Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
14:31:00 (484418): wrapper (7.7.26015): starting
14:31:00 (484418): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 14:31:00] Arguments: --nthreads 8
[2026-02-08 14:31:00] Threads: 8
[2026-02-08 14:31:00] Checking for CVMFS
[2026-02-08 14:31:00] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 14:31:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 14:31:01] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 14:31:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 14:31:02] 2.13.3.0 1972296 5694 130252 156031 1 89 30978602 32935937 20567 16776704 0 4817525 99.630 4865571 13590 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-08 14:31:02] CVMFS is ok
[2026-02-08 14:31:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 14:31:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 14:31:02] Further information can be found at the LHC@home message board.
[2026-02-08 14:31:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 14:31:02] Checking for apptainer binary...
[2026-02-08 14:31:02] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 14:31:02] Running /usr/bin/apptainer --version
[2026-02-08 14:31:02] apptainer version 1.4.5-2.el9
[2026-02-08 14:31:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 14:31:03] c6-12-25-2.aglt2.org
[2026-02-08 14:31:03] apptainer works
[2026-02-08 14:31:03] Set ATHENA_PROC_NUMBER=8
[2026-02-08 14:31:03] Set ATHENA_CORE_NUMBER=8
[2026-02-08 14:31:04] Starting ATLAS job with PandaID=6994679698
[2026-02-08 14:31:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 20:16:58]  *** The last 200 lines of the pilot log: ***
[2026-02-08 20:16:58] 2026-02-09 01:15:56,571 | INFO     | job 6994679698 has finished - writing final server update
[2026-02-08 20:16:58] 2026-02-09 01:15:56,572 | INFO     | total number of processed events: 400 (read)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,677 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6994679698/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,683 | INFO     | extracted standard info from prmon json
[2026-02-08 20:16:58] 2026-02-09 01:15:56,684 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 20:16:58] 2026-02-09 01:15:56,684 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 20:16:58] 2026-02-09 01:15:56,689 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 20:16:58] 2026-02-09 01:15:56,689 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 20:16:58] 2026-02-09 01:15:56,724 | INFO     | fitting pss+swap vs Time
[2026-02-08 20:16:58] 2026-02-09 01:15:56,730 | INFO     | sum of square deviations: 11761983898.55958
[2026-02-08 20:16:58] 2026-02-09 01:15:56,746 | INFO     | sum of deviations: 53842034107.27383
[2026-02-08 20:16:58] 2026-02-09 01:15:56,746 | INFO     | mean x: 1770589502.8154762
[2026-02-08 20:16:58] 2026-02-09 01:15:56,746 | INFO     | mean y: 2481075.101190476
[2026-02-08 20:16:58] 2026-02-09 01:15:56,747 | INFO     | intersect: -8102626126.435332
[2026-02-08 20:16:58] 2026-02-09 01:15:56,752 | INFO     | chi2: 4.144710740709885
[2026-02-08 20:16:58] 2026-02-09 01:15:56,754 | INFO     | sum of square deviations: 11244685598.054335
[2026-02-08 20:16:58] 2026-02-09 01:15:56,770 | INFO     | sum of deviations: 97182712393.74925
[2026-02-08 20:16:58] 2026-02-09 01:15:56,770 | INFO     | mean x: 1770589350.3202417
[2026-02-08 20:16:58] 2026-02-09 01:15:56,770 | INFO     | mean y: 2493735.6344410875
[2026-02-08 20:16:58] 2026-02-09 01:15:56,771 | INFO     | intersect: -15299906149.105843
[2026-02-08 20:16:58] 2026-02-09 01:15:56,776 | INFO     | chi2: 2.633879533535258
[2026-02-08 20:16:58] 2026-02-09 01:15:56,777 | INFO     | current chi2=2.633879533535258 (change=36.45203010996757 %)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,778 | INFO     | sum of square deviations: 10742762987.680983
[2026-02-08 20:16:58] 2026-02-09 01:15:56,789 | INFO     | sum of deviations: 95755631753.8895
[2026-02-08 20:16:58] 2026-02-09 01:15:56,790 | INFO     | mean x: 1770589197.8220859
[2026-02-08 20:16:58] 2026-02-09 01:15:56,790 | INFO     | mean y: 2493302.0153374234
[2026-02-08 20:16:58] 2026-02-09 01:15:56,790 | INFO     | intersect: -15779655797.66105
[2026-02-08 20:16:58] 2026-02-09 01:15:56,792 | INFO     | chi2: 2.634481769282797
[2026-02-08 20:16:58] 2026-02-09 01:15:56,792 | INFO     | current chi2=2.634481769282797 (change=-0.022864969330267795 %)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,792 | INFO     | right removable region: 325
[2026-02-08 20:16:58] 2026-02-09 01:15:56,794 | INFO     | sum of square deviations: 11244661807.323298
[2026-02-08 20:16:58] 2026-02-09 01:15:56,801 | INFO     | sum of deviations: -29661443442.625374
[2026-02-08 20:16:58] 2026-02-09 01:15:56,802 | INFO     | mean x: 1770589655.3141994
[2026-02-08 20:16:58] 2026-02-09 01:15:56,802 | INFO     | mean y: 2505626.1117824772
[2026-02-08 20:16:58] 2026-02-09 01:15:56,802 | INFO     | intersect: 4673010246.090321
[2026-02-08 20:16:58] 2026-02-09 01:15:56,803 | INFO     | chi2: 1.7264089725787537
[2026-02-08 20:16:58] 2026-02-09 01:15:56,804 | INFO     | current chi2=1.7264089725787537 (change=58.34669581107937 %)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,805 | INFO     | sum of square deviations: 10742715040.957153
[2026-02-08 20:16:58] 2026-02-09 01:15:56,812 | INFO     | sum of deviations: -47321547717.613495
[2026-02-08 20:16:58] 2026-02-09 01:15:56,813 | INFO     | mean x: 1770589807.8159509
[2026-02-08 20:16:58] 2026-02-09 01:15:56,813 | INFO     | mean y: 2510980.656441718
[2026-02-08 20:16:58] 2026-02-09 01:15:56,813 | INFO     | intersect: 7801940618.270413
[2026-02-08 20:16:58] 2026-02-09 01:15:56,815 | INFO     | chi2: 1.612487375789403
[2026-02-08 20:16:58] 2026-02-09 01:15:56,815 | INFO     | current chi2=1.612487375789403 (change=6.598760699163013 %)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,815 | INFO     | left removable region: 20
[2026-02-08 20:16:58] 2026-02-09 01:15:56,816 | INFO     | sum of square deviations: 8797447455.88853
[2026-02-08 20:16:58] 2026-02-09 01:15:56,823 | INFO     | sum of deviations: -13815777971.862299
[2026-02-08 20:16:58] 2026-02-09 01:15:56,823 | INFO     | mean x: 1770589777.3344262
[2026-02-08 20:16:58] 2026-02-09 01:15:56,823 | INFO     | mean y: 2528025.586885246
[2026-02-08 20:16:58] 2026-02-09 01:15:56,824 | INFO     | intersect: 2783115845.5832367
[2026-02-08 20:16:58] 2026-02-09 01:15:56,825 | INFO     | chi2: 0.030255708986046372
[2026-02-08 20:16:58] 2026-02-09 01:15:56,825 | INFO     | current memory leak: -1.57 B/s (using 305 data points, chi2=0.03)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,827 | INFO     | could have reported an average CPU frequency of 999 MHz (15 samples)
[2026-02-08 20:16:58] 2026-02-09 01:15:56,827 | INFO     | ..............................
[2026-02-08 20:16:58] 2026-02-09 01:15:56,827 | INFO     | . Timing measurements:
[2026-02-08 20:16:58] 2026-02-09 01:15:56,828 | INFO     | . get job = 0 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,828 | INFO     | . initial setup = 38 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,828 | INFO     | . payload setup = 52 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,828 | INFO     | . stage-in = 1 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,828 | INFO     | . payload execution = 20498 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,829 | INFO     | . stage-out = 4 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,829 | INFO     | . log creation = 0 s
[2026-02-08 20:16:58] 2026-02-09 01:15:56,829 | INFO     | ..............................
[2026-02-08 20:16:58] 2026-02-09 01:15:57,101 | INFO     | 
[2026-02-08 20:16:58] 2026-02-09 01:15:57,102 | INFO     | job summary report
[2026-02-08 20:16:58] 2026-02-09 01:15:57,102 | INFO     | --------------------------------------------------
[2026-02-08 20:16:58] 2026-02-09 01:15:57,102 | INFO     | PanDA job id: 6994679698
[2026-02-08 20:16:58] 2026-02-09 01:15:57,102 | INFO     | task id: 48310589
[2026-02-08 20:16:58] 2026-02-09 01:15:57,103 | INFO     | errors: (none)
[2026-02-08 20:16:58] 2026-02-09 01:15:57,103 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 20:16:58] 2026-02-09 01:15:57,103 | INFO     | pilot state: finished 
[2026-02-08 20:16:58] 2026-02-09 01:15:57,103 | INFO     | transexitcode: 0
[2026-02-08 20:16:58] 2026-02-09 01:15:57,103 | INFO     | exeerrorcode: 0
[2026-02-08 20:16:58] 2026-02-09 01:15:57,104 | INFO     | exeerrordiag: 
[2026-02-08 20:16:58] 2026-02-09 01:15:57,104 | INFO     | exitcode: 0
[2026-02-08 20:16:58] 2026-02-09 01:15:57,104 | INFO     | exitmsg: OK
[2026-02-08 20:16:58] 2026-02-09 01:15:57,104 | INFO     | cpuconsumptiontime: 99313 s
[2026-02-08 20:16:58] 2026-02-09 01:15:57,104 | INFO     | nevents: 400
[2026-02-08 20:16:58] 2026-02-09 01:15:57,105 | INFO     | neventsw: 0
[2026-02-08 20:16:58] 2026-02-09 01:15:57,105 | INFO     | pid: 495813
[2026-02-08 20:16:58] 2026-02-09 01:15:57,105 | INFO     | pgrp: 495813
[2026-02-08 20:16:58] 2026-02-09 01:15:57,105 | INFO     | corecount: 8
[2026-02-08 20:16:58] 2026-02-09 01:15:57,106 | INFO     | event service: False
[2026-02-08 20:16:58] 2026-02-09 01:15:57,106 | INFO     | sizes: {0: 2282003, 1: 2282688, 2: 2282688, 3: 2253081, 5: 2253081, 6: 2283205, 7: 2283361, 18: 2283389, 20556: 2316690, 20557: 2316689, 20562: 2325743, 20563: 232
[2026-02-08 20:16:58] 2026-02-09 01:15:57,106 | INFO     | --------------------------------------------------
[2026-02-08 20:16:58] 2026-02-09 01:15:57,106 | INFO     | 
[2026-02-08 20:16:58] 2026-02-09 01:15:57,107 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2026-02-08 20:16:58] 2026-02-09 01:15:57,384 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,385 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,385 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,385 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,385 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,386 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,386 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,386 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,386 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,386 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,387 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,387 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,387 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,387 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,388 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,388 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,388 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,388 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 20:16:58] 2026-02-09 01:15:57,388 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,389 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 20:16:58] 2026-02-09 01:15:57,389 | INFO     | job 6994679698 has completed (purged errors)
[2026-02-08 20:16:58] 2026-02-09 01:15:57,389 | INFO     | overall cleanup function is called
[2026-02-08 20:16:58] 2026-02-09 01:15:58,409 | INFO     | --- collectZombieJob: --- 10, [495813]
[2026-02-08 20:16:58] 2026-02-09 01:15:58,410 | INFO     | zombie collector waiting for pid 495813
[2026-02-08 20:16:58] 2026-02-09 01:15:58,410 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 20:16:58] 2026-02-09 01:15:58,410 | INFO     | collected zombie processes
[2026-02-08 20:16:58] 2026-02-09 01:15:58,410 | INFO     | will attempt to kill all subprocesses of pid=495813
[2026-02-08 20:16:58] 2026-02-09 01:15:59,170 | INFO     | PID=489911 has CPU usage=28.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 20:16:58] 2026-02-09 01:15:59,171 | INFO     | .. there are 15 such processes running
[2026-02-08 20:16:58] 2026-02-09 01:16:00,007 | INFO     | process IDs to be killed: [495813] (in reverse order)
[2026-02-08 20:16:58] 2026-02-09 01:16:00,623 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 20:16:58] 2026-02-09 01:16:00,628 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 20:16:58] 2026-02-09 01:16:00,695 | INFO     | did not find any defunct processes belonging to 495813
[2026-02-08 20:16:58] 2026-02-09 01:16:00,769 | INFO     | did not find any defunct processes belonging to 495813
[2026-02-08 20:16:58] 2026-02-09 01:16:00,774 | INFO     | ready for new job
[2026-02-08 20:16:58] 2026-02-09 01:16:00,774 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 20:16:58] 2026-02-09 01:16:00,783 | INFO     | **************************************
[2026-02-08 20:16:58] 2026-02-09 01:16:00,784 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-08 20:16:58] 2026-02-09 01:16:00,784 | INFO     | **************************************
[2026-02-08 20:16:58] 2026-02-09 01:16:00,784 | INFO     | 
[2026-02-08 20:16:58] 2026-02-09 01:16:00,815 | INFO     | architecture information:
[2026-02-08 20:16:58] 2026-02-09 01:16:00,819 | INFO     | executing command: cat /etc/os-release
[2026-02-08 20:16:58] 2026-02-09 01:16:00,903 | INFO     | cat /etc/os-release:
[2026-02-08 20:16:58] NAME="CentOS Linux"
[2026-02-08 20:16:58] VERSION="7 (Core)"
[2026-02-08 20:16:58] ID="centos"
[2026-02-08 20:16:58] ID_LIKE="rhel fedora"
[2026-02-08 20:16:58] VERSION_ID="7"
[2026-02-08 20:16:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 20:16:58] ANSI_COLOR="0;31"
[2026-02-08 20:16:58] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 20:16:58] HOME_URL="https://www.centos.org/"
[2026-02-08 20:16:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 20:16:58] 
[2026-02-08 20:16:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 20:16:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 20:16:58] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 20:16:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 20:16:58] 
[2026-02-08 20:16:58] 2026-02-09 01:16:00,903 | INFO     | **************************************
[2026-02-08 20:16:58] 2026-02-09 01:16:01,408 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2026-02-08 20:16:58] 2026-02-09 01:16:01,537 | INFO     | sufficient remaining disk space (85569044480 B)
[2026-02-08 20:16:58] 2026-02-09 01:16:01,538 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 20:16:58] 2026-02-09 01:16:01,538 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 20:16:58] 2026-02-09 01:16:01,538 | INFO     | update_server=False
[2026-02-08 20:16:58] 2026-02-09 01:16:01,539 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 20:16:58] 2026-02-09 01:16:01,542 | INFO     | all data control threads have been joined
[2026-02-08 20:16:58] 2026-02-09 01:16:01,675 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 20:16:58] 2026-02-09 01:16:01,751 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 20:16:58] 2026-02-09 01:16:01,752 | INFO     | aborting loop
[2026-02-08 20:16:58] 2026-02-09 01:16:02,134 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 20:16:58] 2026-02-09 01:16:02,545 | INFO     | [job] retrieve thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,549 | INFO     | [data] control thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,753 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,758 | INFO     | [job] job monitor thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,766 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,766 | INFO     | [job] validate thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:02,862 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 20:16:58] 2026-02-09 01:16:02,995 | INFO     | all job control threads have been joined
[2026-02-08 20:16:58] 2026-02-09 01:16:03,020 | INFO     | all payload control threads have been joined
[2026-02-08 20:16:58] 2026-02-09 01:16:03,141 | INFO     | [job] queue monitor thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:03,208 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:03,208 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:03,260 | INFO     | [data] copytool_in thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:03,493 | INFO     | [payload] failed_post thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:03,538 | INFO     | [payload] validate_post thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:04,001 | INFO     | [job] control thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:04,026 | INFO     | [payload] control thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:04,869 | INFO     | [data] copytool_out thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:05,684 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 20:16:58] 2026-02-09 01:16:29,608 | INFO     | [monitor] cgroup control has ended
[2026-02-08 20:16:58] 2026-02-09 01:16:31,192 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139641721866048)>', '<ExcThread(monitor, started 139641374099200)>']
[2026-02-08 20:16:58] 2026-02-09 01:16:33,472 | INFO     | PID=489911 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-08 20:16:58] 2026-02-09 01:16:33,473 | INFO     | .. there are 15 such processes running
[2026-02-08 20:16:58] 2026-02-09 01:16:33,473 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 20:16:58] 2026-02-09 01:16:33,473 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 20:16:58] 2026-02-09 01:16:33,474 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 20:16:58] 2026-02-09 01:16:33,474 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 20:16:58] 2026-02-09 01:16:33,474 | INFO     | [monitor] control thread has ended
[2026-02-08 20:16:58] 2026-02-09 01:16:36,218 | INFO     | all workflow threads have been joined
[2026-02-08 20:16:58] 2026-02-09 01:16:36,219 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 20:16:58] 2026-02-09 01:16:36,219 | INFO     | traces error code: 0
[2026-02-08 20:16:58] 2026-02-09 01:16:36,220 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 20:16:58] 2026-02-09 01:16:36,535 [wrapper] ==== pilot stdout END ====
[2026-02-08 20:16:58] 2026-02-09 01:16:36,573 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 20:16:58] 2026-02-09 01:16:36,670 [wrapper] pilotpid: 489911
[2026-02-08 20:16:58] 2026-02-09 01:16:36,700 [wrapper] Pilot exit status: 0
[2026-02-08 20:16:58] 2026-02-09 01:16:36,904 [wrapper] pandaids: 6994679698
[2026-02-08 20:16:58] 2026-02-09 01:16:37,465 [wrapper] cleanup supervisor_pilot 1136391 489912
[2026-02-08 20:16:58] 2026-02-09 01:16:37,484 [wrapper] Test setup, not cleaning
[2026-02-08 20:16:58] 2026-02-09 01:16:37,506 [wrapper] apfmon messages muted
[2026-02-08 20:16:58] 2026-02-09 01:16:37,528 [wrapper] ==== wrapper stdout END ====
[2026-02-08 20:16:58] 2026-02-09 01:16:37,550 [wrapper] ==== wrapper stderr END ====
[2026-02-08 20:16:58]  *** Error codes and diagnostics ***
[2026-02-08 20:16:58]     "exeErrorCode": 0,
[2026-02-08 20:16:58]     "exeErrorDiag": "",
[2026-02-08 20:16:58]     "pilotErrorCode": 0,
[2026-02-08 20:16:58]     "pilotErrorDiag": "",
[2026-02-08 20:16:58]  *** Listing of results directory ***
[2026-02-08 20:16:58] total 669560
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas      5111 Jan 31 08:56 queuedata.json
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas    584422 Jan 31 08:56 pilot3.tar.gz
[2026-02-08 20:16:58] -rwx------. 1 boincer umatlas     36322 Jan 31 08:56 runpilot2-wrapper.sh
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas       100 Feb  8 14:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 20:16:58] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  8 14:30 run_atlas
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas       105 Feb  8 14:30 job.xml
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas 491746123 Feb  8 14:31 EVNT.48310585._000155.pool.root.1
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 14:31 start_atlas.sh
[2026-02-08 20:16:58] drwxrwx--x. 2 boincer umatlas      4096 Feb  8 14:31 shared
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas    597761 Feb  8 14:31 input.tar.gz
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas         0 Feb  8 14:31 boinc_lockfile
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas      2528 Feb  8 14:31 pandaJob.out
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas        57 Feb  8 14:31 setup.sh.local
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas   1009496 Feb  8 14:32 agis_schedconf.cvmfs.json
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas       443 Feb  8 14:32 workernode_map.json
[2026-02-08 20:16:58] drwx------. 5 boincer umatlas      4096 Feb  8 14:32 pilot3
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas      6858 Feb  8 20:10 init_data.xml
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas 183993846 Feb  8 20:14 HITS.48310589._008092.pool.root.1
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas       532 Feb  8 20:14 boinc_task_state.xml
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas      1038 Feb  8 20:15 memory_monitor_summary.json
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas        95 Feb  8 20:15 pilot_heartbeat.json
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas   1513088 Feb  8 20:15 agis_ddmendpoints.agis.ALL.json
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas    517137 Feb  8 20:15 log.48310589._008092.job.log.tgz.1
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas      6390 Feb  8 20:15 heartbeat.json
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas      4819 Feb  8 20:16 pilotlog.txt
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas   2451755 Feb  8 20:16 log.48310589._008092.job.log.1
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas       357 Feb  8 20:16 output.list
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas       620 Feb  8 20:16 runtime_log
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas   2990080 Feb  8 20:16 result.tar.gz
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas      9352 Feb  8 20:16 runtime_log.err
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas       661 Feb  8 20:16 bHPNDm9dQ68n9Rq4apOajLDm4fhM0noT9bVooX4SDmnhNKDmQEaiRo.diag
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas      8192 Feb  8 20:16 boinc_mmap_file
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas     21279 Feb  8 20:16 stderr.txt
[2026-02-08 20:16:58] -rw-r--r--. 1 boincer umatlas        29 Feb  8 20:16 wrapper_checkpoint.txt
[2026-02-08 20:16:58] HITS file was successfully produced:
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas 183993846 Feb  8 20:14 shared/HITS.pool.root.1
[2026-02-08 20:16:58]  *** Contents of shared directory: ***
[2026-02-08 20:16:58] total 663436
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas 491746123 Feb  8 14:31 ATLAS.root_0
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 14:31 start_atlas.sh
[2026-02-08 20:16:58] -rw-r--r--. 2 boincer umatlas    597761 Feb  8 14:31 input.tar.gz
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas 183993846 Feb  8 20:14 HITS.pool.root.1
[2026-02-08 20:16:58] -rw-------. 1 boincer umatlas   2990080 Feb  8 20:16 result.tar.gz
20:17:00 (484418): run_atlas exited; CPU time 101197.215535
20:17:00 (484418): called boinc_finish(0)

</stderr_txt>
]]>

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