Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:04:54 (2298837): wrapper (7.7.26015): starting
05:04:54 (2298837): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 05:04:54] Arguments: --nthreads 3
[2026-02-09 05:04:54] Threads: 3
[2026-02-09 05:04:54] Checking for CVMFS
[2026-02-09 05:04:54] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 05:04:55] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 05:04:55] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 05:04:55] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 05:04:55] 2.9.2.0 1622115 4116 78340 156042 0 50 26268976 36864000 0 130560 0 1764950 99.984 148582 16976 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 05:04:55] CVMFS is ok
[2026-02-09 05:04:55] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 05:04:55] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 05:04:55] Further information can be found at the LHC@home message board.
[2026-02-09 05:04:55] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 05:04:55] Checking for apptainer binary...
[2026-02-09 05:04:55] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 05:04:55] Running /usr/bin/apptainer --version
[2026-02-09 05:04:55] apptainer version 1.4.1-1.1
[2026-02-09 05:04:55] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 05:04:55] magicA246a
[2026-02-09 05:04:55] apptainer works
[2026-02-09 05:04:55] Set ATHENA_PROC_NUMBER=3
[2026-02-09 05:04:55] Set ATHENA_CORE_NUMBER=3
[2026-02-09 05:04:55] Starting ATLAS job with PandaID=7004482977
[2026-02-09 05:04:55] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 06:26:16]  *** The last 200 lines of the pilot log: ***
[2026-02-09 06:26:16] 2026-02-09 05:25:16,038 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 06:26:16] 2026-02-09 05:25:16,038 | INFO     | update_server=False
[2026-02-09 06:26:16] 2026-02-09 05:25:16,038 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 06:26:16] 2026-02-09 05:25:16,038 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 06:26:16] 2026-02-09 05:25:16,041 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 06:26:16] 2026-02-09 05:25:16,232 | INFO     | all job control threads have been joined
[2026-02-09 06:26:16] 2026-02-09 05:25:16,637 | INFO     | all data control threads have been joined
[2026-02-09 06:26:16] 2026-02-09 05:25:16,687 | WARNING  | process 2307325 can no longer be monitored (due to stat problems) - aborting
[2026-02-09 06:26:16] 2026-02-09 05:25:16,727 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 06:26:16] 2026-02-09 05:25:16,728 | INFO     | using path: /local/data/boinc/slots/0/memory_monitor_summary.json (trf name=prmon)
[2026-02-09 06:26:16] 2026-02-09 05:25:16,728 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-09 06:26:16] 2026-02-09 05:25:16,728 | WARNING  | maxPSS not found in memory monitor output
[2026-02-09 06:26:16] 2026-02-09 05:25:16,728 | INFO     | skipping file size check of payload stdout file (/local/data/boinc/slots/0/PanDA_Pilot-7004482977/payload.stdout) since it has not been created yet
[2026-02-09 06:26:16] 2026-02-09 05:25:16,728 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 06:26:16] 2026-02-09 05:25:16,739 | INFO     | sufficient remaining disk space (274507759616 B)
[2026-02-09 06:26:16] 2026-02-09 05:25:16,739 | WARNING  | skipping size check of workdir since it has not been created yet
[2026-02-09 06:26:16] 2026-02-09 05:25:16,739 | INFO     | output file size check: skipping output file /local/data/boinc/slots/0/PanDA_Pilot-7004482977/HITS.48442031._006406.pool.root.1 since it does not exist
[2026-02-09 06:26:16] 2026-02-09 05:25:16,792 | INFO     | number of running child processes to parent process 2307325: 1
[2026-02-09 06:26:16] 2026-02-09 05:25:16,792 | INFO     | maximum number of monitored processes: 6
[2026-02-09 06:26:16] 2026-02-09 05:25:16,792 | INFO     | aborting job monitoring since job object (job id=7004482977) has expired
[2026-02-09 06:26:16] 2026-02-09 05:25:16,792 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 06:26:16] 2026-02-09 05:25:16,792 | INFO     | will abort loop
[2026-02-09 06:26:16] 2026-02-09 05:25:17,044 | INFO     | [job] retrieve thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:17,044 | INFO     | [job] queue monitor thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:17,044 | INFO     | all payload control threads have been joined
[2026-02-09 06:26:16] 2026-02-09 05:25:17,199 | INFO     | [payload] failed_post thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:17,237 | INFO     | [job] control thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:17,268 | INFO     | job.realtimelogging is not enabled
[2026-02-09 06:26:16] 2026-02-09 05:25:17,643 | INFO     | [data] control thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:17,797 | INFO     | [job] job monitor thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,046 | INFO     | [data] copytool_out thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,050 | INFO     | [payload] control thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,174 | INFO     | [job] validate thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,210 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,228 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,232 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,273 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,401 | INFO     | [data] copytool_in thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:18,557 | INFO     | [payload] validate_post thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:19,070 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 06:26:16] 2026-02-09 05:25:23,073 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 06:26:16] 2026-02-09 05:25:47,023 | INFO     | PID=2302896 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 06:26:16] 2026-02-09 05:25:47,024 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 06:26:16] 2026-02-09 05:25:47,024 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 06:26:16] 2026-02-09 05:25:47,024 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 06:26:16] 2026-02-09 05:26:10,580 | INFO     | [monitor] cgroup control has ended
[2026-02-09 06:26:16] 2026-02-09 05:26:11,595 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139808751863616)>', '<ExcThread(monitor, started 139808391276288)>']
[2026-02-09 06:26:16] 2026-02-09 05:26:12,147 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 06:26:16] 2026-02-09 05:26:12,147 | INFO     | [monitor] control thread has ended
[2026-02-09 06:26:16] 2026-02-09 05:26:16,605 | INFO     | all workflow threads have been joined
[2026-02-09 06:26:16] 2026-02-09 05:26:16,606 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 06:26:16] 2026-02-09 05:26:16,606 | INFO     | traces error code: 0
[2026-02-09 06:26:16] 2026-02-09 05:26:16,606 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 06:26:16] 2026-02-09 05:26:16,658 [wrapper] ==== pilot stdout END ====
[2026-02-09 06:26:16] 2026-02-09 05:26:16,660 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 06:26:16] 2026-02-09 05:26:16,663 [wrapper] pilotpid: 2302896
[2026-02-09 06:26:16] 2026-02-09 05:26:16,665 [wrapper] Pilot exit status: 0
[2026-02-09 06:26:16] 2026-02-09 05:26:16,672 [wrapper] pandaids: 7004482977
[2026-02-09 06:26:16] 2026-02-09 05:26:16,692 [wrapper] cleanup supervisor_pilot 2313400 2302897
[2026-02-09 06:26:16] 2026-02-09 05:26:16,695 [wrapper] Test setup, not cleaning
[2026-02-09 06:26:16] 2026-02-09 05:26:16,697 [wrapper] apfmon messages muted
[2026-02-09 06:26:16] 2026-02-09 05:26:16,699 [wrapper] ==== wrapper stdout END ====
[2026-02-09 06:26:16] 2026-02-09 05:26:16,701 [wrapper] ==== wrapper stderr END ====
[2026-02-09 06:26:16]  *** Error codes and diagnostics ***
[2026-02-09 06:26:16]     "exeErrorCode": 0,
[2026-02-09 06:26:16]     "exeErrorDiag": "",
[2026-02-09 06:26:16]     "pilotErrorCode": 0,
[2026-02-09 06:26:16]     "pilotErrorDiag": "",
[2026-02-09 06:26:16]  *** Listing of results directory ***
[2026-02-09 06:26:16] total 671428
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc    584627 Feb  8 10:40 pilot3.tar.gz
[2026-02-09 06:26:16] -rwx------ 1 boinc boinc     36322 Feb  8 10:41 runpilot2-wrapper.sh
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      5111 Feb  8 10:41 queuedata.json
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc       100 Feb  9 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 06:26:16] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 05:04 run_atlas
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc       105 Feb  9 05:04 job.xml
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc 501213797 Feb  9 05:04 EVNT.48442027._000187.pool.root.1
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc    597949 Feb  9 05:04 input.tar.gz
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc     15845 Feb  9 05:04 start_atlas.sh
[2026-02-09 06:26:16] drwxrwx--x 2 boinc boinc      4096 Feb  9 05:04 shared
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc         0 Feb  9 05:04 boinc_setup_complete
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      6447 Feb  9 05:04 init_data.xml
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc         0 Feb  9 05:04 boinc_lockfile
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      2528 Feb  9 05:04 pandaJob.out
[2026-02-09 06:26:16] -rw------- 1 boinc boinc   1009504 Feb  9 05:05 agis_schedconf.cvmfs.json
[2026-02-09 06:26:16] -rw------- 1 boinc boinc   1513088 Feb  9 05:05 agis_ddmendpoints.agis.ALL.json
[2026-02-09 06:26:16] -rw------- 1 boinc boinc       428 Feb  9 05:05 workernode_map.json
[2026-02-09 06:26:16] drwx------ 5 boinc boinc      4096 Feb  9 05:05 pilot3
[2026-02-09 06:26:16] -rw------- 1 boinc boinc 180470660 Feb  9 06:24 HITS.48442031._006406.pool.root.1
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc       530 Feb  9 06:25 boinc_task_state.xml
[2026-02-09 06:26:16] -rw------- 1 boinc boinc      1018 Feb  9 06:25 memory_monitor_summary.json
[2026-02-09 06:26:16] -rw------- 1 boinc boinc    254667 Feb  9 06:25 log.48442031._006406.job.log.tgz.1
[2026-02-09 06:26:16] -rw------- 1 boinc boinc      6305 Feb  9 06:25 heartbeat.json
[2026-02-09 06:26:16] -rw------- 1 boinc boinc        95 Feb  9 06:25 pilot_heartbeat.json
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      8192 Feb  9 06:26 boinc_mmap_file
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc        27 Feb  9 06:26 wrapper_checkpoint.txt
[2026-02-09 06:26:16] -rw------- 1 boinc boinc      6321 Feb  9 06:26 pilotlog.txt
[2026-02-09 06:26:16] -rw------- 1 boinc boinc    707161 Feb  9 06:26 log.48442031._006406.job.log.1
[2026-02-09 06:26:16] -rw------- 1 boinc boinc       357 Feb  9 06:26 output.list
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc       620 Feb  9 06:26 runtime_log
[2026-02-09 06:26:16] -rw------- 1 boinc boinc    983040 Feb  9 06:26 result.tar.gz
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      8916 Feb  9 06:26 runtime_log.err
[2026-02-09 06:26:16] -rw------- 1 boinc boinc       661 Feb  9 06:26 a4FLDmHTG98nsSi4ap6QjLDmwznN0nGgGQJmIVkRDmiOdKDmyobAYn.diag
[2026-02-09 06:26:16] -rw-r--r-- 1 boinc boinc      9404 Feb  9 06:26 stderr.txt
[2026-02-09 06:26:16] HITS file was successfully produced:
[2026-02-09 06:26:16] -rw------- 1 boinc boinc 180470660 Feb  9 06:24 shared/HITS.pool.root.1
[2026-02-09 06:26:16]  *** Contents of shared directory: ***
[2026-02-09 06:26:16] total 667280
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc 501213797 Feb  9 05:04 ATLAS.root_0
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc    597949 Feb  9 05:04 input.tar.gz
[2026-02-09 06:26:16] -rw-r--r-- 2 boinc boinc     15845 Feb  9 05:04 start_atlas.sh
[2026-02-09 06:26:16] -rw------- 1 boinc boinc 180470660 Feb  9 06:24 HITS.pool.root.1
[2026-02-09 06:26:16] -rw------- 1 boinc boinc    983040 Feb  9 06:26 result.tar.gz
06:26:18 (2298837): run_atlas exited; CPU time 13769.602068
06:26:18 (2298837): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN