Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:26:49 (973422): wrapper (7.7.26015): starting
06:26:49 (973422): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 06:26:49] Arguments: --nthreads 3
[2026-02-09 06:26:49] Threads: 3
[2026-02-09 06:26:49] Checking for CVMFS
[2026-02-09 06:26:49] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 06:26:50] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 06:26:50] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 06:26:50] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 06:26:50] 2.9.2.0 354081 4121 80896 156045 2 50 25219670 36864001 0 130560 0 1764998 99.984 150797 12376 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 06:26:50] CVMFS is ok
[2026-02-09 06:26:50] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 06:26:50] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 06:26:50] Further information can be found at the LHC@home message board.
[2026-02-09 06:26:50] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 06:26:50] Checking for apptainer binary...
[2026-02-09 06:26:50] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 06:26:50] Running /usr/bin/apptainer --version
[2026-02-09 06:26:50] apptainer version 1.4.1-1.1
[2026-02-09 06:26:50] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 06:26:50] thA305b
[2026-02-09 06:26:50] apptainer works
[2026-02-09 06:26:50] Set ATHENA_PROC_NUMBER=3
[2026-02-09 06:26:50] Set ATHENA_CORE_NUMBER=3
[2026-02-09 06:26:50] Starting ATLAS job with PandaID=6991150552
[2026-02-09 06:26:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 07:57:14]  *** The last 200 lines of the pilot log: ***
[2026-02-09 07:57:14] 2026-02-09 06:56:11,175 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 07:57:14] 2026-02-09 06:56:11,175 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 07:57:14] 2026-02-09 06:56:11,175 | INFO     | job 6991150552 has completed (purged errors)
[2026-02-09 07:57:14] 2026-02-09 06:56:11,175 | INFO     | overall cleanup function is called
[2026-02-09 07:57:14] 2026-02-09 06:56:11,379 | INFO     | PID=977464 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 07:57:14] 2026-02-09 06:56:12,182 | INFO     | --- collectZombieJob: --- 10, [981897]
[2026-02-09 07:57:14] 2026-02-09 06:56:12,182 | INFO     | zombie collector waiting for pid 981897
[2026-02-09 07:57:14] 2026-02-09 06:56:12,182 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 07:57:14] 2026-02-09 06:56:12,182 | INFO     | collected zombie processes
[2026-02-09 07:57:14] 2026-02-09 06:56:12,182 | INFO     | will attempt to kill all subprocesses of pid=981897
[2026-02-09 07:57:14] 2026-02-09 06:56:12,223 | INFO     | process IDs to be killed: [981897] (in reverse order)
[2026-02-09 07:57:14] 2026-02-09 06:56:12,248 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 07:57:14] 2026-02-09 06:56:12,248 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 07:57:14] 2026-02-09 06:56:12,249 | INFO     | did not find any defunct processes belonging to 981897
[2026-02-09 07:57:14] 2026-02-09 06:56:12,250 | INFO     | did not find any defunct processes belonging to 981897
[2026-02-09 07:57:14] 2026-02-09 06:56:12,250 | INFO     | ready for new job
[2026-02-09 07:57:14] 2026-02-09 06:56:12,250 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | **************************************
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | **************************************
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | 
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | architecture information:
[2026-02-09 07:57:14] 2026-02-09 06:56:12,251 | INFO     | executing command: cat /etc/os-release
[2026-02-09 07:57:14] 2026-02-09 06:56:12,260 | INFO     | cat /etc/os-release:
[2026-02-09 07:57:14] NAME="CentOS Linux"
[2026-02-09 07:57:14] VERSION="7 (Core)"
[2026-02-09 07:57:14] ID="centos"
[2026-02-09 07:57:14] ID_LIKE="rhel fedora"
[2026-02-09 07:57:14] VERSION_ID="7"
[2026-02-09 07:57:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 07:57:14] ANSI_COLOR="0;31"
[2026-02-09 07:57:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 07:57:14] HOME_URL="https://www.centos.org/"
[2026-02-09 07:57:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 07:57:14] 
[2026-02-09 07:57:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 07:57:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 07:57:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 07:57:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 07:57:14] 
[2026-02-09 07:57:14] 2026-02-09 06:56:12,261 | INFO     | **************************************
[2026-02-09 07:57:14] 2026-02-09 06:56:12,764 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | INFO     | sufficient remaining disk space (175951052800 B)
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | INFO     | update_server=False
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 07:57:14] 2026-02-09 06:56:12,777 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 07:57:14] 2026-02-09 06:56:12,778 | INFO     | aborting loop
[2026-02-09 07:57:14] 2026-02-09 06:56:12,853 | INFO     | all data control threads have been joined
[2026-02-09 07:57:14] 2026-02-09 06:56:13,472 | INFO     | all job control threads have been joined
[2026-02-09 07:57:14] 2026-02-09 06:56:13,668 | INFO     | all payload control threads have been joined
[2026-02-09 07:57:14] 2026-02-09 06:56:13,783 | INFO     | [job] retrieve thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:13,783 | INFO     | [job] queue monitor thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:13,783 | INFO     | [job] job monitor thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:13,859 | INFO     | [data] control thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:13,928 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 07:57:14] 2026-02-09 06:56:14,282 | INFO     | [payload] validate_post thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,335 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,420 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 07:57:14] 2026-02-09 06:56:14,478 | INFO     | [job] control thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,660 | INFO     | [payload] failed_post thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,674 | INFO     | [payload] control thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,760 | INFO     | [job] validate thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,778 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,822 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:14,972 | INFO     | [data] copytool_in thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:15,265 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:15,935 | INFO     | [data] copytool_out thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:18,427 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 07:57:14] 2026-02-09 06:56:43,504 | INFO     | PID=977464 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 07:57:14] 2026-02-09 06:56:43,504 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 07:57:14] 2026-02-09 06:56:43,505 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 07:57:14] 2026-02-09 06:56:43,505 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 07:57:14] 2026-02-09 06:56:57,542 [wrapper] supervise_pilot (15 min periods counter: 7)
[2026-02-09 07:57:14] 2026-02-09 06:57:07,878 | INFO     | [monitor] cgroup control has ended
[2026-02-09 07:57:14] 2026-02-09 06:57:09,394 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139966804342592)>', '<ExcThread(monitor, started 139965795133184)>']
[2026-02-09 07:57:14] 2026-02-09 06:57:09,644 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 07:57:14] 2026-02-09 06:57:09,644 | INFO     | [monitor] control thread has ended
[2026-02-09 07:57:14] 2026-02-09 06:57:14,420 | INFO     | all workflow threads have been joined
[2026-02-09 07:57:14] 2026-02-09 06:57:14,420 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 07:57:14] 2026-02-09 06:57:14,420 | INFO     | traces error code: 0
[2026-02-09 07:57:14] 2026-02-09 06:57:14,421 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 07:57:14] 2026-02-09 06:57:14,471 [wrapper] ==== pilot stdout END ====
[2026-02-09 07:57:14] 2026-02-09 06:57:14,474 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 07:57:14] 2026-02-09 06:57:14,476 [wrapper] pilotpid: 977464
[2026-02-09 07:57:14] 2026-02-09 06:57:14,479 [wrapper] Pilot exit status: 0
[2026-02-09 07:57:14] 2026-02-09 06:57:14,486 [wrapper] pandaids: 6991150552
[2026-02-09 07:57:14] 2026-02-09 06:57:14,504 [wrapper] cleanup supervisor_pilot  988166 977465
[2026-02-09 07:57:14] 2026-02-09 06:57:14,507 [wrapper] Test setup, not cleaning
[2026-02-09 07:57:14] 2026-02-09 06:57:14,510 [wrapper] apfmon messages muted
[2026-02-09 07:57:14] 2026-02-09 06:57:14,512 [wrapper] ==== wrapper stdout END ====
[2026-02-09 07:57:14] 2026-02-09 06:57:14,514 [wrapper] ==== wrapper stderr END ====
[2026-02-09 07:57:14]  *** Error codes and diagnostics ***
[2026-02-09 07:57:14]     "exeErrorCode": 0,
[2026-02-09 07:57:14]     "exeErrorDiag": "",
[2026-02-09 07:57:14]     "pilotErrorCode": 0,
[2026-02-09 07:57:14]     "pilotErrorDiag": "",
[2026-02-09 07:57:14]  *** Listing of results directory ***
[2026-02-09 07:57:14] total 676580
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc    584422 Jan 31 13:07 pilot3.tar.gz
[2026-02-09 07:57:14] -rwx------ 1 boinc boinc     36322 Jan 31 13:08 runpilot2-wrapper.sh
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc      5111 Jan 31 13:12 queuedata.json
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc       100 Feb  9 06:26 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 07:57:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 06:26 run_atlas
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc       105 Feb  9 06:26 job.xml
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc 497940435 Feb  9 06:26 EVNT.48318040._000106.pool.root.1
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc    597762 Feb  9 06:26 input.tar.gz
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc     15845 Feb  9 06:26 start_atlas.sh
[2026-02-09 07:57:14] drwxrwx--x 2 boinc boinc      4096 Feb  9 06:26 shared
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc         0 Feb  9 06:26 boinc_setup_complete
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc      6447 Feb  9 06:26 init_data.xml
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc         0 Feb  9 06:26 boinc_lockfile
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc      2535 Feb  9 06:26 pandaJob.out
[2026-02-09 07:57:14] -rw------- 1 boinc boinc   1009512 Feb  9 06:26 agis_schedconf.cvmfs.json
[2026-02-09 07:57:14] -rw------- 1 boinc boinc   1513088 Feb  9 06:26 agis_ddmendpoints.agis.ALL.json
[2026-02-09 07:57:14] -rw------- 1 boinc boinc       415 Feb  9 06:27 workernode_map.json
[2026-02-09 07:57:14] drwx------ 5 boinc boinc      4096 Feb  9 06:27 pilot3
[2026-02-09 07:57:14] -rw------- 1 boinc boinc 188877843 Feb  9 07:55 HITS.48318042._005520.pool.root.1
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc       530 Feb  9 07:55 boinc_task_state.xml
[2026-02-09 07:57:14] -rw------- 1 boinc boinc      1030 Feb  9 07:56 memory_monitor_summary.json
[2026-02-09 07:57:14] -rw------- 1 boinc boinc    254307 Feb  9 07:56 log.48318042._005520.job.log.tgz.1
[2026-02-09 07:57:14] -rw------- 1 boinc boinc      6290 Feb  9 07:56 heartbeat.json
[2026-02-09 07:57:14] -rw------- 1 boinc boinc        95 Feb  9 07:56 pilot_heartbeat.json
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc        27 Feb  9 07:56 wrapper_checkpoint.txt
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc      8192 Feb  9 07:56 boinc_mmap_file
[2026-02-09 07:57:14] -rw------- 1 boinc boinc      4747 Feb  9 07:57 pilotlog.txt
[2026-02-09 07:57:14] -rw------- 1 boinc boinc    778062 Feb  9 07:57 log.48318042._005520.job.log.1
[2026-02-09 07:57:14] -rw------- 1 boinc boinc       357 Feb  9 07:57 output.list
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc       620 Feb  9 07:57 runtime_log
[2026-02-09 07:57:14] -rw------- 1 boinc boinc   1054720 Feb  9 07:57 result.tar.gz
[2026-02-09 07:57:14] -rw------- 1 boinc boinc       658 Feb  9 07:57 uncLDmswO68nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmuwNKDmxGnNRn.diag
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc      8901 Feb  9 07:57 runtime_log.err
[2026-02-09 07:57:14] -rw-r--r-- 1 boinc boinc     11326 Feb  9 07:57 stderr.txt
[2026-02-09 07:57:14] HITS file was successfully produced:
[2026-02-09 07:57:14] -rw------- 1 boinc boinc 188877843 Feb  9 07:55 shared/HITS.pool.root.1
[2026-02-09 07:57:14]  *** Contents of shared directory: ***
[2026-02-09 07:57:14] total 672364
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc 497940435 Feb  9 06:26 ATLAS.root_0
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc    597762 Feb  9 06:26 input.tar.gz
[2026-02-09 07:57:14] -rw-r--r-- 2 boinc boinc     15845 Feb  9 06:26 start_atlas.sh
[2026-02-09 07:57:14] -rw------- 1 boinc boinc 188877843 Feb  9 07:55 HITS.pool.root.1
[2026-02-09 07:57:14] -rw------- 1 boinc boinc   1054720 Feb  9 07:57 result.tar.gz
07:57:16 (973422): run_atlas exited; CPU time 15388.104532
07:57:16 (973422): called boinc_finish(0)

</stderr_txt>
]]>

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