Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:41:08 (2329390): wrapper (7.7.26015): starting
07:41:08 (2329390): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 07:41:08] Arguments: --nthreads 3
[2026-02-09 07:41:08] Threads: 3
[2026-02-09 07:41:08] Checking for CVMFS
[2026-02-09 07:41:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 07:41:08] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 07:41:08] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 07:41:08] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 07:41:08] 2.9.2.0 1622115 4272 79112 156046 0 50 26298693 36864000 0 130560 0 1844734 99.983 154132 17029 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 07:41:08] CVMFS is ok
[2026-02-09 07:41:08] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 07:41:08] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 07:41:08] Further information can be found at the LHC@home message board.
[2026-02-09 07:41:08] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 07:41:08] Checking for apptainer binary...
[2026-02-09 07:41:08] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 07:41:08] Running /usr/bin/apptainer --version
[2026-02-09 07:41:08] apptainer version 1.4.1-1.1
[2026-02-09 07:41:08] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 07:41:08] magicA246a
[2026-02-09 07:41:08] apptainer works
[2026-02-09 07:41:08] Set ATHENA_PROC_NUMBER=3
[2026-02-09 07:41:08] Set ATHENA_CORE_NUMBER=3
[2026-02-09 07:41:08] Starting ATLAS job with PandaID=7005371187
[2026-02-09 07:41:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 09:10:44]  *** The last 200 lines of the pilot log: ***
[2026-02-09 09:10:44] 2026-02-09 08:10:11,897 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 09:10:44] 2026-02-09 08:10:11,897 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 09:10:44] 2026-02-09 08:10:11,897 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 09:10:44] 2026-02-09 08:10:11,898 | INFO     | job 7005371187 has completed (purged errors)
[2026-02-09 09:10:44] 2026-02-09 08:10:11,898 | INFO     | overall cleanup function is called
[2026-02-09 09:10:44] 2026-02-09 08:10:12,904 | INFO     | --- collectZombieJob: --- 10, [2337870]
[2026-02-09 09:10:44] 2026-02-09 08:10:12,905 | INFO     | zombie collector waiting for pid 2337870
[2026-02-09 09:10:44] 2026-02-09 08:10:12,905 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 09:10:44] 2026-02-09 08:10:12,905 | INFO     | collected zombie processes
[2026-02-09 09:10:44] 2026-02-09 08:10:12,905 | INFO     | will attempt to kill all subprocesses of pid=2337870
[2026-02-09 09:10:44] 2026-02-09 08:10:12,962 | INFO     | process IDs to be killed: [2337870] (in reverse order)
[2026-02-09 09:10:44] 2026-02-09 08:10:12,991 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 09:10:44] 2026-02-09 08:10:12,991 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 09:10:44] 2026-02-09 08:10:12,993 | INFO     | did not find any defunct processes belonging to 2337870
[2026-02-09 09:10:44] 2026-02-09 08:10:12,994 | INFO     | did not find any defunct processes belonging to 2337870
[2026-02-09 09:10:44] 2026-02-09 08:10:12,994 | INFO     | ready for new job
[2026-02-09 09:10:44] 2026-02-09 08:10:12,994 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 09:10:44] 2026-02-09 08:10:12,995 | INFO     | **************************************
[2026-02-09 09:10:44] 2026-02-09 08:10:12,995 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 09:10:44] 2026-02-09 08:10:12,995 | INFO     | **************************************
[2026-02-09 09:10:44] 2026-02-09 08:10:12,995 | INFO     | 
[2026-02-09 09:10:44] 2026-02-09 08:10:12,995 | INFO     | architecture information:
[2026-02-09 09:10:44] 2026-02-09 08:10:12,996 | INFO     | executing command: cat /etc/os-release
[2026-02-09 09:10:44] 2026-02-09 08:10:13,004 | INFO     | cat /etc/os-release:
[2026-02-09 09:10:44] NAME="CentOS Linux"
[2026-02-09 09:10:44] VERSION="7 (Core)"
[2026-02-09 09:10:44] ID="centos"
[2026-02-09 09:10:44] ID_LIKE="rhel fedora"
[2026-02-09 09:10:44] VERSION_ID="7"
[2026-02-09 09:10:44] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 09:10:44] ANSI_COLOR="0;31"
[2026-02-09 09:10:44] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 09:10:44] HOME_URL="https://www.centos.org/"
[2026-02-09 09:10:44] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 09:10:44] 
[2026-02-09 09:10:44] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 09:10:44] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 09:10:44] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 09:10:44] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 09:10:44] 
[2026-02-09 09:10:44] 2026-02-09 08:10:13,004 | INFO     | **************************************
[2026-02-09 09:10:44] 2026-02-09 08:10:13,507 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | INFO     | sufficient remaining disk space (274472108032 B)
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | INFO     | update_server=False
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 09:10:44] 2026-02-09 08:10:13,520 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 09:10:44] 2026-02-09 08:10:13,523 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 09:10:44] 2026-02-09 08:10:13,679 | INFO     | all data control threads have been joined
[2026-02-09 09:10:44] 2026-02-09 08:10:14,320 | INFO     | all job control threads have been joined
[2026-02-09 09:10:44] 2026-02-09 08:10:14,523 | INFO     | [job] queue monitor thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:14,525 | INFO     | [job] retrieve thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:14,684 | INFO     | [data] control thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:14,897 | INFO     | all payload control threads have been joined
[2026-02-09 09:10:44] 2026-02-09 08:10:14,927 | INFO     | [job] validate thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:14,966 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,007 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,060 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,146 | INFO     | [data] copytool_in thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,325 | INFO     | [job] control thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,441 | INFO     | [payload] failed_post thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,527 | INFO     | [data] copytool_out thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,902 | INFO     | [payload] control thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:15,963 | INFO     | [payload] validate_post thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:16,396 | WARNING  | process 2337870 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 09:10:44] 2026-02-09 08:10:16,435 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 09:10:44] 2026-02-09 08:10:16,486 | INFO     | number of running child processes to parent process 2337870: 1
[2026-02-09 09:10:44] 2026-02-09 08:10:16,486 | INFO     | maximum number of monitored processes: 6
[2026-02-09 09:10:44] 2026-02-09 08:10:16,486 | INFO     | aborting job monitoring since job object (job id=7005371187) has expired
[2026-02-09 09:10:44] 2026-02-09 08:10:16,486 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 09:10:44] 2026-02-09 08:10:16,486 | INFO     | will abort loop
[2026-02-09 09:10:44] 2026-02-09 08:10:17,492 | INFO     | [job] job monitor thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:17,527 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:23,551 | INFO     | [monitor] cgroup control has ended
[2026-02-09 09:10:44] 2026-02-09 08:10:24,125 | INFO     | job.realtimelogging is not enabled
[2026-02-09 09:10:44] 2026-02-09 08:10:25,131 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 09:10:44] 2026-02-09 08:10:26,741 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140280191358784)>', '<ExcThread(monitor, started 140279839438592)>']
[2026-02-09 09:10:44] 2026-02-09 08:10:31,766 | INFO     | all workflow threads have been joined
[2026-02-09 09:10:44] 2026-02-09 08:10:31,767 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 09:10:44] 2026-02-09 08:10:31,767 | INFO     | traces error code: 0
[2026-02-09 09:10:44] 2026-02-09 08:10:31,767 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | INFO     | PID=2333437 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 09:10:44] 2026-02-09 08:10:44,360 | INFO     | [monitor] control thread has ended
[2026-02-09 09:10:44] 2026-02-09 08:10:44,410 [wrapper] ==== pilot stdout END ====
[2026-02-09 09:10:44] 2026-02-09 08:10:44,413 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 09:10:44] 2026-02-09 08:10:44,415 [wrapper] pilotpid: 2333437
[2026-02-09 09:10:44] 2026-02-09 08:10:44,418 [wrapper] Pilot exit status: 0
[2026-02-09 09:10:44] 2026-02-09 08:10:44,425 [wrapper] pandaids: 7005371187
[2026-02-09 09:10:44] 2026-02-09 08:10:44,444 [wrapper] cleanup supervisor_pilot 2345019 2333438
[2026-02-09 09:10:44] 2026-02-09 08:10:44,446 [wrapper] Test setup, not cleaning
[2026-02-09 09:10:44] 2026-02-09 08:10:44,449 [wrapper] apfmon messages muted
[2026-02-09 09:10:44] 2026-02-09 08:10:44,451 [wrapper] ==== wrapper stdout END ====
[2026-02-09 09:10:44] 2026-02-09 08:10:44,453 [wrapper] ==== wrapper stderr END ====
[2026-02-09 09:10:44]  *** Error codes and diagnostics ***
[2026-02-09 09:10:44]     "exeErrorCode": 0,
[2026-02-09 09:10:44]     "exeErrorDiag": "",
[2026-02-09 09:10:44]     "pilotErrorCode": 0,
[2026-02-09 09:10:44]     "pilotErrorDiag": "",
[2026-02-09 09:10:44]  *** Listing of results directory ***
[2026-02-09 09:10:44] total 682952
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc    584627 Feb  8 12:49 pilot3.tar.gz
[2026-02-09 09:10:44] -rwx------ 1 boinc boinc     36322 Feb  8 12:53 runpilot2-wrapper.sh
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc      5111 Feb  8 12:56 queuedata.json
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc       100 Feb  9 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 09:10:44] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 07:41 run_atlas
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc       105 Feb  9 07:41 job.xml
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc 507544628 Feb  9 07:41 EVNT.48318040._000255.pool.root.1
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc    597956 Feb  9 07:41 input.tar.gz
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc     15845 Feb  9 07:41 start_atlas.sh
[2026-02-09 09:10:44] drwxrwx--x 2 boinc boinc      4096 Feb  9 07:41 shared
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc         0 Feb  9 07:41 boinc_setup_complete
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc      6447 Feb  9 07:41 init_data.xml
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc         0 Feb  9 07:41 boinc_lockfile
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc      2538 Feb  9 07:41 pandaJob.out
[2026-02-09 09:10:44] -rw------- 1 boinc boinc   1009504 Feb  9 07:41 agis_schedconf.cvmfs.json
[2026-02-09 09:10:44] -rw------- 1 boinc boinc   1513088 Feb  9 07:41 agis_ddmendpoints.agis.ALL.json
[2026-02-09 09:10:44] -rw------- 1 boinc boinc       428 Feb  9 07:41 workernode_map.json
[2026-02-09 09:10:44] drwx------ 5 boinc boinc      4096 Feb  9 07:41 pilot3
[2026-02-09 09:10:44] -rw------- 1 boinc boinc        95 Feb  9 09:09 pilot_heartbeat.json
[2026-02-09 09:10:44] -rw------- 1 boinc boinc 185741502 Feb  9 09:09 HITS.48318042._013425.pool.root.1
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc       530 Feb  9 09:09 boinc_task_state.xml
[2026-02-09 09:10:44] -rw------- 1 boinc boinc      1017 Feb  9 09:10 memory_monitor_summary.json
[2026-02-09 09:10:44] -rw------- 1 boinc boinc    286107 Feb  9 09:10 log.48318042._013425.job.log.tgz.1
[2026-02-09 09:10:44] -rw------- 1 boinc boinc      6314 Feb  9 09:10 heartbeat.json
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc      8192 Feb  9 09:10 boinc_mmap_file
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc        27 Feb  9 09:10 wrapper_checkpoint.txt
[2026-02-09 09:10:44] -rw------- 1 boinc boinc       747 Feb  9 09:10 pilotlog.txt
[2026-02-09 09:10:44] -rw------- 1 boinc boinc    777555 Feb  9 09:10 log.48318042._013425.job.log.1
[2026-02-09 09:10:44] -rw------- 1 boinc boinc       357 Feb  9 09:10 output.list
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc       620 Feb  9 09:10 runtime_log
[2026-02-09 09:10:44] -rw------- 1 boinc boinc   1085440 Feb  9 09:10 result.tar.gz
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc      8916 Feb  9 09:10 runtime_log.err
[2026-02-09 09:10:44] -rw------- 1 boinc boinc       661 Feb  9 09:10 I8fLDmoWI98n9Rq4apOajLDm4fhM0noT9bVooX4SDmSDdKDmwMANHo.diag
[2026-02-09 09:10:44] -rw-r--r-- 1 boinc boinc     11840 Feb  9 09:10 stderr.txt
[2026-02-09 09:10:44] HITS file was successfully produced:
[2026-02-09 09:10:44] -rw------- 1 boinc boinc 185741502 Feb  9 09:09 shared/HITS.pool.root.1
[2026-02-09 09:10:44]  *** Contents of shared directory: ***
[2026-02-09 09:10:44] total 678712
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc 507544628 Feb  9 07:41 ATLAS.root_0
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc    597956 Feb  9 07:41 input.tar.gz
[2026-02-09 09:10:44] -rw-r--r-- 2 boinc boinc     15845 Feb  9 07:41 start_atlas.sh
[2026-02-09 09:10:44] -rw------- 1 boinc boinc 185741502 Feb  9 09:09 HITS.pool.root.1
[2026-02-09 09:10:44] -rw------- 1 boinc boinc   1085440 Feb  9 09:10 result.tar.gz
09:10:45 (2329390): run_atlas exited; CPU time 15366.144724
09:10:45 (2329390): called boinc_finish(0)

</stderr_txt>
]]>

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