Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
07:41:51 (2144420): wrapper (7.7.26015): starting
07:41:51 (2144420): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 07:41:51] Arguments: --nthreads 4
[2026-02-09 07:41:51] Threads: 4
[2026-02-09 07:41:51] Checking for CVMFS
[2026-02-09 07:41:51] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 07:41:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 07:41:52] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 07:41:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 07:41:52] 2.9.2.0 1336220 4464 97696 156046 0 50 22444864 36864000 0 130560 0 2233911 99.986 163589 10802 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 07:41:52] CVMFS is ok
[2026-02-09 07:41:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 07:41:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 07:41:52] Further information can be found at the LHC@home message board.
[2026-02-09 07:41:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 07:41:52] Checking for apptainer binary...
[2026-02-09 07:41:52] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 07:41:52] Running /usr/bin/apptainer --version
[2026-02-09 07:41:52] apptainer version 1.4.1-1.1
[2026-02-09 07:41:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 07:41:52] madmaxA277
[2026-02-09 07:41:52] apptainer works
[2026-02-09 07:41:52] Set ATHENA_PROC_NUMBER=4
[2026-02-09 07:41:52] Set ATHENA_CORE_NUMBER=4
[2026-02-09 07:41:52] Starting ATLAS job with PandaID=6991267624
[2026-02-09 07:41:52] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 09:02:37]  *** The last 200 lines of the pilot log: ***
[2026-02-09 09:02:37] 2026-02-09 08:02:05,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 09:02:37] 2026-02-09 08:02:05,386 | INFO     | collected zombie processes
[2026-02-09 09:02:37] 2026-02-09 08:02:05,386 | INFO     | will attempt to kill all subprocesses of pid=2153039
[2026-02-09 09:02:37] 2026-02-09 08:02:05,429 | INFO     | process IDs to be killed: [2153039] (in reverse order)
[2026-02-09 09:02:37] 2026-02-09 08:02:05,462 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 09:02:37] 2026-02-09 08:02:05,462 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 09:02:37] 2026-02-09 08:02:05,463 | INFO     | did not find any defunct processes belonging to 2153039
[2026-02-09 09:02:37] 2026-02-09 08:02:05,465 | INFO     | did not find any defunct processes belonging to 2153039
[2026-02-09 09:02:37] 2026-02-09 08:02:05,465 | INFO     | ready for new job
[2026-02-09 09:02:37] 2026-02-09 08:02:05,465 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | **************************************
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | **************************************
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | 
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | architecture information:
[2026-02-09 09:02:37] 2026-02-09 08:02:05,466 | INFO     | executing command: cat /etc/os-release
[2026-02-09 09:02:37] 2026-02-09 08:02:05,480 | INFO     | cat /etc/os-release:
[2026-02-09 09:02:37] NAME="CentOS Linux"
[2026-02-09 09:02:37] VERSION="7 (Core)"
[2026-02-09 09:02:37] ID="centos"
[2026-02-09 09:02:37] ID_LIKE="rhel fedora"
[2026-02-09 09:02:37] VERSION_ID="7"
[2026-02-09 09:02:37] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 09:02:37] ANSI_COLOR="0;31"
[2026-02-09 09:02:37] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 09:02:37] HOME_URL="https://www.centos.org/"
[2026-02-09 09:02:37] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 09:02:37] 
[2026-02-09 09:02:37] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 09:02:37] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 09:02:37] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 09:02:37] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 09:02:37] 
[2026-02-09 09:02:37] 2026-02-09 08:02:05,480 | INFO     | **************************************
[2026-02-09 09:02:37] 2026-02-09 08:02:05,983 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | INFO     | sufficient remaining disk space (333150420992 B)
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | INFO     | update_server=False
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 09:02:37] 2026-02-09 08:02:05,997 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 09:02:37] 2026-02-09 08:02:06,328 | INFO     | all data control threads have been joined
[2026-02-09 09:02:37] 2026-02-09 08:02:06,451 | INFO     | all job control threads have been joined
[2026-02-09 09:02:37] 2026-02-09 08:02:06,828 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 09:02:37] 2026-02-09 08:02:06,828 | INFO     | aborting loop
[2026-02-09 09:02:37] 2026-02-09 08:02:06,838 | INFO     | all payload control threads have been joined
[2026-02-09 09:02:37] 2026-02-09 08:02:07,002 | INFO     | [job] retrieve thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,003 | INFO     | [job] queue monitor thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,064 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,122 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 09:02:37] 2026-02-09 08:02:07,267 | INFO     | [data] copytool_in thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,273 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,333 | INFO     | [data] control thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,374 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,456 | INFO     | [job] control thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,833 | INFO     | [job] job monitor thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,843 | INFO     | [payload] control thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:07,910 | INFO     | [payload] validate_post thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:08,003 | INFO     | [data] copytool_out thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:08,429 | INFO     | [job] validate thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:08,500 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:08,560 | INFO     | [monitor] cgroup control has ended
[2026-02-09 09:02:37] 2026-02-09 08:02:08,594 | INFO     | [payload] failed_post thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:11,129 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 09:02:37] 2026-02-09 08:02:11,229 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140475217442624)>', '<ExcThread(monitor, started 140474706794240)>']
[2026-02-09 09:02:37] 2026-02-09 08:02:16,255 | INFO     | all workflow threads have been joined
[2026-02-09 09:02:37] 2026-02-09 08:02:16,255 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 09:02:37] 2026-02-09 08:02:16,255 | INFO     | traces error code: 0
[2026-02-09 09:02:37] 2026-02-09 08:02:16,255 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 09:02:37] 2026-02-09 08:02:36,841 | INFO     | PID=2148533 has CPU usage=0.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 09:02:37] 2026-02-09 08:02:36,842 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 09:02:37] 2026-02-09 08:02:36,842 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 09:02:37] 2026-02-09 08:02:36,842 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 09:02:37] 2026-02-09 08:02:36,842 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 09:02:37] 2026-02-09 08:02:36,842 | INFO     | [monitor] control thread has ended
[2026-02-09 09:02:37] 2026-02-09 08:02:36,916 [wrapper] ==== pilot stdout END ====
[2026-02-09 09:02:37] 2026-02-09 08:02:36,920 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 09:02:37] 2026-02-09 08:02:36,924 [wrapper] pilotpid: 2148533
[2026-02-09 09:02:37] 2026-02-09 08:02:36,928 [wrapper] Pilot exit status: 0
[2026-02-09 09:02:37] 2026-02-09 08:02:36,939 [wrapper] pandaids: 6991267624
[2026-02-09 09:02:37] 2026-02-09 08:02:36,960 [wrapper] cleanup supervisor_pilot 2159591 2148534
[2026-02-09 09:02:37] 2026-02-09 08:02:36,964 [wrapper] Test setup, not cleaning
[2026-02-09 09:02:37] 2026-02-09 08:02:36,968 [wrapper] apfmon messages muted
[2026-02-09 09:02:37] 2026-02-09 08:02:36,972 [wrapper] ==== wrapper stdout END ====
[2026-02-09 09:02:37] 2026-02-09 08:02:36,975 [wrapper] ==== wrapper stderr END ====
[2026-02-09 09:02:37]  *** Error codes and diagnostics ***
[2026-02-09 09:02:37]     "exeErrorCode": 0,
[2026-02-09 09:02:37]     "exeErrorDiag": "",
[2026-02-09 09:02:37]     "pilotErrorCode": 0,
[2026-02-09 09:02:37]     "pilotErrorDiag": "",
[2026-02-09 09:02:37]  *** Listing of results directory ***
[2026-02-09 09:02:37] total 724540
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc    584422 Jan 31 13:07 pilot3.tar.gz
[2026-02-09 09:02:37] -rwx------ 1 boinc boinc     36322 Jan 31 13:07 runpilot2-wrapper.sh
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc      5111 Jan 31 13:12 queuedata.json
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc       100 Feb  9 07:41 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 09:02:37] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 07:41 run_atlas
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc       105 Feb  9 07:41 job.xml
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc 530615757 Feb  9 07:41 EVNT.48318024._000042.pool.root.1
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc    597768 Feb  9 07:41 input.tar.gz
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc     15845 Feb  9 07:41 start_atlas.sh
[2026-02-09 09:02:37] drwxrwx--x 2 boinc boinc      4096 Feb  9 07:41 shared
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc         0 Feb  9 07:41 boinc_setup_complete
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc      6372 Feb  9 07:41 init_data.xml
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc         0 Feb  9 07:41 boinc_lockfile
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc      2526 Feb  9 07:41 pandaJob.out
[2026-02-09 09:02:37] -rw------- 1 boinc boinc   1009504 Feb  9 07:41 agis_schedconf.cvmfs.json
[2026-02-09 09:02:37] -rw------- 1 boinc boinc   1513088 Feb  9 07:41 agis_ddmendpoints.agis.ALL.json
[2026-02-09 09:02:37] -rw------- 1 boinc boinc       431 Feb  9 07:42 workernode_map.json
[2026-02-09 09:02:37] drwx------ 5 boinc boinc      4096 Feb  9 07:42 pilot3
[2026-02-09 09:02:37] -rw------- 1 boinc boinc 205381538 Feb  9 09:01 HITS.48318026._002103.pool.root.1
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc       530 Feb  9 09:01 boinc_task_state.xml
[2026-02-09 09:02:37] -rw------- 1 boinc boinc      1021 Feb  9 09:01 memory_monitor_summary.json
[2026-02-09 09:02:37] -rw------- 1 boinc boinc    297265 Feb  9 09:01 log.48318026._002103.job.log.tgz.1
[2026-02-09 09:02:37] -rw------- 1 boinc boinc      6325 Feb  9 09:02 heartbeat.json
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc      8192 Feb  9 09:02 boinc_mmap_file
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc        27 Feb  9 09:02 wrapper_checkpoint.txt
[2026-02-09 09:02:37] -rw------- 1 boinc boinc       747 Feb  9 09:02 pilotlog.txt
[2026-02-09 09:02:37] -rw------- 1 boinc boinc        95 Feb  9 09:02 pilot_heartbeat.json
[2026-02-09 09:02:37] -rw------- 1 boinc boinc    704665 Feb  9 09:02 log.48318026._002103.job.log.1
[2026-02-09 09:02:37] -rw------- 1 boinc boinc       357 Feb  9 09:02 output.list
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc       620 Feb  9 09:02 runtime_log
[2026-02-09 09:02:37] -rw------- 1 boinc boinc   1024000 Feb  9 09:02 result.tar.gz
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc      8916 Feb  9 09:02 runtime_log.err
[2026-02-09 09:02:37] -rw------- 1 boinc boinc       661 Feb  9 09:02 r7zLDmgwO68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmeuNKDm6dCp3n.diag
[2026-02-09 09:02:37] -rw-r--r-- 1 boinc boinc     10416 Feb  9 09:02 stderr.txt
[2026-02-09 09:02:37] HITS file was successfully produced:
[2026-02-09 09:02:37] -rw------- 1 boinc boinc 205381538 Feb  9 09:01 shared/HITS.pool.root.1
[2026-02-09 09:02:37]  *** Contents of shared directory: ***
[2026-02-09 09:02:37] total 720356
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc 530615757 Feb  9 07:41 ATLAS.root_0
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc    597768 Feb  9 07:41 input.tar.gz
[2026-02-09 09:02:37] -rw-r--r-- 2 boinc boinc     15845 Feb  9 07:41 start_atlas.sh
[2026-02-09 09:02:37] -rw------- 1 boinc boinc 205381538 Feb  9 09:01 HITS.pool.root.1
[2026-02-09 09:02:37] -rw------- 1 boinc boinc   1024000 Feb  9 09:02 result.tar.gz
09:02:38 (2144420): run_atlas exited; CPU time 18159.479380
09:02:38 (2144420): called boinc_finish(0)

</stderr_txt>
]]>

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