._011942.job.log.tgz.1 /var/lib/boinc/slots/1/log.48318034._011942.job
[2026-02-09 04:08:56] 2026-02-09 03:08:18,989 | INFO     | adding to output.list: log.48318034._011942.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/74/e4/log.48318034._011942.job.log.tg
[2026-02-09 04:08:56] 2026-02-09 03:08:18,990 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-09 04:08:56] 2026-02-09 03:08:18,990 | INFO     | summary of transferred files:
[2026-02-09 04:08:56] 2026-02-09 03:08:18,990 | INFO     |  -- lfn=log.48318034._011942.job.log.tgz.1, status_code=0, status=transferred
[2026-02-09 04:08:56] 2026-02-09 03:08:18,990 | INFO     | stage-out finished correctly
[2026-02-09 04:08:56] 2026-02-09 03:08:19,600 | INFO     | time since job start (2558s) is within the limit (349056.0s)
[2026-02-09 04:08:56] 2026-02-09 03:08:19,964 | INFO     | monitor loop #197: job 0:7004652336 is in state 'finished'
[2026-02-09 04:08:56] 2026-02-09 03:08:19,964 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-09 04:08:56] 2026-02-09 03:08:21,605 | INFO     | time since job start (2560s) is within the limit (349056.0s)
[2026-02-09 04:08:56] 2026-02-09 03:08:22,042 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-09 04:08:56] 2026-02-09 03:08:22,467 | INFO     | monitor loop #198: job 0:7004652336 is in state 'finished'
[2026-02-09 04:08:56] 2026-02-09 03:08:22,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-09 04:08:56] 2026-02-09 03:08:23,610 | INFO     | time since job start (2562s) is within the limit (349056.0s)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,100 | INFO     | job 7004652336 has state=finished
[2026-02-09 04:08:56] 2026-02-09 03:08:24,100 | INFO     | preparing for final server update for job 7004652336 in state='finished'
[2026-02-09 04:08:56] 2026-02-09 03:08:24,101 | INFO     | reading metadata from: /var/lib/boinc/slots/1/PanDA_Pilot-7004652336/jobReport.json
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | added worker_node to metadata from /var/lib/boinc/slots/1/workernode_map.json
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | this job has now completed (state=finished)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | log transfer has been attempted: DONE
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | job 7004652336 has finished - writing final server update
[2026-02-09 04:08:56] 2026-02-09 03:08:24,102 | INFO     | total number of processed events: 400 (read)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,106 | INFO     | using path: /var/lib/boinc/slots/1/PanDA_Pilot-7004652336/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,106 | INFO     | extracted standard info from prmon json
[2026-02-09 04:08:56] 2026-02-09 03:08:24,106 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 04:08:56] 2026-02-09 03:08:24,106 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | INFO     | fitting pss+swap vs Time
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | INFO     | sum of square deviations: 13283970.0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | INFO     | sum of deviations: 551608726.0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | INFO     | mean x: 1770605301.0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,107 | INFO     | mean y: 2925014.2
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | intersect: -73520376704.59766
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | chi2: 0.0057874237588645145
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | current memory leak: 41.52 B/s (using 35 data points, chi2=0.01)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | could have reported an average CPU frequency of 3163 MHz (5 samples)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | ..............................
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . Timing measurements:
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . get job = 0 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . initial setup = 4 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . payload setup = 3 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . stage-in = 0 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . payload execution = 2538 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . stage-out = 0 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | . log creation = 0 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,108 | INFO     | ..............................
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | 
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | job summary report
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | --------------------------------------------------
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | PanDA job id: 7004652336
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | task id: 48318034
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | errors: (none)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | pilot state: finished 
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | transexitcode: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,160 | INFO     | exeerrorcode: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | exeerrordiag: 
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | exitcode: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | exitmsg: OK
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | cpuconsumptiontime: 27544 s
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | nevents: 400
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | neventsw: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | pid: 90800
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | pgrp: 90800
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | corecount: 12
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | event service: False
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | sizes: {0: 2282794, 1: 2283000, 11: 2283028, 2545: 2308284, 2546: 2317282, 2549: 2317338, 2551: 2317692}
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | --------------------------------------------------
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | 
[2026-02-09 04:08:56] 2026-02-09 03:08:24,161 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,179 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | job 7004652336 has completed (purged errors)
[2026-02-09 04:08:56] 2026-02-09 03:08:24,180 | INFO     | overall cleanup function is called
[2026-02-09 04:08:56] 2026-02-09 03:08:25,188 | INFO     | --- collectZombieJob: --- 10, [90800]
[2026-02-09 04:08:56] 2026-02-09 03:08:25,188 | INFO     | zombie collector waiting for pid 90800
[2026-02-09 04:08:56] 2026-02-09 03:08:25,191 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 04:08:56] 2026-02-09 03:08:25,191 | INFO     | collected zombie processes
[2026-02-09 04:08:56] 2026-02-09 03:08:25,191 | INFO     | will attempt to kill all subprocesses of pid=90800
[2026-02-09 04:08:56] 2026-02-09 03:08:25,322 | INFO     | process IDs to be killed: [90800] (in reverse order)
[2026-02-09 04:08:56] 2026-02-09 03:08:25,363 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 04:08:56] 2026-02-09 03:08:25,363 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 04:08:56] 2026-02-09 03:08:25,368 | INFO     | did not find any defunct processes belonging to 90800
[2026-02-09 04:08:56] 2026-02-09 03:08:25,371 | INFO     | did not find any defunct processes belonging to 90800
[2026-02-09 04:08:56] 2026-02-09 03:08:25,372 | INFO     | ready for new job
[2026-02-09 04:08:56] 2026-02-09 03:08:25,372 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 04:08:56] 2026-02-09 03:08:25,373 | INFO     | **************************************
[2026-02-09 04:08:56] 2026-02-09 03:08:25,373 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 04:08:56] 2026-02-09 03:08:25,373 | INFO     | **************************************
[2026-02-09 04:08:56] 2026-02-09 03:08:25,373 | INFO     | 
[2026-02-09 04:08:56] 2026-02-09 03:08:25,375 | INFO     | architecture information:
[2026-02-09 04:08:56] 2026-02-09 03:08:25,375 | INFO     | executing command: cat /etc/os-release
[2026-02-09 04:08:56] 2026-02-09 03:08:25,387 | INFO     | cat /etc/os-release:
[2026-02-09 04:08:56] NAME="CentOS Linux"
[2026-02-09 04:08:56] VERSION="7 (Core)"
[2026-02-09 04:08:56] ID="centos"
[2026-02-09 04:08:56] ID_LIKE="rhel fedora"
[2026-02-09 04:08:56] VERSION_ID="7"
[2026-02-09 04:08:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 04:08:56] ANSI_COLOR="0;31"
[2026-02-09 04:08:56] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 04:08:56] HOME_URL="https://www.centos.org/"
[2026-02-09 04:08:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 04:08:56] 
[2026-02-09 04:08:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 04:08:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 04:08:56] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 04:08:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 04:08:56] 
[2026-02-09 04:08:56] 2026-02-09 03:08:25,388 | INFO     | **************************************
[2026-02-09 04:08:56] 2026-02-09 03:08:25,890 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2026-02-09 04:08:56] 2026-02-09 03:08:25,905 | INFO     | sufficient remaining disk space (40100691968 B)
[2026-02-09 04:08:56] 2026-02-09 03:08:25,905 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 04:08:56] 2026-02-09 03:08:25,905 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 04:08:56] 2026-02-09 03:08:25,905 | INFO     | update_server=False
[2026-02-09 04:08:56] 2026-02-09 03:08:25,906 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 04:08:56] 2026-02-09 03:08:25,906 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 04:08:56] 2026-02-09 03:08:25,948 | INFO     | all payload control threads have been joined
[2026-02-09 04:08:56] 2026-02-09 03:08:25,975 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 04:08:56] 2026-02-09 03:08:25,975 | INFO     | aborting loop
[2026-02-09 04:08:56] 2026-02-09 03:08:26,173 | INFO     | all data control threads have been joined
[2026-02-09 04:08:56] 2026-02-09 03:08:26,908 | INFO     | [job] retrieve thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:26,911 | INFO     | [job] queue monitor thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:26,920 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:26,953 | INFO     | [payload] control thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:26,980 | INFO     | [job] job monitor thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:27,002 | INFO     | all job control threads have been joined
[2026-02-09 04:08:56] 2026-02-09 03:08:27,026 | INFO     | [data] copytool_in thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:27,070 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 04:08:56] 2026-02-09 03:08:27,179 | INFO     | [data] control thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:27,689 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:27,963 | INFO     | [payload] failed_post thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:28,008 | INFO     | [job] control thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:28,100 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 04:08:56] 2026-02-09 03:08:28,177 | INFO     | [job] validate thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:28,366 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:28,503 | INFO     | [payload] validate_post thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:29,075 | INFO     | [data] copytool_out thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:32,105 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:36,361 | INFO     | job.realtimelogging is not enabled
[2026-02-09 04:08:56] 2026-02-09 03:08:37,366 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 04:08:56] 2026-02-09 03:08:45,388 | INFO     | [monitor] cgroup control has ended
[2026-02-09 04:08:56] 2026-02-09 03:08:46,796 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140217297536832)>', '<ExcThread(monitor, started 140216950040320)>']
[2026-02-09 04:08:56] 2026-02-09 03:08:51,822 | INFO     | all workflow threads have been joined
[2026-02-09 04:08:56] 2026-02-09 03:08:51,822 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 04:08:56] 2026-02-09 03:08:51,822 | INFO     | traces error code: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:51,822 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 04:08:56] 2026-02-09 03:08:56,799 | INFO     | PID=86212 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 04:08:56] 2026-02-09 03:08:56,799 | INFO     | .. there are 2 such processes running
[2026-02-09 04:08:56] 2026-02-09 03:08:56,800 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 04:08:56] 2026-02-09 03:08:56,800 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 04:08:56] 2026-02-09 03:08:56,800 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 04:08:56] 2026-02-09 03:08:56,800 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 04:08:56] 2026-02-09 03:08:56,800 | INFO     | [monitor] control thread has ended
[2026-02-09 04:08:56] 2026-02-09 03:08:56,890 [wrapper] ==== pilot stdout END ====
[2026-02-09 04:08:56] 2026-02-09 03:08:56,892 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 04:08:56] 2026-02-09 03:08:56,894 [wrapper] pilotpid: 86212
[2026-02-09 04:08:56] 2026-02-09 03:08:56,896 [wrapper] Pilot exit status: 0
[2026-02-09 04:08:56] 2026-02-09 03:08:56,904 [wrapper] pandaids: 7004652336
[2026-02-09 04:08:56] 2026-02-09 03:08:56,930 [wrapper] cleanup supervisor_pilot  111560 86213
[2026-02-09 04:08:56] 2026-02-09 03:08:56,933 [wrapper] Test setup, not cleaning
[2026-02-09 04:08:56] 2026-02-09 03:08:56,934 [wrapper] apfmon messages muted
[2026-02-09 04:08:56] 2026-02-09 03:08:56,936 [wrapper] ==== wrapper stdout END ====
[2026-02-09 04:08:56] 2026-02-09 03:08:56,938 [wrapper] ==== wrapper stderr END ====
[2026-02-09 04:08:56]  *** Error codes and diagnostics ***
[2026-02-09 04:08:56]     "exeErrorCode": 0,
[2026-02-09 04:08:56]     "exeErrorDiag": "",
[2026-02-09 04:08:56]     "pilotErrorCode": 0,
[2026-02-09 04:08:56]     "pilotErrorDiag": "",
[2026-02-09 04:08:56]  *** Listing of results directory ***
[2026-02-09 04:08:56] total 667948
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc    584627 Feb  8 10:40 pilot3.tar.gz
[2026-02-09 04:08:56] -rwx------ 1 boinc boinc     36322 Feb  8 10:44 runpilot2-wrapper.sh
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc      5111 Feb  8 10:47 queuedata.json
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc       100 Feb  9 03:25 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 04:08:56] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 03:25 run_atlas
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc       105 Feb  9 03:25 job.xml
[2026-02-09 04:08:56] -rw-r--r-- 2 boinc boinc 494726479 Feb  9 03:25 EVNT.48318032._000132.pool.root.1
[2026-02-09 04:08:56] -rw-r--r-- 2 boinc boinc    597969 Feb  9 03:25 input.tar.gz
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc      9457 Feb  9 03:25 init_data.xml
[2026-02-09 04:08:56] -rw-r--r-- 2 boinc boinc     15845 Feb  9 03:25 start_atlas.sh
[2026-02-09 04:08:56] drwxrwx--x 2 boinc boinc      4096 Feb  9 03:25 shared
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc         0 Feb  9 03:25 boinc_lockfile
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc      2535 Feb  9 03:25 pandaJob.out
[2026-02-09 04:08:56] -rw------- 1 boinc boinc   1009504 Feb  9 03:25 agis_schedconf.cvmfs.json
[2026-02-09 04:08:56] -rw------- 1 boinc boinc   1513088 Feb  9 03:25 agis_ddmendpoints.agis.ALL.json
[2026-02-09 04:08:56] -rw------- 1 boinc boinc       428 Feb  9 03:25 workernode_map.json
[2026-02-09 04:08:56] drwx------ 5 boinc boinc      4096 Feb  9 03:25 pilot3
[2026-02-09 04:08:56] -rw------- 1 boinc boinc 183796848 Feb  9 04:07 HITS.48318034._011942.pool.root.1
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc       530 Feb  9 04:08 boinc_task_state.xml
[2026-02-09 04:08:56] -rw------- 1 boinc boinc        95 Feb  9 04:08 pilot_heartbeat.json
[2026-02-09 04:08:56] -rw------- 1 boinc boinc      1014 Feb  9 04:08 memory_monitor_summary.json
[2026-02-09 04:08:56] -rw------- 1 boinc boinc    351288 Feb  9 04:08 log.48318034._011942.job.log.tgz.1
[2026-02-09 04:08:56] -rw------- 1 boinc boinc      6316 Feb  9 04:08 heartbeat.json
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc      8192 Feb  9 04:08 boinc_mmap_file
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc        27 Feb  9 04:08 wrapper_checkpoint.txt
[2026-02-09 04:08:56] -rw------- 1 boinc boinc       820 Feb  9 04:08 pilotlog.txt
[2026-02-09 04:08:56] -rw------- 1 boinc boinc    404904 Feb  9 04:08 log.48318034._011942.job.log.1
[2026-02-09 04:08:56] -rw------- 1 boinc boinc       357 Feb  9 04:08 output.list
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc       620 Feb  9 04:08 runtime_log
[2026-02-09 04:08:56] -rw------- 1 boinc boinc    778240 Feb  9 04:08 result.tar.gz
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc      8853 Feb  9 04:08 runtime_log.err
[2026-02-09 04:08:56] -rw------- 1 boinc boinc       656 Feb  9 04:08 48TNDmyVG98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmsUdKDmheWqVm.diag
[2026-02-09 04:08:56] -rw-r--r-- 1 boinc boinc     21449 Feb  9 04:08 stderr.txt
[2026-02-09 04:08:57] HITS file was successfully produced:
[2026-02-09 04:08:57] -rw------- 1 boinc boinc 183796848 Feb  9 04:07 shared/HITS.pool.root.1
[2026-02-09 04:08:57]  *** Contents of shared directory: ***
[2026-02-09 04:08:57] total 663992
[2026-02-09 04:08:57] -rw-r--r-- 2 boinc boinc 494726479 Feb  9 03:25 ATLAS.root_0
[2026-02-09 04:08:57] -rw-r--r-- 2 boinc boinc    597969 Feb  9 03:25 input.tar.gz
[2026-02-09 04:08:57] -rw-r--r-- 2 boinc boinc     15845 Feb  9 03:25 start_atlas.sh
[2026-02-09 04:08:57] -rw------- 1 boinc boinc 183796848 Feb  9 04:07 HITS.pool.root.1
[2026-02-09 04:08:57] -rw------- 1 boinc boinc    778240 Feb  9 04:08 result.tar.gz
04:08:58 (82326): run_atlas exited; CPU time 27561.722918
04:08:58 (82326): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN