Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2026-02-08 18:10:43 (5644): vboxwrapper version 26210
2026-02-08 18:10:43 (5644): BOINC client version: 8.2.4
2026-02-08 18:10:43 (5644): Detected: VirtualBox VboxManage Interface (Version: 7.1.4)
2026-02-08 18:10:44 (5644): Successfully copied 'init_data.xml' to the shared directory.
2026-02-08 18:10:44 (5644): Create VM. (boinc_b716dd5d948cf369, slot#1)
2026-02-08 18:10:44 (5644): Setting Memory Size for VM. (4800MB)
2026-02-08 18:10:45 (5644): Setting CPU Count for VM. (8)
2026-02-08 18:10:45 (5644): Setting Chipset Options for VM.
2026-02-08 18:10:45 (5644): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2026-02-08 18:10:45 (5644): Setting Boot Options for VM.
2026-02-08 18:10:46 (5644): Setting Network Configuration for NAT. (Driver: virtio)
2026-02-08 18:10:46 (5644): Enabling VM Network Access.
2026-02-08 18:10:46 (5644): Disabling USB Support for VM.
2026-02-08 18:10:47 (5644): Disabling COM Port Support for VM.
2026-02-08 18:10:47 (5644): Disabling LPT Port Support for VM.
2026-02-08 18:10:47 (5644): Disabling Audio Support for VM.
2026-02-08 18:10:47 (5644): Disabling Clipboard Support for VM.
2026-02-08 18:10:48 (5644): Disabling Drag and Drop Support for VM.
2026-02-08 18:10:48 (5644): Adding storage controller(s) to VM.
2026-02-08 18:10:48 (5644): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2026-02-08 18:10:49 (5644): Adding VirtualBox Guest Additions to VM.
2026-02-08 18:10:49 (5644): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2026-02-08 18:10:49 (5644): forwarding host port 61203 to guest port 80
2026-02-08 18:10:50 (5644): Enabling remote desktop for VM.
2026-02-08 18:10:50 (5644): Required extension pack not installed, remote desktop not enabled.
2026-02-08 18:10:50 (5644): Enabling shared directory for VM.
2026-02-08 18:10:50 (5644): Starting VM using VBoxManage interface. (boinc_b716dd5d948cf369, slot#1)
2026-02-08 18:10:58 (5644): Successfully started VM. (PID = '3752')
2026-02-08 18:10:58 (5644): Reporting VM Process ID to BOINC.
2026-02-08 18:10:58 (5644): Guest Log: BIOS: VirtualBox 7.1.4
2026-02-08 18:10:58 (5644): Guest Log: CPUID EDX: 0x178bfbff
2026-02-08 18:10:58 (5644): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2026-02-08 18:10:58 (5644): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2026-02-08 18:10:58 (5644): VM state change detected. (old = 'poweredoff', new = 'running')
2026-02-08 18:10:58 (5644): Detected: Web Application Enabled (http://localhost:61203)
2026-02-08 18:10:58 (5644): Preference change detected
2026-02-08 18:10:58 (5644): Setting CPU throttle for VM. (100%)
2026-02-08 18:10:59 (5644): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 300 seconds) or (Vbox_job.xml: 900 seconds))
2026-02-08 18:11:00 (5644): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2026-02-08 18:11:00 (5644): Guest Log: BIOS: Booting from Hard Disk...
2026-02-08 18:11:04 (5644): Guest Log: BIOS: KBD: unsupported int 16h function 03
2026-02-08 18:11:04 (5644): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2026-02-08 18:11:04 (5644): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2026-02-08 18:11:14 (5644): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2026-02-08 18:11:14 (5644): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2026-02-08 18:11:29 (5644): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000228 main     Log opened 2026-02-08T18:11:27.622515000Z
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000572 main     OS Product: Linux
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000653 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000720 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000799 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000802 main     Process ID: 1379
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.000804 main     Package type: LINUX_64BITS_GENERIC
2026-02-08 18:11:29 (5644): Guest Log: 00:00:00.002958 main     5.2.32 r132073 started. Verbose level = 0
2026-02-08 18:11:29 (5644): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2026-02-08 18:11:29 (5644): Guest Log: [INFO] Mounting shared directory
2026-02-08 18:11:29 (5644): Guest Log: [INFO] Checking for init_data.xml
2026-02-08 18:11:39 (5644): Guest Log: 00:00:10.007422 timesync vgsvcTimeSyncWorker: Radical guest time change: -3 588 137 766 000ns (GuestNow=1 770 570 699 490 934 000 ns GuestLast=1 770 574 287 628 700 000 ns fSetTimeLastLoop=true )
2026-02-08 18:11:46 (5644): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2026-02-08 18:11:46 (5644): Guest Log: [INFO] Detected branch: prod
2026-02-08 18:11:47 (5644): Guest Log: This is the prod version of the ATLAS job wrapper
2026-02-08 18:11:47 (5644): Guest Log: Copying input files
2026-02-08 18:11:54 (5644): Guest Log: Copied input files into RunAtlas.
2026-02-08 18:11:54 (5644): Guest Log: This VM did not configure a local http proxy via BOINC.
2026-02-08 18:11:54 (5644): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2026-02-08 18:11:54 (5644): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2026-02-08 18:11:54 (5644): Guest Log: Further information can be found at the LHC@home message board.
2026-02-08 18:12:06 (5644): Guest Log: Running cvmfs_config stat atlas.cern.ch
2026-02-08 18:12:07 (5644): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2026-02-08 18:12:07 (5644): Guest Log: 2.6.3.0 1659 0 32180 156027 4 1 3117739 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2026-02-08 18:12:08 (5644): Guest Log: copied the webapp to /var/www
2026-02-08 18:12:08 (5644): Guest Log: ATHENA_PROC_NUMBER=8
2026-02-08 18:12:08 (5644): Guest Log: ATHENA_CORE_NUMBER=8
2026-02-08 18:12:08 (5644): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2026-02-08 18:12:08 (5644): Guest Log:  *** Starting ATLAS job. (PandaID=7004478064 taskID=48442031) ***
2026-02-08 19:51:04 (5644): Status Report: Elapsed Time: '6000.000000'
2026-02-08 19:51:04 (5644): Status Report: CPU Time: '35903.796875'
2026-02-08 21:31:09 (5644): Status Report: Elapsed Time: '12000.000000'
2026-02-08 21:31:09 (5644): Status Report: CPU Time: '81382.328125'
2026-02-08 23:05:07 (5644): Guest Log:  *** Job finished ***
2026-02-08 23:05:07 (5644): Guest Log:  *** The last 20 lines of the pilot log: ***
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:44,924 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:44,925 | WARNING  | will wait for a maximum of 300 s for threads to finish
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:56,635 | INFO     | [monitor] cgroup control has ended
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:58,710 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140338300430144)>', '<ExcThread(monitor, started 140337628563200)>']
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:59,127 | WARNING  | job_aborted has been set - aborting pilot monitoring
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:04:59,127 | INFO     | [monitor] control thread has ended
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,722 | INFO     | all workflow threads have been joined
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,723 | INFO     | end of generic workflow (traces error code: 0)
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,723 | INFO     | traces error code: 0
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,724 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,910 [wrapper] ==== pilot stdout END ====
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,922 [wrapper] ==== wrapper stdout RESUME ====
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,932 [wrapper] pilotpid: 6115
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:03,943 [wrapper] Pilot exit status: 0
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,109 [wrapper] pandaids: 7004478064
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,192 [wrapper] cleanup supervisor_pilot 29393 6116
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,204 [wrapper] Test setup, not cleaning
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,215 [wrapper] apfmon messages muted
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,225 [wrapper] ==== wrapper stdout END ====
2026-02-08 23:05:07 (5644): Guest Log: 2026-02-08 22:05:04,237 [wrapper] ==== wrapper stderr END ====
2026-02-08 23:05:07 (5644): Guest Log:  *** Error codes and diagnostics ***
2026-02-08 23:05:07 (5644): Guest Log:     "exeErrorCode": 0,
2026-02-08 23:05:07 (5644): Guest Log:     "exeErrorDiag": "",
2026-02-08 23:05:07 (5644): Guest Log:     "pilotErrorCode": 0,
2026-02-08 23:05:07 (5644): Guest Log:     "pilotErrorDiag": "",
2026-02-08 23:05:07 (5644): Guest Log:  *** Listing of results directory ***
2026-02-08 23:05:07 (5644): Guest Log: total 183136
2026-02-08 23:05:07 (5644): Guest Log: -rw-r--r--. 1 atlas atlas    584627 Feb  8 09:40 pilot3.tar.gz
2026-02-08 23:05:07 (5644): Guest Log: -rwx------. 1 atlas atlas     36322 Feb  8 09:43 runpilot2-wrapper.sh
2026-02-08 23:05:07 (5644): Guest Log: -rw-r--r--. 1 atlas atlas      5111 Feb  8 09:46 queuedata.json
2026-02-08 23:05:07 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas      5954 Feb  8 17:11 init_data.xml
2026-02-08 23:05:07 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas    597953 Feb  8 17:11 input.tar.gz
2026-02-08 23:05:07 (5644): Guest Log: -rwxr-xr-x. 1 atlas atlas     15845 Feb  8 17:11 start_atlas.sh
2026-02-08 23:05:07 (5644): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Feb  8 17:11 EVNT.48442027._000176.pool.root.1 -> /data/./ATLAS.root_0
2026-02-08 23:05:07 (5644): Guest Log: -rw-r--r--. 1 atlas atlas      2528 Feb  8 17:12 pandaJob.out
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas   1009488 Feb  8 17:13 agis_schedconf.cvmfs.json
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas       422 Feb  8 17:13 workernode_map.json
2026-02-08 23:05:07 (5644): Guest Log: drwx------. 5 atlas atlas      4096 Feb  8 17:13 pilot3
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas 177899039 Feb  8 22:02 HITS.48442031._005845.pool.root.1
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas      1035 Feb  8 22:04 memory_monitor_summary.json
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas   1513088 Feb  8 22:04 agis_ddmendpoints.agis.ALL.json
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas    497205 Feb  8 22:04 log.48442031._005845.job.log.tgz.1
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas        95 Feb  8 22:04 pilot_heartbeat.json
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas      6344 Feb  8 22:04 heartbeat.json
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas      4801 Feb  8 22:05 pilotlog.txt
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas   2387037 Feb  8 22:05 log.48442031._005845.job.log.1
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas       357 Feb  8 22:05 output.list
2026-02-08 23:05:07 (5644): Guest Log: -rw-r--r--. 1 atlas atlas       620 Feb  8 22:05 runtime_log
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas   2897920 Feb  8 22:05 result.tar.gz
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas       677 Feb  8 22:05 xnXMDm0UG98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmFSdKDmVjIQJm.diag
2026-02-08 23:05:07 (5644): Guest Log: -rw-r--r--. 1 atlas atlas      8802 Feb  8 22:05 runtime_log.err
2026-02-08 23:05:07 (5644): Guest Log: Looking for outputfile HITS.48442031._005845.pool.root.1
2026-02-08 23:05:07 (5644): Guest Log: HITS file was successfully produced
2026-02-08 23:05:07 (5644): Guest Log: -rw-------. 1 atlas atlas 177899039 Feb  8 22:02 /home/atlas/RunAtlas/HITS.48442031._005845.pool.root.1
2026-02-08 23:05:09 (5644): Guest Log: Successfully finished the ATLAS job!
2026-02-08 23:05:09 (5644): Guest Log: Copying the results back to the shared directory!
2026-02-08 23:05:10 (5644): Guest Log:  *** Contents of shared directory: ***
2026-02-08 23:05:10 (5644): Guest Log: total 656156
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root 490477192 Feb  8 17:10 ATLAS.root_0
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root 177899039 Feb  8 22:05 HITS.pool.root.1
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root      5954 Feb  8 17:10 init_data.xml
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root    597953 Feb  8 16:20 input.tar.gz
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root   2897920 Feb  8 22:05 result.tar.gz
2026-02-08 23:05:10 (5644): Guest Log: -rwxrwxrwx. 1 root root     15845 Feb  8 16:20 start_atlas.sh
2026-02-08 23:05:10 (5644): Guest Log:  *** Success! Shutting down the machine. ***
2026-02-08 23:05:10 (5644): VM Completion File Detected.
2026-02-08 23:05:10 (5644): Powering off VM.
2026-02-08 23:05:11 (5644): Successfully stopped VM.
2026-02-08 23:05:11 (5644): Deregistering VM. (boinc_b716dd5d948cf369, slot#1)
2026-02-08 23:05:11 (5644): Removing network bandwidth throttle group from VM.
2026-02-08 23:05:11 (5644): Removing VM from VirtualBox.
2026-02-08 23:05:17 (5644): called boinc_finish(0)

</stderr_txt>
]]>

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