Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
10:30:45 (275603): wrapper (7.7.26015): starting
10:30:45 (275603): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 10:30:45] Arguments: --nthreads 8
[2026-02-08 10:30:45] Threads: 8
[2026-02-08 10:30:45] Checking for CVMFS
[2026-02-08 10:30:46] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 10:30:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 10:30:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 10:30:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 10:30:48] 2.13.3.0 12763 136746 181176 156024 2 279 35095760 40960000 27518 16776704 0 703426533 99.678 604154011 9400 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-08 10:30:48] CVMFS is ok
[2026-02-08 10:30:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 10:30:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 10:30:48] Further information can be found at the LHC@home message board.
[2026-02-08 10:30:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 10:30:48] Checking for apptainer binary...
[2026-02-08 10:30:48] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 10:30:48] Running /usr/bin/apptainer --version
[2026-02-08 10:30:48] apptainer version 1.4.5-2.el9
[2026-02-08 10:30:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 10:30:49] c7-2-17.aglt2.org
[2026-02-08 10:30:49] apptainer works
[2026-02-08 10:30:49] Set ATHENA_PROC_NUMBER=8
[2026-02-08 10:30:49] Set ATHENA_CORE_NUMBER=8
[2026-02-08 10:30:49] Starting ATLAS job with PandaID=7004227097
[2026-02-08 10:30:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
13:14:13 (1027915): wrapper (7.7.26015): starting
13:14:13 (1027915): wrapper: running run_atlas (--nthreads 9)
[2026-02-08 13:14:13] Arguments: --nthreads 9
[2026-02-08 13:14:13] Threads: 9
[2026-02-08 13:14:13] This job has been restarted, cleaning up previous attempt
[2026-02-08 13:14:13] Checking for CVMFS
[2026-02-08 13:14:13] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 13:14:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 13:14:14] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 13:14:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 13:14:14] 2.13.3.0 12763 136910 181796 156028 3 461 37061354 40960000 23565 16776704 0 704095340 99.678 604545399 9405 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2026-02-08 13:14:14] CVMFS is ok
[2026-02-08 13:14:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 13:14:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 13:14:14] Further information can be found at the LHC@home message board.
[2026-02-08 13:14:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 13:14:14] Checking for apptainer binary...
[2026-02-08 13:14:14] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 13:14:14] Running /usr/bin/apptainer --version
[2026-02-08 13:14:14] apptainer version 1.4.5-2.el9
[2026-02-08 13:14:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 13:14:14] c7-2-17.aglt2.org
[2026-02-08 13:14:14] apptainer works
[2026-02-08 13:14:14] Set ATHENA_PROC_NUMBER=9
[2026-02-08 13:14:14] Set ATHENA_CORE_NUMBER=9
[2026-02-08 13:14:14] Starting ATLAS job with PandaID=7004227097
[2026-02-08 13:14:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 18:01:03]  *** The last 200 lines of the pilot log: ***
[2026-02-08 18:01:03] 2026-02-08 23:00:22,184 | INFO     | job 7004227097 has finished - writing final server update
[2026-02-08 18:01:03] 2026-02-08 23:00:22,184 | INFO     | total number of processed events: 400 (read)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,237 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-7004227097/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,238 | INFO     | extracted standard info from prmon json
[2026-02-08 18:01:03] 2026-02-08 23:00:22,238 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 18:01:03] 2026-02-08 23:00:22,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 18:01:03] 2026-02-08 23:00:22,238 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 18:01:03] 2026-02-08 23:00:22,238 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 18:01:03] 2026-02-08 23:00:22,289 | INFO     | fitting pss+swap vs Time
[2026-02-08 18:01:03] 2026-02-08 23:00:22,306 | INFO     | sum of square deviations: 6879996152.569429
[2026-02-08 18:01:03] 2026-02-08 23:00:22,308 | INFO     | sum of deviations: 49283478719.12096
[2026-02-08 18:01:03] 2026-02-08 23:00:22,308 | INFO     | mean x: 1770583031.039146
[2026-02-08 18:01:03] 2026-02-08 23:00:22,308 | INFO     | mean y: 2500088.1708185053
[2026-02-08 18:01:03] 2026-02-08 23:00:22,308 | INFO     | intersect: -12680717924.686035
[2026-02-08 18:01:03] 2026-02-08 23:00:22,309 | INFO     | chi2: 2.176394725183252
[2026-02-08 18:01:03] 2026-02-08 23:00:22,309 | INFO     | sum of square deviations: 6519229952.561596
[2026-02-08 18:01:03] 2026-02-08 23:00:22,356 | INFO     | sum of deviations: 65961373698.07241
[2026-02-08 18:01:03] 2026-02-08 23:00:22,356 | INFO     | mean x: 1770582878.539855
[2026-02-08 18:01:03] 2026-02-08 23:00:22,356 | INFO     | mean y: 2507028.811594203
[2026-02-08 18:01:03] 2026-02-08 23:00:22,356 | INFO     | intersect: -17912197585.7857
[2026-02-08 18:01:03] 2026-02-08 23:00:22,357 | INFO     | chi2: 1.4765129386454856
[2026-02-08 18:01:03] 2026-02-08 23:00:22,357 | INFO     | current chi2=1.4765129386454856 (change=32.15785162679239 %)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,357 | INFO     | sum of square deviations: 6171301202.553484
[2026-02-08 18:01:03] 2026-02-08 23:00:22,359 | INFO     | sum of deviations: 64426781039.70104
[2026-02-08 18:01:03] 2026-02-08 23:00:22,359 | INFO     | mean x: 1770582726.0405905
[2026-02-08 18:01:03] 2026-02-08 23:00:22,407 | INFO     | mean y: 2506356.118081181
[2026-02-08 18:01:03] 2026-02-08 23:00:22,407 | INFO     | intersect: -18481917245.843597
[2026-02-08 18:01:03] 2026-02-08 23:00:22,408 | INFO     | chi2: 1.476455169857163
[2026-02-08 18:01:03] 2026-02-08 23:00:22,408 | INFO     | current chi2=1.476455169857163 (change=0.003912514872746563 %)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,408 | INFO     | right removable region: 270
[2026-02-08 18:01:03] 2026-02-08 23:00:22,408 | INFO     | sum of square deviations: 6519223242.561596
[2026-02-08 18:01:03] 2026-02-08 23:00:22,410 | INFO     | sum of deviations: 4566430668.003643
[2026-02-08 18:01:03] 2026-02-08 23:00:22,410 | INFO     | mean x: 1770583183.539855
[2026-02-08 18:01:03] 2026-02-08 23:00:22,410 | INFO     | mean y: 2518870.59057971
[2026-02-08 18:01:03] 2026-02-08 23:00:22,410 | INFO     | intersect: -1237697187.1726124
[2026-02-08 18:01:03] 2026-02-08 23:00:22,411 | INFO     | chi2: 0.8428738693296606
[2026-02-08 18:01:03] 2026-02-08 23:00:22,411 | INFO     | current chi2=0.8428738693296606 (change=61.272012857929944 %)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,452 | INFO     | sum of square deviations: 6171287782.553485
[2026-02-08 18:01:03] 2026-02-08 23:00:22,454 | INFO     | sum of deviations: -10592724333.450186
[2026-02-08 18:01:03] 2026-02-08 23:00:22,454 | INFO     | mean x: 1770583336.0405905
[2026-02-08 18:01:03] 2026-02-08 23:00:22,454 | INFO     | mean y: 2525515.3136531366
[2026-02-08 18:01:03] 2026-02-08 23:00:22,454 | INFO     | intersect: 3041648280.111735
[2026-02-08 18:01:03] 2026-02-08 23:00:22,454 | INFO     | chi2: 0.7426946225959
[2026-02-08 18:01:03] 2026-02-08 23:00:22,455 | INFO     | current chi2=0.7426946225959 (change=11.885437475174468 %)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,455 | INFO     | left removable region: 20
[2026-02-08 18:01:03] 2026-02-08 23:00:22,455 | INFO     | sum of square deviations: 4844910096.016033
[2026-02-08 18:01:03] 2026-02-08 23:00:22,456 | INFO     | sum of deviations: -1453115558.3680003
[2026-02-08 18:01:03] 2026-02-08 23:00:22,456 | INFO     | mean x: 1770583305.544
[2026-02-08 18:01:03] 2026-02-08 23:00:22,456 | INFO     | mean y: 2536672.488
[2026-02-08 18:01:03] 2026-02-08 23:00:22,456 | INFO     | intersect: 533581025.77502835
[2026-02-08 18:01:03] 2026-02-08 23:00:22,457 | INFO     | chi2: 0.003493956684578764
[2026-02-08 18:01:03] 2026-02-08 23:00:22,457 | INFO     | current memory leak: -0.30 B/s (using 250 data points, chi2=0.00)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,463 | INFO     | could have reported an average CPU frequency of 3084 MHz (13 samples)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,463 | INFO     | ..............................
[2026-02-08 18:01:03] 2026-02-08 23:00:22,463 | INFO     | . Timing measurements:
[2026-02-08 18:01:03] 2026-02-08 23:00:22,463 | INFO     | . get job = 0 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . initial setup = 1 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . payload setup = 6 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . stage-in = 0 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . payload execution = 17124 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . stage-out = 4 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | . log creation = 0 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,467 | INFO     | ..............................
[2026-02-08 18:01:03] 2026-02-08 23:00:22,996 | INFO     | 
[2026-02-08 18:01:03] 2026-02-08 23:00:22,997 | INFO     | job summary report
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | --------------------------------------------------
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | PanDA job id: 7004227097
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | task id: 48442031
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | errors: (none)
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | pilot state: finished 
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | transexitcode: 0
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | exeerrorcode: 0
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | exeerrordiag: 
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | exitcode: 0
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | exitmsg: OK
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | cpuconsumptiontime: 30118 s
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | nevents: 400
[2026-02-08 18:01:03] 2026-02-08 23:00:22,998 | INFO     | neventsw: 0
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | pid: 1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | pgrp: 1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | corecount: 9
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | event service: False
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | sizes: {0: 2281955, 1: 2283073, 12: 2283073, 17135: 2315317, 17141: 2324315, 17144: 2324371, 17145: 2324693}
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | --------------------------------------------------
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | 
[2026-02-08 18:01:03] 2026-02-08 23:00:22,999 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2026-02-08 18:01:03] 2026-02-08 23:00:23,144 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,144 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,144 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,146 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,146 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,146 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 18:01:03] 2026-02-08 23:00:23,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,146 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 18:01:03] 2026-02-08 23:00:23,160 | INFO     | job 7004227097 has completed (purged errors)
[2026-02-08 18:01:03] 2026-02-08 23:00:23,160 | INFO     | overall cleanup function is called
[2026-02-08 18:01:03] 2026-02-08 23:00:24,170 | INFO     | --- collectZombieJob: --- 10, [1053232]
[2026-02-08 18:01:03] 2026-02-08 23:00:24,170 | INFO     | zombie collector waiting for pid 1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:24,171 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 18:01:03] 2026-02-08 23:00:24,171 | INFO     | collected zombie processes
[2026-02-08 18:01:03] 2026-02-08 23:00:24,171 | INFO     | will attempt to kill all subprocesses of pid=1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:25,912 | INFO     | PID=1042611 has CPU usage=15.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2026-02-08 18:01:03] 2026-02-08 23:00:25,916 | INFO     | .. there are 29 such processes running
[2026-02-08 18:01:03] 2026-02-08 23:00:26,293 | INFO     | process IDs to be killed: [1053232] (in reverse order)
[2026-02-08 18:01:03] 2026-02-08 23:00:26,819 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 18:01:03] 2026-02-08 23:00:26,820 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 18:01:03] 2026-02-08 23:00:26,864 | INFO     | did not find any defunct processes belonging to 1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:26,945 | INFO     | did not find any defunct processes belonging to 1053232
[2026-02-08 18:01:03] 2026-02-08 23:00:26,945 | INFO     | ready for new job
[2026-02-08 18:01:03] 2026-02-08 23:00:26,946 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 18:01:03] 2026-02-08 23:00:26,980 | INFO     | **************************************
[2026-02-08 18:01:03] 2026-02-08 23:00:26,980 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 18:01:03] 2026-02-08 23:00:26,980 | INFO     | **************************************
[2026-02-08 18:01:03] 2026-02-08 23:00:26,980 | INFO     | 
[2026-02-08 18:01:03] 2026-02-08 23:00:27,006 | INFO     | architecture information:
[2026-02-08 18:01:03] 2026-02-08 23:00:27,008 | INFO     | executing command: cat /etc/os-release
[2026-02-08 18:01:03] 2026-02-08 23:00:27,273 | INFO     | cat /etc/os-release:
[2026-02-08 18:01:03] NAME="CentOS Linux"
[2026-02-08 18:01:03] VERSION="7 (Core)"
[2026-02-08 18:01:03] ID="centos"
[2026-02-08 18:01:03] ID_LIKE="rhel fedora"
[2026-02-08 18:01:03] VERSION_ID="7"
[2026-02-08 18:01:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 18:01:03] ANSI_COLOR="0;31"
[2026-02-08 18:01:03] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 18:01:03] HOME_URL="https://www.centos.org/"
[2026-02-08 18:01:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 18:01:03] 
[2026-02-08 18:01:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 18:01:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 18:01:03] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 18:01:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 18:01:03] 
[2026-02-08 18:01:03] 2026-02-08 23:00:27,274 | INFO     | **************************************
[2026-02-08 18:01:03] 2026-02-08 23:00:27,778 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2026-02-08 18:01:03] 2026-02-08 23:00:27,848 | INFO     | sufficient remaining disk space (121661030400 B)
[2026-02-08 18:01:03] 2026-02-08 23:00:27,849 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 18:01:03] 2026-02-08 23:00:27,849 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 18:01:03] 2026-02-08 23:00:27,849 | INFO     | update_server=False
[2026-02-08 18:01:03] 2026-02-08 23:00:27,849 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 18:01:03] 2026-02-08 23:00:27,850 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 18:01:03] 2026-02-08 23:00:27,850 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 18:01:03] 2026-02-08 23:00:27,851 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 18:01:03] 2026-02-08 23:00:27,851 | INFO     | aborting loop
[2026-02-08 18:01:03] 2026-02-08 23:00:28,301 | INFO     | all payload control threads have been joined
[2026-02-08 18:01:03] 2026-02-08 23:00:28,355 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 18:01:03] 2026-02-08 23:00:28,609 | INFO     | all data control threads have been joined
[2026-02-08 18:01:03] 2026-02-08 23:00:28,854 | INFO     | [job] retrieve thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:28,856 | INFO     | [job] job monitor thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:28,857 | INFO     | [job] queue monitor thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,307 | INFO     | [payload] control thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,352 | INFO     | [payload] validate_post thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,392 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,393 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,419 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,420 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,425 | INFO     | all job control threads have been joined
[2026-02-08 18:01:03] 2026-02-08 23:00:29,489 | INFO     | [data] copytool_in thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,615 | INFO     | [data] control thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,694 | INFO     | [payload] failed_post thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:29,858 | INFO     | [data] copytool_out thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:30,193 | INFO     | [job] validate thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:30,431 | INFO     | [job] control thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:32,363 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 18:01:03] 2026-02-08 23:00:55,372 | INFO     | [monitor] cgroup control has ended
[2026-02-08 18:01:03] 2026-02-08 23:00:56,238 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139800240752448)>', '<ExcThread(monitor, started 139799172216576)>']
[2026-02-08 18:01:03] 2026-02-08 23:00:59,824 | INFO     | PID=1042611 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | INFO     | .. there are 29 such processes running
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 18:01:03] 2026-02-08 23:00:59,825 | INFO     | [monitor] control thread has ended
[2026-02-08 18:01:03] 2026-02-08 23:01:01,286 | INFO     | all workflow threads have been joined
[2026-02-08 18:01:03] 2026-02-08 23:01:01,286 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 18:01:03] 2026-02-08 23:01:01,287 | INFO     | traces error code: 0
[2026-02-08 18:01:03] 2026-02-08 23:01:01,287 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 18:01:03] 2026-02-08 23:01:02,272 [wrapper] ==== pilot stdout END ====
[2026-02-08 18:01:03] 2026-02-08 23:01:02,276 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 18:01:03] 2026-02-08 23:01:02,287 [wrapper] pilotpid: 1042611
[2026-02-08 18:01:03] 2026-02-08 23:01:02,291 [wrapper] Pilot exit status: 0
[2026-02-08 18:01:03] 2026-02-08 23:01:02,329 [wrapper] pandaids: 7004227097 7004227097
[2026-02-08 18:01:03] 2026-02-08 23:01:02,814 [wrapper] cleanup supervisor_pilot 2546887 1042612
[2026-02-08 18:01:03] 2026-02-08 23:01:02,874 [wrapper] Test setup, not cleaning
[2026-02-08 18:01:03] 2026-02-08 23:01:02,887 [wrapper] apfmon messages muted
[2026-02-08 18:01:03] 2026-02-08 23:01:02,906 [wrapper] ==== wrapper stdout END ====
[2026-02-08 18:01:03] 2026-02-08 23:01:02,913 [wrapper] ==== wrapper stderr END ====
[2026-02-08 18:01:03]  *** Error codes and diagnostics ***
[2026-02-08 18:01:03]     "exeErrorCode": 0,
[2026-02-08 18:01:03]     "exeErrorDiag": "",
[2026-02-08 18:01:03]     "pilotErrorCode": 0,
[2026-02-08 18:01:03]     "pilotErrorDiag": "",
[2026-02-08 18:01:03]  *** Listing of results directory ***
[2026-02-08 18:01:03] total 1171116
[2026-02-08 18:01:03] drwx------. 5 boincer umatlas      4096 Feb  2 10:00 pilot3
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas    584627 Feb  8 02:08 pilot3.tar.gz
[2026-02-08 18:01:03] -rwx------. 1 boincer umatlas     36322 Feb  8 02:08 runpilot2-wrapper.sh
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas      5111 Feb  8 02:10 queuedata.json
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas       100 Feb  8 10:30 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 18:01:03] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  8 10:30 run_atlas
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas       105 Feb  8 10:30 job.xml
[2026-02-08 18:01:03] -rw-r--r--. 3 boincer umatlas 506513733 Feb  8 10:30 EVNT.48442027._000108.pool.root.1
[2026-02-08 18:01:03] -rw-r--r--. 3 boincer umatlas 506513733 Feb  8 10:30 ATLAS.root_0
[2026-02-08 18:01:03] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 10:30 start_atlas.sh
[2026-02-08 18:01:03] drwxrwx--x. 2 boincer umatlas      4096 Feb  8 10:30 shared
[2026-02-08 18:01:03] -rw-r--r--. 2 boincer umatlas    597956 Feb  8 10:30 input.tar.gz
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas         0 Feb  8 10:30 boinc_lockfile
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas      2529 Feb  8 13:14 pandaJob.out
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas        57 Feb  8 13:14 setup.sh.local
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas   1009504 Feb  8 13:14 agis_schedconf.cvmfs.json
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas       428 Feb  8 13:14 workernode_map.json
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas      6948 Feb  8 17:55 init_data.xml
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas 176545590 Feb  8 17:59 HITS.48442031._005470.pool.root.1
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas       531 Feb  8 17:59 boinc_task_state.xml
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas      1047 Feb  8 18:00 memory_monitor_summary.json
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas        96 Feb  8 18:00 pilot_heartbeat.json
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas   1513088 Feb  8 18:00 agis_ddmendpoints.agis.ALL.json
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas    541290 Feb  8 18:00 log.48442031._005470.job.log.tgz.1
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas      6348 Feb  8 18:00 heartbeat.json
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas      4821 Feb  8 18:01 pilotlog.txt
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas      8192 Feb  8 18:01 boinc_mmap_file
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas   2307686 Feb  8 18:01 log.48442031._005470.job.log.1
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas        28 Feb  8 18:01 wrapper_checkpoint.txt
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas       357 Feb  8 18:01 output.list
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas       620 Feb  8 18:01 runtime_log
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas   2867200 Feb  8 18:01 result.tar.gz
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas      9422 Feb  8 18:01 runtime_log.err
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas       784 Feb  8 18:01 JKtMDmF5D98n9Rq4apOajLDm4fhM0noT9bVooX4SDm2hcKDmdPCpAn.diag
[2026-02-08 18:01:03] -rw-r--r--. 1 boincer umatlas     23383 Feb  8 18:01 stderr.txt
[2026-02-08 18:01:03] HITS file was successfully produced:
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas 176545590 Feb  8 17:59 shared/HITS.pool.root.1
[2026-02-08 18:01:03]  *** Contents of shared directory: ***
[2026-02-08 18:01:03] total 670460
[2026-02-08 18:01:03] -rw-r--r--. 3 boincer umatlas 506513733 Feb  8 10:30 ATLAS.root_0
[2026-02-08 18:01:03] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 10:30 start_atlas.sh
[2026-02-08 18:01:03] -rw-r--r--. 2 boincer umatlas    597956 Feb  8 10:30 input.tar.gz
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas 176545590 Feb  8 17:59 HITS.pool.root.1
[2026-02-08 18:01:03] -rw-------. 1 boincer umatlas   2867200 Feb  8 18:01 result.tar.gz
18:01:05 (1027915): run_atlas exited; CPU time 30861.366806
18:01:05 (1027915): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN