Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
00:33:52 (9848): wrapper (7.7.26015): starting
00:33:52 (9848): wrapper: running run_atlas (--nthreads 8)
[2026-02-09 00:33:52] Arguments: --nthreads 8
[2026-02-09 00:33:52] Threads: 8
[2026-02-09 00:33:52] Checking for CVMFS
[2026-02-09 00:33:52] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 00:33:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 00:33:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 00:33:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 00:33:53] 2.11.0.0 4361 172768 74700 156037 0 188 2306741 4096000 2751 130560 3 4383625 99.017 10225745 450 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-09 00:33:53] CVMFS is ok
[2026-02-09 00:33:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 00:33:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 00:33:53] Further information can be found at the LHC@home message board.
[2026-02-09 00:33:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 00:33:53] Checking for apptainer binary...
[2026-02-09 00:33:53] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-09 00:33:53] apptainer is not installed, using version from CVMFS
[2026-02-09 00:33:53] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 00:33:53] WARNING: Environment variable TMPDIR already has value [/tmp/job_11084007/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node391
[2026-02-09 00:33:53] apptainer works
[2026-02-09 00:33:53] Set ATHENA_PROC_NUMBER=8
[2026-02-09 00:33:53] Set ATHENA_CORE_NUMBER=8
[2026-02-09 00:33:53] Starting ATLAS job with PandaID=7004653696
[2026-02-09 00:33:53] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11084007/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 01:23:08]  *** The last 200 lines of the pilot log: ***
[2026-02-09 01:23:08]  replicas=None
[2026-02-09 01:23:08]  scope=mc23_13p6TeV
[2026-02-09 01:23:08]  status=None
[2026-02-09 01:23:08]  status_code=0
[2026-02-09 01:23:08]  storage_token=
[2026-02-09 01:23:08]  surl=/tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/log.48318034._012364.job.log.tgz.1
[2026-02-09 01:23:08]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/2b/log.48318034._012364.job.log.tgz.1
[2026-02-09 01:23:08]  workdir=None
[2026-02-09 01:23:08] ]
[2026-02-09 01:23:08] 2026-02-09 00:22:17,555 | INFO     | transferring file log.48318034._012364.job.log.tgz.1 from /tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/log.48318034._012364.job.log.tgz.1 to /tmp/j
[2026-02-09 01:23:08] 2026-02-09 00:22:17,555 | INFO     | executing command: /usr/bin/env mv /tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/log.48318034._012364.job.log.tgz.1 /tmp/job_11084007/atlas/pilot/sl
[2026-02-09 01:23:08] 2026-02-09 00:22:17,563 | INFO     | adding to output.list: log.48318034._012364.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fe/2b/log.48318034._012364.job.log.tg
[2026-02-09 01:23:08] 2026-02-09 00:22:17,563 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-09 01:23:08] 2026-02-09 00:22:17,563 | INFO     | summary of transferred files:
[2026-02-09 01:23:08] 2026-02-09 00:22:17,564 | INFO     |  -- lfn=log.48318034._012364.job.log.tgz.1, status_code=0, status=transferred
[2026-02-09 01:23:08] 2026-02-09 00:22:17,564 | INFO     | stage-out finished correctly
[2026-02-09 01:23:08] 2026-02-09 00:22:18,889 | INFO     | time since job start (2899s) is within the limit (349056.0s)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,023 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-09 01:23:08] 2026-02-09 00:22:20,815 | INFO     | job 7004653696 has state=finished
[2026-02-09 01:23:08] 2026-02-09 00:22:20,815 | INFO     | preparing for final server update for job 7004653696 in state='finished'
[2026-02-09 01:23:08] 2026-02-09 00:22:20,815 | INFO     | reading metadata from: /tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/jobReport.json
[2026-02-09 01:23:08] 2026-02-09 00:22:20,816 | INFO     | added worker_node to metadata from /tmp/job_11084007/atlas/pilot/slots/0/workernode_map.json
[2026-02-09 01:23:08] 2026-02-09 00:22:20,817 | INFO     | this job has now completed (state=finished)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,817 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,817 | INFO     | log transfer has been attempted: DONE
[2026-02-09 01:23:08] 2026-02-09 00:22:20,817 | INFO     | job 7004653696 has finished - writing final server update
[2026-02-09 01:23:08] 2026-02-09 00:22:20,817 | INFO     | total number of processed events: 400 (read)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | INFO     | using path: /tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | INFO     | extracted standard info from prmon json
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 01:23:08] 2026-02-09 00:22:20,834 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | fitting pss+swap vs Time
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | sum of square deviations: 21358540.0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | sum of deviations: -406881102.0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | mean x: 1770595179.0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | mean y: 2584520.463414634
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | intersect: 33732498532.723015
[2026-02-09 01:23:08] 2026-02-09 00:22:20,835 | INFO     | chi2: 0.0021010991828246182
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | current memory leak: -19.05 B/s (using 41 data points, chi2=0.00)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | could have reported an average CPU frequency of 2708 MHz (5 samples)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | ..............................
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . Timing measurements:
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . get job = 0 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . initial setup = 2 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . payload setup = 2 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . stage-in = 0 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . payload execution = 2881 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . stage-out = 0 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | . log creation = 0 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,836 | INFO     | ..............................
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | 
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | job summary report
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | --------------------------------------------------
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | PanDA job id: 7004653696
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | task id: 48318034
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | errors: (none)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | pilot state: finished 
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | transexitcode: 0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | exeerrorcode: 0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | exeerrordiag: 
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | exitcode: 0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | exitmsg: OK
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | cpuconsumptiontime: 20929 s
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | nevents: 400
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | neventsw: 0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | pid: 20484
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | pgrp: 20484
[2026-02-09 01:23:08] 2026-02-09 00:22:20,884 | INFO     | corecount: 8
[2026-02-09 01:23:08] 2026-02-09 00:22:20,885 | INFO     | event service: False
[2026-02-09 01:23:08] 2026-02-09 00:22:20,885 | INFO     | sizes: {0: 2283129, 11: 2283129, 2887: 2317619, 2890: 2317619, 2891: 2317845}
[2026-02-09 01:23:08] 2026-02-09 00:22:20,885 | INFO     | --------------------------------------------------
[2026-02-09 01:23:08] 2026-02-09 00:22:20,885 | INFO     | 
[2026-02-09 01:23:08] 2026-02-09 00:22:20,885 | INFO     | executing command: ls -lF /tmp/job_11084007/atlas/pilot/slots/0
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,893 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | job 7004653696 has completed (purged errors)
[2026-02-09 01:23:08] 2026-02-09 00:22:20,894 | INFO     | overall cleanup function is called
[2026-02-09 01:23:08] 2026-02-09 00:22:21,900 | INFO     | --- collectZombieJob: --- 10, [20484]
[2026-02-09 01:23:08] 2026-02-09 00:22:21,900 | INFO     | zombie collector waiting for pid 20484
[2026-02-09 01:23:08] 2026-02-09 00:22:21,900 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 01:23:08] 2026-02-09 00:22:21,900 | INFO     | collected zombie processes
[2026-02-09 01:23:08] 2026-02-09 00:22:21,900 | INFO     | will attempt to kill all subprocesses of pid=20484
[2026-02-09 01:23:08] 2026-02-09 00:22:21,999 | INFO     | process IDs to be killed: [20484] (in reverse order)
[2026-02-09 01:23:08] 2026-02-09 00:22:22,032 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 01:23:08] 2026-02-09 00:22:22,033 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 01:23:08] 2026-02-09 00:22:22,036 | INFO     | did not find any defunct processes belonging to 20484
[2026-02-09 01:23:08] 2026-02-09 00:22:22,039 | INFO     | did not find any defunct processes belonging to 20484
[2026-02-09 01:23:08] 2026-02-09 00:22:22,039 | INFO     | ready for new job
[2026-02-09 01:23:08] 2026-02-09 00:22:22,039 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 01:23:08] 2026-02-09 00:22:22,040 | INFO     | **************************************
[2026-02-09 01:23:08] 2026-02-09 00:22:22,040 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 01:23:08] 2026-02-09 00:22:22,040 | INFO     | **************************************
[2026-02-09 01:23:08] 2026-02-09 00:22:22,040 | INFO     | 
[2026-02-09 01:23:08] 2026-02-09 00:22:22,053 | INFO     | architecture information:
[2026-02-09 01:23:08] 2026-02-09 00:22:22,053 | INFO     | executing command: cat /etc/os-release
[2026-02-09 01:23:08] 2026-02-09 00:22:22,060 | INFO     | cat /etc/os-release:
[2026-02-09 01:23:08] NAME="CentOS Linux"
[2026-02-09 01:23:08] VERSION="7 (Core)"
[2026-02-09 01:23:08] ID="centos"
[2026-02-09 01:23:08] ID_LIKE="rhel fedora"
[2026-02-09 01:23:08] VERSION_ID="7"
[2026-02-09 01:23:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 01:23:08] ANSI_COLOR="0;31"
[2026-02-09 01:23:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 01:23:08] HOME_URL="https://www.centos.org/"
[2026-02-09 01:23:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 01:23:08] 
[2026-02-09 01:23:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 01:23:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 01:23:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 01:23:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 01:23:08] 
[2026-02-09 01:23:08] 2026-02-09 00:22:22,060 | INFO     | **************************************
[2026-02-09 01:23:08] 2026-02-09 00:22:22,561 | INFO     | executing command: df -mP /tmp/job_11084007/atlas/pilot/slots/0
[2026-02-09 01:23:08] 2026-02-09 00:22:22,566 | INFO     | sufficient remaining disk space (225845444608 B)
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | INFO     | update_server=False
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 01:23:08] 2026-02-09 00:22:22,567 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 01:23:08] 2026-02-09 00:22:23,121 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 01:23:08] 2026-02-09 00:22:23,222 | INFO     | all data control threads have been joined
[2026-02-09 01:23:08] 2026-02-09 00:22:23,572 | INFO     | [job] retrieve thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:23,572 | INFO     | [job] queue monitor thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:23,636 | INFO     | all payload control threads have been joined
[2026-02-09 01:23:08] 2026-02-09 00:22:23,825 | INFO     | all job control threads have been joined
[2026-02-09 01:23:08] 2026-02-09 00:22:23,901 | WARNING  | process 20484 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 01:23:08] 2026-02-09 00:22:23,927 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:23,979 | INFO     | using path: /tmp/job_11084007/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 01:23:08] 2026-02-09 00:22:23,979 | INFO     | using path: /tmp/job_11084007/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 01:23:08] 2026-02-09 00:22:23,979 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-09 01:23:08] 2026-02-09 00:22:23,979 | WARNING  | maxPSS not found in memory monitor output
[2026-02-09 01:23:08] 2026-02-09 00:22:23,980 | INFO     | skipping file size check of payload stdout file (/tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/payload.stdout) since it has not been created yet
[2026-02-09 01:23:08] 2026-02-09 00:22:23,980 | INFO     | executing command: df -mP /tmp/job_11084007/atlas/pilot/slots/0
[2026-02-09 01:23:08] 2026-02-09 00:22:23,987 | INFO     | sufficient remaining disk space (225845444608 B)
[2026-02-09 01:23:08] 2026-02-09 00:22:23,987 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-09 01:23:08] 2026-02-09 00:22:23,987 | INFO     | output file size check: skipping output file /tmp/job_11084007/atlas/pilot/slots/0/PanDA_Pilot-7004653696/HITS.48318034._012364.pool.root.1 since it does not exist
[2026-02-09 01:23:08] 2026-02-09 00:22:24,083 | INFO     | number of running child processes to parent process 20484: 1
[2026-02-09 01:23:08] 2026-02-09 00:22:24,083 | INFO     | maximum number of monitored processes: 6
[2026-02-09 01:23:08] 2026-02-09 00:22:24,083 | INFO     | aborting job monitoring since job object (job id=7004653696) has expired
[2026-02-09 01:23:08] 2026-02-09 00:22:24,083 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 01:23:08] 2026-02-09 00:22:24,083 | INFO     | will abort loop
[2026-02-09 01:23:08] 2026-02-09 00:22:24,227 | INFO     | [data] control thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,300 | INFO     | [job] validate thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,309 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,336 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,382 | INFO     | [payload] validate_post thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,430 | INFO     | [data] copytool_in thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,573 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,641 | INFO     | [payload] control thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,738 | INFO     | [payload] failed_post thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:24,830 | INFO     | [job] control thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:25,088 | INFO     | [job] job monitor thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:25,126 | INFO     | [data] copytool_out thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:26,573 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 01:23:08] 2026-02-09 00:22:52,077 | INFO     | PID=14702 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2026-02-09 01:23:08] 2026-02-09 00:22:52,077 | INFO     | .. there are 3 such processes running
[2026-02-09 01:23:08] 2026-02-09 00:22:52,077 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 01:23:08] 2026-02-09 00:22:52,077 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 01:23:08] 2026-02-09 00:22:52,077 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 01:23:08] 2026-02-09 00:23:03,237 | INFO     | [monitor] cgroup control has ended
[2026-02-09 01:23:08] 2026-02-09 00:23:03,609 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456065292032)>']
[2026-02-09 01:23:08] 2026-02-09 00:23:04,138 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 01:23:08] 2026-02-09 00:23:04,138 | INFO     | [monitor] control thread has ended
[2026-02-09 01:23:08] 2026-02-09 00:23:08,635 | INFO     | all workflow threads have been joined
[2026-02-09 01:23:08] 2026-02-09 00:23:08,635 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 01:23:08] 2026-02-09 00:23:08,635 | INFO     | traces error code: 0
[2026-02-09 01:23:08] 2026-02-09 00:23:08,635 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 01:23:08] 2026-02-09 00:23:08,685 [wrapper] ==== pilot stdout END ====
[2026-02-09 01:23:08] 2026-02-09 00:23:08,687 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 01:23:08] 2026-02-09 00:23:08,688 [wrapper] pilotpid: 14702
[2026-02-09 01:23:08] 2026-02-09 00:23:08,689 [wrapper] Pilot exit status: 0
[2026-02-09 01:23:08] 2026-02-09 00:23:08,693 [wrapper] pandaids: 7004653696
[2026-02-09 01:23:08] 2026-02-09 00:23:08,715 [wrapper] cleanup supervisor_pilot  2959 14703
[2026-02-09 01:23:08] 2026-02-09 00:23:08,716 [wrapper] Test setup, not cleaning
[2026-02-09 01:23:08] 2026-02-09 00:23:08,718 [wrapper] apfmon messages muted
[2026-02-09 01:23:08] 2026-02-09 00:23:08,719 [wrapper] ==== wrapper stdout END ====
[2026-02-09 01:23:08] 2026-02-09 00:23:08,720 [wrapper] ==== wrapper stderr END ====
[2026-02-09 01:23:08]  *** Error codes and diagnostics ***
[2026-02-09 01:23:08]     "exeErrorCode": 0,
[2026-02-09 01:23:08]     "exeErrorDiag": "",
[2026-02-09 01:23:08]     "pilotErrorCode": 0,
[2026-02-09 01:23:08]     "pilotErrorDiag": "",
[2026-02-09 01:23:08]  *** Listing of results directory ***
[2026-02-09 01:23:08] total 682720
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user    584627 Feb  8 12:49 pilot3.tar.gz
[2026-02-09 01:23:08] -rwx------ 1 mf493845 unix-user     36322 Feb  8 12:52 runpilot2-wrapper.sh
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      5111 Feb  8 12:54 queuedata.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       100 Feb  8 22:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 01:23:08] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  8 22:26 run_atlas
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       105 Feb  8 22:26 job.xml
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user 501808024 Feb  9 00:33 EVNT.48318032._000173.pool.root.1
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  9 00:33 start_atlas.sh
[2026-02-09 01:23:08] drwxrwx--x 2 mf493845 unix-user       100 Feb  9 00:33 shared
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user    597967 Feb  9 00:33 input.tar.gz
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      6390 Feb  9 00:33 init_data.xml
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user         0 Feb  9 00:33 boinc_setup_complete
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      8192 Feb  9 00:33 boinc_mmap_file
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user         0 Feb  9 00:33 boinc_lockfile
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      2537 Feb  9 00:33 pandaJob.out
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user   1009496 Feb  9 00:33 agis_schedconf.cvmfs.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user   1513088 Feb  9 00:33 agis_ddmendpoints.agis.ALL.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       416 Feb  9 00:33 workernode_map.json
[2026-02-09 01:23:08] drwx------ 5 mf493845 unix-user       440 Feb  9 00:33 pilot3
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user 191822386 Feb  9 01:21 HITS.48318034._012364.pool.root.1
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      1013 Feb  9 01:22 memory_monitor_summary.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user    319944 Feb  9 01:22 log.48318034._012364.job.log.tgz.1
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      6301 Feb  9 01:22 heartbeat.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user        95 Feb  9 01:22 pilot_heartbeat.json
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      6388 Feb  9 01:23 pilotlog.txt
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user    460774 Feb  9 01:23 log.48318034._012364.job.log.1
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       357 Feb  9 01:23 output.list
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       620 Feb  9 01:23 runtime_log
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user    798720 Feb  9 01:23 result.tar.gz
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user      9219 Feb  9 01:23 runtime_log.err
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user       641 Feb  9 01:23 5RrKDmqVI98n9Rq4apOajLDm4fhM0noT9bVooX4SDmrAdKDmfpRMqn.diag
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user     22589 Feb  9 01:23 stderr.txt
[2026-02-09 01:23:08] HITS file was successfully produced:
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user 191822386 Feb  9 01:21 shared/HITS.pool.root.1
[2026-02-09 01:23:08]  *** Contents of shared directory: ***
[2026-02-09 01:23:08] total 678756
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user 501808024 Feb  9 00:33 ATLAS.root_0
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  9 00:33 start_atlas.sh
[2026-02-09 01:23:08] -rw-r--r-- 2 mf493845 unix-user    597967 Feb  9 00:33 input.tar.gz
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user 191822386 Feb  9 01:21 HITS.pool.root.1
[2026-02-09 01:23:08] -rw------- 1 mf493845 unix-user    798720 Feb  9 01:23 result.tar.gz
01:23:10 (9848): run_atlas exited; CPU time 20970.863586
01:23:10 (9848): called boinc_finish(0)

</stderr_txt>
]]>

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