Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
20:51:57 (436137): wrapper (7.7.26015): starting
20:51:57 (436137): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 20:51:57] Arguments: --nthreads 4
[2026-02-08 20:51:57] Threads: 4
[2026-02-08 20:51:57] Checking for CVMFS
[2026-02-08 20:51:57] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 20:51:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 20:51:57] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 20:51:58] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 20:51:58] 2.13.1.0 2667185 3742 95828 156031 3 55 9621897 10240000 1822 130560 0 4248539 99.993 137829 320 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.101.101:3128 1
[2026-02-08 20:51:58] CVMFS is ok
[2026-02-08 20:51:58] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 20:51:58] Checking for apptainer binary...
[2026-02-08 20:51:58] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 20:51:58] Running /usr/bin/apptainer --version
[2026-02-08 20:51:58] apptainer version 1.4.5
[2026-02-08 20:51:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 20:51:58] ellievl
[2026-02-08 20:51:58] apptainer works
[2026-02-08 20:51:58] Set ATHENA_PROC_NUMBER=4
[2026-02-08 20:51:58] Set ATHENA_CORE_NUMBER=4
[2026-02-08 20:51:58] Starting ATLAS job with PandaID=7004654447
[2026-02-08 20:51:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc_data/boinc-01/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 22:22:41]  *** The last 200 lines of the pilot log: ***
[2026-02-08 22:22:41]  scope=mc23_13p6TeV
[2026-02-08 22:22:41]  status=None
[2026-02-08 22:22:41]  status_code=0
[2026-02-08 22:22:41]  storage_token=
[2026-02-08 22:22:41]  surl=/var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/log.48318034._012550.job.log.tgz.1
[2026-02-08 22:22:41]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/fb/log.48318034._012550.job.log.tgz.1
[2026-02-08 22:22:41]  workdir=None
[2026-02-08 22:22:41] ]
[2026-02-08 22:22:41] 2026-02-08 21:22:01,877 | INFO     | transferring file log.48318034._012550.job.log.tgz.1 from /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/log.48318034._012550.job.log.tgz.1 to /var/li
[2026-02-08 22:22:41] 2026-02-08 21:22:01,877 | INFO     | executing command: /usr/bin/env mv /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/log.48318034._012550.job.log.tgz.1 /var/lib/boinc_data/boinc-01/slot
[2026-02-08 22:22:41] 2026-02-08 21:22:01,907 | INFO     | adding to output.list: log.48318034._012550.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/4e/fb/log.48318034._012550.job.log.tg
[2026-02-08 22:22:41] 2026-02-08 21:22:01,909 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 22:22:41] 2026-02-08 21:22:01,909 | INFO     | summary of transferred files:
[2026-02-08 22:22:41] 2026-02-08 21:22:01,909 | INFO     |  -- lfn=log.48318034._012550.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 22:22:41] 2026-02-08 21:22:01,909 | INFO     | stage-out finished correctly
[2026-02-08 22:22:41] 2026-02-08 21:22:03,076 | INFO     | time since job start (5379s) is within the limit (349056.0s)
[2026-02-08 22:22:41] 2026-02-08 21:22:03,848 | WARNING  | process 444710 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 22:22:41] 2026-02-08 21:22:03,849 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 22:22:41] 2026-02-08 21:22:04,073 | INFO     | number of running child processes to parent process 444710: 1
[2026-02-08 22:22:41] 2026-02-08 21:22:04,073 | INFO     | maximum number of monitored processes: 6
[2026-02-08 22:22:41] 2026-02-08 21:22:05,083 | INFO     | time since job start (5381s) is within the limit (349056.0s)
[2026-02-08 22:22:41] 2026-02-08 21:22:05,445 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 22:22:41] 2026-02-08 21:22:06,577 | INFO     | monitor loop #402: job 0:7004654447 is in state 'finished'
[2026-02-08 22:22:41] 2026-02-08 21:22:06,578 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,090 | INFO     | time since job start (5383s) is within the limit (349056.0s)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,935 | INFO     | job 7004654447 has state=finished
[2026-02-08 22:22:41] 2026-02-08 21:22:07,935 | INFO     | preparing for final server update for job 7004654447 in state='finished'
[2026-02-08 22:22:41] 2026-02-08 21:22:07,935 | INFO     | reading metadata from: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/jobReport.json
[2026-02-08 22:22:41] 2026-02-08 21:22:07,937 | INFO     | added worker_node to metadata from /var/lib/boinc_data/boinc-01/slots/0/workernode_map.json
[2026-02-08 22:22:41] 2026-02-08 21:22:07,937 | INFO     | this job has now completed (state=finished)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,937 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,937 | INFO     | log transfer has been attempted: DONE
[2026-02-08 22:22:41] 2026-02-08 21:22:07,937 | INFO     | job 7004654447 has finished - writing final server update
[2026-02-08 22:22:41] 2026-02-08 21:22:07,938 | INFO     | total number of processed events: 400 (read)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,940 | INFO     | using path: /var/lib/boinc_data/boinc-01/slots/0/PanDA_Pilot-7004654447/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,940 | INFO     | extracted standard info from prmon json
[2026-02-08 22:22:41] 2026-02-08 21:22:07,940 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 22:22:41] 2026-02-08 21:22:07,940 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 22:22:41] 2026-02-08 21:22:07,941 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 22:22:41] 2026-02-08 21:22:07,941 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | fitting pss+swap vs Time
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | sum of square deviations: 164765880.0
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | sum of deviations: -10484290027.0
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | mean x: 1770583119.0
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | mean y: 2407023.5432098764
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | intersect: 112667158588.04343
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | chi2: 0.12385809513911598
[2026-02-08 22:22:41] 2026-02-08 21:22:07,942 | INFO     | current memory leak: -63.63 B/s (using 81 data points, chi2=0.12)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | could have reported an average CPU frequency of 3700 MHz (6 samples)
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | ..............................
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . Timing measurements:
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . get job = 0 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . initial setup = 9 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . payload setup = 10 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . stage-in = 0 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . payload execution = 5351 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . stage-out = 0 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | . log creation = 0 s
[2026-02-08 22:22:41] 2026-02-08 21:22:07,943 | INFO     | ..............................
[2026-02-08 22:22:41] 2026-02-08 21:22:08,314 | INFO     | 
[2026-02-08 22:22:41] 2026-02-08 21:22:08,315 | INFO     | job summary report
[2026-02-08 22:22:41] 2026-02-08 21:22:08,315 | INFO     | --------------------------------------------------
[2026-02-08 22:22:41] 2026-02-08 21:22:08,315 | INFO     | PanDA job id: 7004654447
[2026-02-08 22:22:41] 2026-02-08 21:22:08,315 | INFO     | task id: 48318034
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | errors: (none)
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | pilot state: finished 
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | transexitcode: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | exeerrorcode: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | exeerrordiag: 
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | exitcode: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | exitmsg: OK
[2026-02-08 22:22:41] 2026-02-08 21:22:08,316 | INFO     | cpuconsumptiontime: 20257 s
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | nevents: 400
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | neventsw: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | pid: 444710
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | pgrp: 444710
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | corecount: 4
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | event service: False
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | sizes: {0: 2283069, 11: 2283069, 5364: 2309537, 5365: 2309536, 5366: 2318618, 5370: 2318674, 5372: 2318996}
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | --------------------------------------------------
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | 
[2026-02-08 22:22:41] 2026-02-08 21:22:08,317 | INFO     | executing command: ls -lF /var/lib/boinc_data/boinc-01/slots/0
[2026-02-08 22:22:41] 2026-02-08 21:22:08,344 | INFO     | PID=440159 has CPU usage=8.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 22:22:41] 2026-02-08 21:22:08,345 | INFO     | .. there are 3 such processes running
[2026-02-08 22:22:41] 2026-02-08 21:22:08,351 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,351 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,352 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | job 7004654447 has completed (purged errors)
[2026-02-08 22:22:41] 2026-02-08 21:22:08,353 | INFO     | overall cleanup function is called
[2026-02-08 22:22:41] 2026-02-08 21:22:09,361 | INFO     | --- collectZombieJob: --- 10, [444710]
[2026-02-08 22:22:41] 2026-02-08 21:22:09,362 | INFO     | zombie collector waiting for pid 444710
[2026-02-08 22:22:41] 2026-02-08 21:22:09,362 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 22:22:41] 2026-02-08 21:22:09,362 | INFO     | collected zombie processes
[2026-02-08 22:22:41] 2026-02-08 21:22:09,362 | INFO     | will attempt to kill all subprocesses of pid=444710
[2026-02-08 22:22:41] 2026-02-08 21:22:09,579 | INFO     | process IDs to be killed: [444710] (in reverse order)
[2026-02-08 22:22:41] 2026-02-08 21:22:09,670 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 22:22:41] 2026-02-08 21:22:09,671 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 22:22:41] 2026-02-08 21:22:09,677 | INFO     | did not find any defunct processes belonging to 444710
[2026-02-08 22:22:41] 2026-02-08 21:22:09,681 | INFO     | did not find any defunct processes belonging to 444710
[2026-02-08 22:22:41] 2026-02-08 21:22:09,682 | INFO     | ready for new job
[2026-02-08 22:22:41] 2026-02-08 21:22:09,682 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 22:22:41] 2026-02-08 21:22:09,684 | INFO     | **************************************
[2026-02-08 22:22:41] 2026-02-08 21:22:09,684 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 22:22:41] 2026-02-08 21:22:09,684 | INFO     | **************************************
[2026-02-08 22:22:41] 2026-02-08 21:22:09,684 | INFO     | 
[2026-02-08 22:22:41] 2026-02-08 21:22:09,685 | INFO     | pilot is running in a VM
[2026-02-08 22:22:41] 2026-02-08 21:22:09,685 | INFO     | architecture information:
[2026-02-08 22:22:41] 2026-02-08 21:22:09,686 | INFO     | executing command: cat /etc/os-release
[2026-02-08 22:22:41] 2026-02-08 21:22:09,710 | INFO     | cat /etc/os-release:
[2026-02-08 22:22:41] NAME="CentOS Linux"
[2026-02-08 22:22:41] VERSION="7 (Core)"
[2026-02-08 22:22:41] ID="centos"
[2026-02-08 22:22:41] ID_LIKE="rhel fedora"
[2026-02-08 22:22:41] VERSION_ID="7"
[2026-02-08 22:22:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 22:22:41] ANSI_COLOR="0;31"
[2026-02-08 22:22:41] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 22:22:41] HOME_URL="https://www.centos.org/"
[2026-02-08 22:22:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 22:22:41] 
[2026-02-08 22:22:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 22:22:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 22:22:41] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 22:22:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 22:22:41] 
[2026-02-08 22:22:41] 2026-02-08 21:22:09,710 | INFO     | **************************************
[2026-02-08 22:22:41] 2026-02-08 21:22:10,214 | INFO     | executing command: df -mP /var/lib/boinc_data/boinc-01/slots/0
[2026-02-08 22:22:41] 2026-02-08 21:22:10,235 | INFO     | sufficient remaining disk space (52359593984 B)
[2026-02-08 22:22:41] 2026-02-08 21:22:10,236 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 22:22:41] 2026-02-08 21:22:10,236 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 22:22:41] 2026-02-08 21:22:10,236 | INFO     | update_server=False
[2026-02-08 22:22:41] 2026-02-08 21:22:10,236 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 22:22:41] 2026-02-08 21:22:10,237 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 22:22:41] 2026-02-08 21:22:10,237 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 22:22:41] 2026-02-08 21:22:10,237 | INFO     | aborting loop
[2026-02-08 22:22:41] 2026-02-08 21:22:11,118 | INFO     | all job control threads have been joined
[2026-02-08 22:22:41] 2026-02-08 21:22:11,195 | INFO     | all data control threads have been joined
[2026-02-08 22:22:41] 2026-02-08 21:22:11,242 | INFO     | [job] retrieve thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:11,243 | INFO     | [job] job monitor thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:11,425 | INFO     | all payload control threads have been joined
[2026-02-08 22:22:41] 2026-02-08 21:22:11,491 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 22:22:41] 2026-02-08 21:22:11,699 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,124 | INFO     | [job] control thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,201 | INFO     | [data] control thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,243 | INFO     | [data] copytool_out thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,337 | INFO     | [job] validate thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,351 | INFO     | [payload] failed_post thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,431 | INFO     | [payload] control thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,441 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,524 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,645 | INFO     | [data] copytool_in thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,843 | INFO     | [payload] validate_post thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:12,996 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 22:22:41] 2026-02-08 21:22:14,002 | INFO     | [job] queue monitor thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:14,394 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-02-08 22:22:41] 2026-02-08 21:22:15,498 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:20,889 | INFO     | job.realtimelogging is not enabled
[2026-02-08 22:22:41] 2026-02-08 21:22:21,895 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 22:22:41] 2026-02-08 21:22:31,541 | INFO     | [monitor] cgroup control has ended
[2026-02-08 22:22:41] 2026-02-08 21:22:33,214 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 135805406529344)>', '<ExcThread(monitor, started 135804156364544)>']
[2026-02-08 22:22:41] 2026-02-08 21:22:38,218 | INFO     | all workflow threads have been joined
[2026-02-08 22:22:41] 2026-02-08 21:22:38,218 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 22:22:41] 2026-02-08 21:22:38,218 | INFO     | traces error code: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:38,219 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 22:22:41] 2026-02-08 21:22:39,438 | INFO     | 5394s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | INFO     | PID=440159 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | INFO     | .. there are 3 such processes running
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 22:22:41] 2026-02-08 21:22:40,685 | INFO     | [monitor] control thread has ended
[2026-02-08 22:22:41] 2026-02-08 21:22:40,793 [wrapper] ==== pilot stdout END ====
[2026-02-08 22:22:41] 2026-02-08 21:22:40,799 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 22:22:41] 2026-02-08 21:22:40,806 [wrapper] pilotpid: 440159
[2026-02-08 22:22:41] 2026-02-08 21:22:40,813 [wrapper] Pilot exit status: 0
[2026-02-08 22:22:41] 2026-02-08 21:22:40,837 [wrapper] pandaids: 7004654447
[2026-02-08 22:22:41] 2026-02-08 21:22:40,903 [wrapper] cleanup supervisor_pilot  493852 440160
[2026-02-08 22:22:41] 2026-02-08 21:22:40,909 [wrapper] Test setup, not cleaning
[2026-02-08 22:22:41] 2026-02-08 21:22:40,916 [wrapper] apfmon messages muted
[2026-02-08 22:22:41] 2026-02-08 21:22:40,922 [wrapper] ==== wrapper stdout END ====
[2026-02-08 22:22:41] 2026-02-08 21:22:40,928 [wrapper] ==== wrapper stderr END ====
[2026-02-08 22:22:41]  *** Error codes and diagnostics ***
[2026-02-08 22:22:41]     "exeErrorCode": 0,
[2026-02-08 22:22:41]     "exeErrorDiag": "",
[2026-02-08 22:22:41]     "pilotErrorCode": 0,
[2026-02-08 22:22:41]     "pilotErrorDiag": "",
[2026-02-08 22:22:41]  *** Listing of results directory ***
[2026-02-08 22:22:41] insgesamt 673336
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc    584627 Feb  8 12:49 pilot3.tar.gz
[2026-02-08 22:22:41] -rwx------ 1 yeti boinc     36322 Feb  8 12:52 runpilot2-wrapper.sh
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc      5111 Feb  8 12:54 queuedata.json
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc       100 Feb  8 20:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 22:22:41] -rwxr-xr-x 1 yeti boinc      7986 Feb  8 20:51 run_atlas
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc       105 Feb  8 20:51 job.xml
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc 498257103 Feb  8 20:51 EVNT.48318032._000218.pool.root.1
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc     15845 Feb  8 20:51 start_atlas.sh
[2026-02-08 22:22:41] drwxrwx--x 2 yeti boinc      4096 Feb  8 20:51 shared
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc    597956 Feb  8 20:51 input.tar.gz
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc         0 Feb  8 20:51 boinc_setup_complete
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc      6558 Feb  8 20:51 init_data.xml
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc         0 Feb  8 20:51 boinc_lockfile
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc      2538 Feb  8 20:51 pandaJob.out
[2026-02-08 22:22:41] -rw------- 1 yeti boinc        52 Feb  8 20:51 setup.sh.local
[2026-02-08 22:22:41] -rw------- 1 yeti boinc   1009496 Feb  8 20:52 agis_schedconf.cvmfs.json
[2026-02-08 22:22:41] -rw------- 1 yeti boinc   1513088 Feb  8 20:52 agis_ddmendpoints.agis.ALL.json
[2026-02-08 22:22:41] -rw------- 1 yeti boinc       419 Feb  8 20:52 workernode_map.json
[2026-02-08 22:22:41] drwx------ 5 yeti boinc      4096 Feb  8 20:52 pilot3
[2026-02-08 22:22:41] -rw------- 1 yeti boinc 185144127 Feb  8 22:21 HITS.48318034._012550.pool.root.1
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc       530 Feb  8 22:21 boinc_task_state.xml
[2026-02-08 22:22:41] -rw------- 1 yeti boinc        95 Feb  8 22:21 pilot_heartbeat.json
[2026-02-08 22:22:41] -rw------- 1 yeti boinc      1014 Feb  8 22:21 memory_monitor_summary.json
[2026-02-08 22:22:41] -rw------- 1 yeti boinc    284459 Feb  8 22:22 log.48318034._012550.job.log.tgz.1
[2026-02-08 22:22:41] -rw------- 1 yeti boinc      6275 Feb  8 22:22 heartbeat.json
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc        27 Feb  8 22:22 wrapper_checkpoint.txt
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc      8192 Feb  8 22:22 boinc_mmap_file
[2026-02-08 22:22:41] -rw------- 1 yeti boinc       936 Feb  8 22:22 pilotlog.txt
[2026-02-08 22:22:41] -rw------- 1 yeti boinc    789414 Feb  8 22:22 log.48318034._012550.job.log.1
[2026-02-08 22:22:41] -rw------- 1 yeti boinc       357 Feb  8 22:22 output.list
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc       620 Feb  8 22:22 runtime_log
[2026-02-08 22:22:41] -rw------- 1 yeti boinc   1095680 Feb  8 22:22 result.tar.gz
[2026-02-08 22:22:41] -rw------- 1 yeti boinc       637 Feb  8 22:22 pg2NDmqVI98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmlhdKDmPJeWHm.diag
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc      9536 Feb  8 22:22 runtime_log.err
[2026-02-08 22:22:41] -rw-r--r-- 1 yeti boinc     21761 Feb  8 22:22 stderr.txt
[2026-02-08 22:22:41] HITS file was successfully produced:
[2026-02-08 22:22:41] -rw------- 1 yeti boinc 185144127 Feb  8 22:21 shared/HITS.pool.root.1
[2026-02-08 22:22:41]  *** Contents of shared directory: ***
[2026-02-08 22:22:41] insgesamt 669068
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc 498257103 Feb  8 20:51 ATLAS.root_0
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc     15845 Feb  8 20:51 start_atlas.sh
[2026-02-08 22:22:41] -rw-r--r-- 2 yeti boinc    597956 Feb  8 20:51 input.tar.gz
[2026-02-08 22:22:41] -rw------- 1 yeti boinc 185144127 Feb  8 22:21 HITS.pool.root.1
[2026-02-08 22:22:41] -rw------- 1 yeti boinc   1095680 Feb  8 22:22 result.tar.gz
22:22:42 (436137): run_atlas exited; CPU time 20490.322510
22:22:42 (436137): called boinc_finish(0)

</stderr_txt>
]]>

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