Stderr output

<core_client_version>8.2.8</core_client_version>
<![CDATA[
<stderr_txt>
23:51:29 (23113): wrapper (7.7.26015): starting
23:51:29 (23113): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 23:51:29] Arguments: --nthreads 8
[2026-02-08 23:51:29] Threads: 8
[2026-02-08 23:51:29] Checking for CVMFS
[2026-02-08 23:51:29] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 23:51:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 23:51:29] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 23:51:30] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 23:51:30] 2.11.0.0 8101 172855 107076 156035 2 188 4094582 4096000 3403 130560 2 11127328 99.502 10628923 443 http://cvmfs-stratum-one.cern.ch/cvmfs/atlas.cern.ch http://141.99.253.245:3128 1
[2026-02-08 23:51:30] CVMFS is ok
[2026-02-08 23:51:30] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 23:51:30] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 23:51:30] Further information can be found at the LHC@home message board.
[2026-02-08 23:51:30] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 23:51:30] Checking for apptainer binary...
[2026-02-08 23:51:30] /usr/bin/which: no apptainer in (/opt/ohpc/pub/libs/singularity/3.7.1/bin:/cm/shared/apps/slurm/current/sbin:/cm/shared/apps/slurm/current/bin:/home/mf493845/.local/bin:/home/mf493845/bin:/usr/local/bin:/usr/bin:/usr/local/sbin:/usr/sbin)
[2026-02-08 23:51:30] apptainer is not installed, using version from CVMFS
[2026-02-08 23:51:30] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 23:51:30] WARNING: Environment variable TMPDIR already has value [/tmp/job_11083558/atlas/pilot/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment hpc-node232
[2026-02-08 23:51:30] apptainer works
[2026-02-08 23:51:30] Set ATHENA_PROC_NUMBER=8
[2026-02-08 23:51:30] Set ATHENA_CORE_NUMBER=8
[2026-02-08 23:51:30] Starting ATLAS job with PandaID=7004654711
[2026-02-08 23:51:30] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/tmp/job_11083558/atlas/pilot/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 00:42:48]  *** The last 200 lines of the pilot log: ***
[2026-02-09 00:42:48]  is_tar=False
[2026-02-09 00:42:48]  lfn=log.48318034._012694.job.log.tgz.1
[2026-02-09 00:42:48]  mtime=0
[2026-02-09 00:42:48]  protocol_id=None
[2026-02-09 00:42:48]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-09 00:42:48]  replicas=None
[2026-02-09 00:42:48]  scope=mc23_13p6TeV
[2026-02-09 00:42:48]  status=None
[2026-02-09 00:42:48]  status_code=0
[2026-02-09 00:42:48]  storage_token=
[2026-02-09 00:42:48]  surl=/tmp/job_11083558/atlas/pilot/slots/0/PanDA_Pilot-7004654711/log.48318034._012694.job.log.tgz.1
[2026-02-09 00:42:48]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/54/log.48318034._012694.job.log.tgz.1
[2026-02-09 00:42:48]  workdir=None
[2026-02-09 00:42:48] ]
[2026-02-09 00:42:48] 2026-02-08 23:42:05,060 | INFO     | transferring file log.48318034._012694.job.log.tgz.1 from /tmp/job_11083558/atlas/pilot/slots/0/PanDA_Pilot-7004654711/log.48318034._012694.job.log.tgz.1 to /tmp/j
[2026-02-09 00:42:48] 2026-02-08 23:42:05,060 | INFO     | executing command: /usr/bin/env mv /tmp/job_11083558/atlas/pilot/slots/0/PanDA_Pilot-7004654711/log.48318034._012694.job.log.tgz.1 /tmp/job_11083558/atlas/pilot/sl
[2026-02-09 00:42:48] 2026-02-08 23:42:05,068 | INFO     | adding to output.list: log.48318034._012694.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/bd/54/log.48318034._012694.job.log.tg
[2026-02-09 00:42:48] 2026-02-08 23:42:05,068 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-09 00:42:48] 2026-02-08 23:42:05,068 | INFO     | summary of transferred files:
[2026-02-09 00:42:48] 2026-02-08 23:42:05,068 | INFO     |  -- lfn=log.48318034._012694.job.log.tgz.1, status_code=0, status=transferred
[2026-02-09 00:42:48] 2026-02-08 23:42:05,068 | INFO     | stage-out finished correctly
[2026-02-09 00:42:48] 2026-02-08 23:42:06,378 | INFO     | time since job start (3029s) is within the limit (349056.0s)
[2026-02-09 00:42:48] 2026-02-08 23:42:08,384 | INFO     | time since job start (3031s) is within the limit (349056.0s)
[2026-02-09 00:42:48] 2026-02-08 23:42:08,607 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-09 00:42:48] 2026-02-08 23:42:10,387 | INFO     | time since job start (3033s) is within the limit (349056.0s)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,687 | INFO     | job 7004654711 has state=finished
[2026-02-09 00:42:48] 2026-02-08 23:42:10,687 | INFO     | preparing for final server update for job 7004654711 in state='finished'
[2026-02-09 00:42:48] 2026-02-08 23:42:10,687 | INFO     | reading metadata from: /tmp/job_11083558/atlas/pilot/slots/0/PanDA_Pilot-7004654711/jobReport.json
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | added worker_node to metadata from /tmp/job_11083558/atlas/pilot/slots/0/workernode_map.json
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | this job has now completed (state=finished)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | log transfer has been attempted: DONE
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | job 7004654711 has finished - writing final server update
[2026-02-09 00:42:48] 2026-02-08 23:42:10,689 | INFO     | total number of processed events: 400 (read)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,706 | INFO     | using path: /tmp/job_11083558/atlas/pilot/slots/0/PanDA_Pilot-7004654711/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,707 | INFO     | extracted standard info from prmon json
[2026-02-09 00:42:48] 2026-02-08 23:42:10,707 | INFO     | extracted standard memory fields from prmon json
[2026-02-09 00:42:48] 2026-02-08 23:42:10,707 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-09 00:42:48] 2026-02-08 23:42:10,707 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-09 00:42:48] 2026-02-08 23:42:10,707 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | fitting pss+swap vs Time
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | sum of square deviations: 24640462.0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | sum of deviations: -183380334.99999997
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | mean x: 1770592699.0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | mean y: 2520750.88372093
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | intersect: 13179703966.489584
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | chi2: 0.0012705460053392518
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | current memory leak: -7.44 B/s (using 43 data points, chi2=0.00)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | could have reported an average CPU frequency of 2692 MHz (5 samples)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | ..............................
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | . Timing measurements:
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | . get job = 0 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | . initial setup = 2 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | . payload setup = 2 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,708 | INFO     | . stage-in = 0 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,709 | INFO     | . payload execution = 3012 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,709 | INFO     | . stage-out = 0 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,709 | INFO     | . log creation = 0 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,709 | INFO     | ..............................
[2026-02-09 00:42:48] 2026-02-08 23:42:10,755 | INFO     | 
[2026-02-09 00:42:48] 2026-02-08 23:42:10,755 | INFO     | job summary report
[2026-02-09 00:42:48] 2026-02-08 23:42:10,755 | INFO     | --------------------------------------------------
[2026-02-09 00:42:48] 2026-02-08 23:42:10,755 | INFO     | PanDA job id: 7004654711
[2026-02-09 00:42:48] 2026-02-08 23:42:10,755 | INFO     | task id: 48318034
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | errors: (none)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | pilot state: finished 
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | transexitcode: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | exeerrorcode: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | exeerrordiag: 
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | exitcode: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | exitmsg: OK
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | cpuconsumptiontime: 21830 s
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | nevents: 400
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | neventsw: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | pid: 19845
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | pgrp: 19845
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | corecount: 8
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | event service: False
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | sizes: {0: 2283181, 11: 2283181, 3015: 2308732, 3017: 2317760, 3020: 2317816, 3022: 2318042}
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | --------------------------------------------------
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | 
[2026-02-09 00:42:48] 2026-02-08 23:42:10,756 | INFO     | executing command: ls -lF /tmp/job_11083558/atlas/pilot/slots/0
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 00:42:48] 2026-02-08 23:42:10,766 | INFO     | job 7004654711 has completed (purged errors)
[2026-02-09 00:42:48] 2026-02-08 23:42:10,767 | INFO     | overall cleanup function is called
[2026-02-09 00:42:48] 2026-02-08 23:42:11,772 | INFO     | --- collectZombieJob: --- 10, [19845]
[2026-02-09 00:42:48] 2026-02-08 23:42:11,772 | INFO     | zombie collector waiting for pid 19845
[2026-02-09 00:42:48] 2026-02-08 23:42:11,773 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 00:42:48] 2026-02-08 23:42:11,773 | INFO     | collected zombie processes
[2026-02-09 00:42:48] 2026-02-08 23:42:11,773 | INFO     | will attempt to kill all subprocesses of pid=19845
[2026-02-09 00:42:48] 2026-02-08 23:42:11,868 | INFO     | process IDs to be killed: [19845] (in reverse order)
[2026-02-09 00:42:48] 2026-02-08 23:42:11,902 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 00:42:48] 2026-02-08 23:42:11,902 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 00:42:48] 2026-02-08 23:42:11,905 | INFO     | did not find any defunct processes belonging to 19845
[2026-02-09 00:42:48] 2026-02-08 23:42:11,908 | INFO     | did not find any defunct processes belonging to 19845
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | ready for new job
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | **************************************
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | **************************************
[2026-02-09 00:42:48] 2026-02-08 23:42:11,909 | INFO     | 
[2026-02-09 00:42:48] 2026-02-08 23:42:11,924 | INFO     | architecture information:
[2026-02-09 00:42:48] 2026-02-08 23:42:11,924 | INFO     | executing command: cat /etc/os-release
[2026-02-09 00:42:48] 2026-02-08 23:42:11,930 | INFO     | cat /etc/os-release:
[2026-02-09 00:42:48] NAME="CentOS Linux"
[2026-02-09 00:42:48] VERSION="7 (Core)"
[2026-02-09 00:42:48] ID="centos"
[2026-02-09 00:42:48] ID_LIKE="rhel fedora"
[2026-02-09 00:42:48] VERSION_ID="7"
[2026-02-09 00:42:48] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 00:42:48] ANSI_COLOR="0;31"
[2026-02-09 00:42:48] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 00:42:48] HOME_URL="https://www.centos.org/"
[2026-02-09 00:42:48] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 00:42:48] 
[2026-02-09 00:42:48] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 00:42:48] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 00:42:48] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 00:42:48] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 00:42:48] 
[2026-02-09 00:42:48] 2026-02-08 23:42:11,930 | INFO     | **************************************
[2026-02-09 00:42:48] 2026-02-08 23:42:12,432 | INFO     | executing command: df -mP /tmp/job_11083558/atlas/pilot/slots/0
[2026-02-09 00:42:48] 2026-02-08 23:42:12,439 | INFO     | sufficient remaining disk space (225130315776 B)
[2026-02-09 00:42:48] 2026-02-08 23:42:12,439 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 00:42:48] 2026-02-08 23:42:12,439 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 00:42:48] 2026-02-08 23:42:12,439 | INFO     | update_server=False
[2026-02-09 00:42:48] 2026-02-08 23:42:12,439 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 00:42:48] 2026-02-08 23:42:12,440 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 00:42:48] 2026-02-08 23:42:12,514 | INFO     | all payload control threads have been joined
[2026-02-09 00:42:48] 2026-02-08 23:42:12,811 | WARNING  | process 19845 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 00:42:48] 2026-02-08 23:42:12,887 | INFO     | using path: /tmp/job_11083558/atlas/pilot/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 00:42:48] 2026-02-08 23:42:12,977 | INFO     | number of running child processes to parent process 19845: 1
[2026-02-09 00:42:48] 2026-02-08 23:42:12,977 | INFO     | maximum number of monitored processes: 6
[2026-02-09 00:42:48] 2026-02-08 23:42:12,977 | INFO     | aborting job monitoring since job object (job id=7004654711) has expired
[2026-02-09 00:42:48] 2026-02-08 23:42:12,977 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 00:42:48] 2026-02-08 23:42:12,977 | INFO     | will abort loop
[2026-02-09 00:42:48] 2026-02-08 23:42:13,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 00:42:48] 2026-02-08 23:42:13,232 | INFO     | all data control threads have been joined
[2026-02-09 00:42:48] 2026-02-08 23:42:13,445 | INFO     | [job] retrieve thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:13,445 | INFO     | [job] queue monitor thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:13,471 | INFO     | all job control threads have been joined
[2026-02-09 00:42:48] 2026-02-08 23:42:13,519 | INFO     | [payload] control thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:13,622 | INFO     | [payload] failed_post thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:13,913 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:13,982 | INFO     | [job] job monitor thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,183 | INFO     | [payload] validate_post thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,198 | INFO     | [job] validate thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,238 | INFO     | [data] control thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,294 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,376 | INFO     | [data] copytool_in thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,476 | INFO     | [job] control thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,565 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:14,657 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 00:42:48] 2026-02-08 23:42:15,133 | INFO     | [data] copytool_out thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:18,663 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:22,554 | INFO     | job.realtimelogging is not enabled
[2026-02-09 00:42:48] 2026-02-08 23:42:23,559 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 00:42:48] 2026-02-08 23:42:41,582 | INFO     | [monitor] cgroup control has ended
[2026-02-09 00:42:48] 2026-02-08 23:42:43,069 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 23456247945024)>', '<ExcThread(monitor, started 23456061089536)>']
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | INFO     | PID=2380 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | INFO     | .. there are 2 such processes running
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 00:42:48] 2026-02-08 23:42:43,572 | INFO     | [monitor] control thread has ended
[2026-02-09 00:42:48] 2026-02-08 23:42:48,094 | INFO     | all workflow threads have been joined
[2026-02-09 00:42:48] 2026-02-08 23:42:48,094 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 00:42:48] 2026-02-08 23:42:48,094 | INFO     | traces error code: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:48,094 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 00:42:48] 2026-02-08 23:42:48,146 [wrapper] ==== pilot stdout END ====
[2026-02-09 00:42:48] 2026-02-08 23:42:48,148 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 00:42:48] 2026-02-08 23:42:48,149 [wrapper] pilotpid: 2380
[2026-02-09 00:42:48] 2026-02-08 23:42:48,150 [wrapper] Pilot exit status: 0
[2026-02-09 00:42:48] 2026-02-08 23:42:48,154 [wrapper] pandaids: 7004654711
[2026-02-09 00:42:48] 2026-02-08 23:42:48,177 [wrapper] cleanup supervisor_pilot 20602 2381
[2026-02-09 00:42:48] 2026-02-08 23:42:48,179 [wrapper] Test setup, not cleaning
[2026-02-09 00:42:48] 2026-02-08 23:42:48,180 [wrapper] apfmon messages muted
[2026-02-09 00:42:48] 2026-02-08 23:42:48,181 [wrapper] ==== wrapper stdout END ====
[2026-02-09 00:42:48] 2026-02-08 23:42:48,182 [wrapper] ==== wrapper stderr END ====
[2026-02-09 00:42:48]  *** Error codes and diagnostics ***
[2026-02-09 00:42:48]     "exeErrorCode": 0,
[2026-02-09 00:42:48]     "exeErrorDiag": "",
[2026-02-09 00:42:48]     "pilotErrorCode": 0,
[2026-02-09 00:42:48]     "pilotErrorDiag": "",
[2026-02-09 00:42:48]  *** Listing of results directory ***
[2026-02-09 00:42:48] total 674072
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user    584627 Feb  8 12:49 pilot3.tar.gz
[2026-02-09 00:42:48] -rwx------ 1 mf493845 unix-user     36322 Feb  8 12:50 runpilot2-wrapper.sh
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      5111 Feb  8 12:51 queuedata.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       100 Feb  8 21:44 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 00:42:48] -rwxr-xr-x 1 mf493845 unix-user      7986 Feb  8 21:44 run_atlas
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       105 Feb  8 21:44 job.xml
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user 497617772 Feb  8 23:51 EVNT.48318032._000221.pool.root.1
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 23:51 start_atlas.sh
[2026-02-09 00:42:48] drwxrwx--x 2 mf493845 unix-user       100 Feb  8 23:51 shared
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user    597965 Feb  8 23:51 input.tar.gz
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      6390 Feb  8 23:51 init_data.xml
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user         0 Feb  8 23:51 boinc_setup_complete
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      8192 Feb  8 23:51 boinc_mmap_file
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user         0 Feb  8 23:51 boinc_lockfile
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      2538 Feb  8 23:51 pandaJob.out
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user   1009504 Feb  8 23:51 agis_schedconf.cvmfs.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user   1513088 Feb  8 23:51 agis_ddmendpoints.agis.ALL.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       420 Feb  8 23:51 workernode_map.json
[2026-02-09 00:42:48] drwx------ 5 mf493845 unix-user       440 Feb  8 23:51 pilot3
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user 187150902 Feb  9 00:41 HITS.48318034._012694.pool.root.1
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      1032 Feb  9 00:42 memory_monitor_summary.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user    304809 Feb  9 00:42 log.48318034._012694.job.log.tgz.1
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      6310 Feb  9 00:42 heartbeat.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user        95 Feb  9 00:42 pilot_heartbeat.json
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      5434 Feb  9 00:42 pilotlog.txt
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user    479400 Feb  9 00:42 log.48318034._012694.job.log.1
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       357 Feb  9 00:42 output.list
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       620 Feb  9 00:42 runtime_log
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user    798720 Feb  9 00:42 result.tar.gz
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user       641 Feb  9 00:42 WcBNDmTUI98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmjddKDm5vFYom.diag
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user      9219 Feb  9 00:42 runtime_log.err
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user     22064 Feb  9 00:42 stderr.txt
[2026-02-09 00:42:48] HITS file was successfully produced:
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user 187150902 Feb  9 00:41 shared/HITS.pool.root.1
[2026-02-09 00:42:48]  *** Contents of shared directory: ***
[2026-02-09 00:42:48] total 670104
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user 497617772 Feb  8 23:51 ATLAS.root_0
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user     15845 Feb  8 23:51 start_atlas.sh
[2026-02-09 00:42:48] -rw-r--r-- 2 mf493845 unix-user    597965 Feb  8 23:51 input.tar.gz
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user 187150902 Feb  9 00:41 HITS.pool.root.1
[2026-02-09 00:42:48] -rw------- 1 mf493845 unix-user    798720 Feb  9 00:42 result.tar.gz
00:42:49 (23113): run_atlas exited; CPU time 21878.590359
00:42:49 (23113): called boinc_finish(0)

</stderr_txt>
]]>

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