Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
02:19:53 (2268692): wrapper (7.7.26015): starting
02:19:53 (2268692): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 02:19:53] Arguments: --nthreads 3
[2026-02-09 02:19:53] Threads: 3
[2026-02-09 02:19:53] Checking for CVMFS
[2026-02-09 02:19:53] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 02:19:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 02:19:53] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 02:19:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 02:19:53] 2.9.2.0 1622115 3951 81056 156039 1 49 26256203 36864000 0 130560 0 1684981 99.983 144478 16795 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 02:19:53] CVMFS is ok
[2026-02-09 02:19:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 02:19:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 02:19:53] Further information can be found at the LHC@home message board.
[2026-02-09 02:19:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 02:19:53] Checking for apptainer binary...
[2026-02-09 02:19:53] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 02:19:53] Running /usr/bin/apptainer --version
[2026-02-09 02:19:53] apptainer version 1.4.1-1.1
[2026-02-09 02:19:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 02:19:53] magicA246a
[2026-02-09 02:19:53] apptainer works
[2026-02-09 02:19:53] Set ATHENA_PROC_NUMBER=3
[2026-02-09 02:19:53] Set ATHENA_CORE_NUMBER=3
[2026-02-09 02:19:53] Starting ATLAS job with PandaID=7004227124
[2026-02-09 02:19:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 03:42:14]  *** The last 200 lines of the pilot log: ***
[2026-02-09 03:42:14] 2026-02-09 02:41:40,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | job 7004227124 has completed (purged errors)
[2026-02-09 03:42:14] 2026-02-09 02:41:40,750 | INFO     | overall cleanup function is called
[2026-02-09 03:42:14] 2026-02-09 02:41:41,756 | INFO     | --- collectZombieJob: --- 10, [2277183]
[2026-02-09 03:42:14] 2026-02-09 02:41:41,757 | INFO     | zombie collector waiting for pid 2277183
[2026-02-09 03:42:14] 2026-02-09 02:41:41,757 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 03:42:14] 2026-02-09 02:41:41,757 | INFO     | collected zombie processes
[2026-02-09 03:42:14] 2026-02-09 02:41:41,757 | INFO     | will attempt to kill all subprocesses of pid=2277183
[2026-02-09 03:42:14] 2026-02-09 02:41:41,814 | INFO     | process IDs to be killed: [2277183] (in reverse order)
[2026-02-09 03:42:14] 2026-02-09 02:41:41,842 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 03:42:14] 2026-02-09 02:41:41,843 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 03:42:14] 2026-02-09 02:41:41,845 | INFO     | did not find any defunct processes belonging to 2277183
[2026-02-09 03:42:14] 2026-02-09 02:41:41,846 | INFO     | did not find any defunct processes belonging to 2277183
[2026-02-09 03:42:14] 2026-02-09 02:41:41,846 | INFO     | ready for new job
[2026-02-09 03:42:14] 2026-02-09 02:41:41,846 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | **************************************
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | **************************************
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | 
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | architecture information:
[2026-02-09 03:42:14] 2026-02-09 02:41:41,847 | INFO     | executing command: cat /etc/os-release
[2026-02-09 03:42:14] 2026-02-09 02:41:41,856 | INFO     | cat /etc/os-release:
[2026-02-09 03:42:14] NAME="CentOS Linux"
[2026-02-09 03:42:14] VERSION="7 (Core)"
[2026-02-09 03:42:14] ID="centos"
[2026-02-09 03:42:14] ID_LIKE="rhel fedora"
[2026-02-09 03:42:14] VERSION_ID="7"
[2026-02-09 03:42:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 03:42:14] ANSI_COLOR="0;31"
[2026-02-09 03:42:14] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 03:42:14] HOME_URL="https://www.centos.org/"
[2026-02-09 03:42:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 03:42:14] 
[2026-02-09 03:42:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 03:42:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 03:42:14] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 03:42:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 03:42:14] 
[2026-02-09 03:42:14] 2026-02-09 02:41:41,856 | INFO     | **************************************
[2026-02-09 03:42:14] 2026-02-09 02:41:42,359 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 03:42:14] 2026-02-09 02:41:42,370 | INFO     | sufficient remaining disk space (274863226880 B)
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | INFO     | update_server=False
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 03:42:14] 2026-02-09 02:41:42,371 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 03:42:14] 2026-02-09 02:41:42,372 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 03:42:14] 2026-02-09 02:41:42,536 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-09 03:42:14] 2026-02-09 02:41:42,536 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-09 03:42:14] 2026-02-09 02:41:42,536 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 03:42:14] 2026-02-09 02:41:42,536 | INFO     | will abort loop
[2026-02-09 03:42:14] 2026-02-09 02:41:43,052 | INFO     | all data control threads have been joined
[2026-02-09 03:42:14] 2026-02-09 02:41:43,134 | INFO     | all job control threads have been joined
[2026-02-09 03:42:14] 2026-02-09 02:41:43,376 | INFO     | [job] retrieve thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:43,377 | INFO     | [job] queue monitor thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:43,438 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 03:42:14] 2026-02-09 02:41:43,502 | INFO     | [data] copytool_in thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:43,542 | INFO     | [job] job monitor thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:43,805 | INFO     | all payload control threads have been joined
[2026-02-09 03:42:14] 2026-02-09 02:41:44,058 | INFO     | [data] control thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,140 | INFO     | [job] control thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,316 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,747 | INFO     | [payload] validate_post thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,786 | INFO     | [job] validate thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,811 | INFO     | [payload] control thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,821 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,843 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:44,925 | INFO     | [payload] failed_post thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:45,444 | INFO     | [data] copytool_out thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:46,378 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:41:53,274 | INFO     | job.realtimelogging is not enabled
[2026-02-09 03:42:14] 2026-02-09 02:41:54,279 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 03:42:14] 2026-02-09 02:42:08,340 | INFO     | [monitor] cgroup control has ended
[2026-02-09 03:42:14] 2026-02-09 02:42:08,906 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140657704924992)>', '<ExcThread(monitor, started 140657083541248)>']
[2026-02-09 03:42:14] 2026-02-09 02:42:09,499 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 03:42:14] 2026-02-09 02:42:09,500 | INFO     | [monitor] control thread has ended
[2026-02-09 03:42:14] 2026-02-09 02:42:13,922 | INFO     | all workflow threads have been joined
[2026-02-09 03:42:14] 2026-02-09 02:42:13,922 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 03:42:14] 2026-02-09 02:42:13,923 | INFO     | traces error code: 0
[2026-02-09 03:42:14] 2026-02-09 02:42:13,923 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 03:42:14] 2026-02-09 02:42:13,978 [wrapper] ==== pilot stdout END ====
[2026-02-09 03:42:14] 2026-02-09 02:42:13,980 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 03:42:14] 2026-02-09 02:42:13,982 [wrapper] pilotpid: 2272734
[2026-02-09 03:42:14] 2026-02-09 02:42:13,985 [wrapper] Pilot exit status: 0
[2026-02-09 03:42:14] 2026-02-09 02:42:13,992 [wrapper] pandaids: 7004227124
[2026-02-09 03:42:14] 2026-02-09 02:42:14,011 [wrapper] cleanup supervisor_pilot 2283272 2272735
[2026-02-09 03:42:14] 2026-02-09 02:42:14,014 [wrapper] Test setup, not cleaning
[2026-02-09 03:42:14] 2026-02-09 02:42:14,016 [wrapper] apfmon messages muted
[2026-02-09 03:42:14] 2026-02-09 02:42:14,019 [wrapper] ==== wrapper stdout END ====
[2026-02-09 03:42:14] 2026-02-09 02:42:14,021 [wrapper] ==== wrapper stderr END ====
[2026-02-09 03:42:14]  *** Error codes and diagnostics ***
[2026-02-09 03:42:14]     "exeErrorCode": 0,
[2026-02-09 03:42:14]     "exeErrorDiag": "",
[2026-02-09 03:42:14]     "pilotErrorCode": 0,
[2026-02-09 03:42:14]     "pilotErrorDiag": "",
[2026-02-09 03:42:14]  *** Listing of results directory ***
[2026-02-09 03:42:14] total 671416
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc    584627 Feb  8 08:08 pilot3.tar.gz
[2026-02-09 03:42:14] -rwx------ 1 boinc boinc     36322 Feb  8 08:08 runpilot2-wrapper.sh
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc      5111 Feb  8 08:10 queuedata.json
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc       100 Feb  9 02:19 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 03:42:14] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 02:19 run_atlas
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc       105 Feb  9 02:19 job.xml
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc 494905523 Feb  9 02:19 EVNT.48442027._000109.pool.root.1
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc    597963 Feb  9 02:19 input.tar.gz
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc     15845 Feb  9 02:19 start_atlas.sh
[2026-02-09 03:42:14] drwxrwx--x 2 boinc boinc      4096 Feb  9 02:19 shared
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc         0 Feb  9 02:19 boinc_setup_complete
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc      6447 Feb  9 02:19 init_data.xml
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc         0 Feb  9 02:19 boinc_lockfile
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc      2528 Feb  9 02:19 pandaJob.out
[2026-02-09 03:42:14] -rw------- 1 boinc boinc   1009504 Feb  9 02:20 agis_schedconf.cvmfs.json
[2026-02-09 03:42:14] -rw------- 1 boinc boinc   1513088 Feb  9 02:20 agis_ddmendpoints.agis.ALL.json
[2026-02-09 03:42:14] -rw------- 1 boinc boinc       427 Feb  9 02:20 workernode_map.json
[2026-02-09 03:42:14] drwx------ 5 boinc boinc      4096 Feb  9 02:20 pilot3
[2026-02-09 03:42:14] -rw------- 1 boinc boinc 186758635 Feb  9 03:41 HITS.48442031._005496.pool.root.1
[2026-02-09 03:42:14] -rw------- 1 boinc boinc        95 Feb  9 03:41 pilot_heartbeat.json
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc       530 Feb  9 03:41 boinc_task_state.xml
[2026-02-09 03:42:14] -rw------- 1 boinc boinc      1016 Feb  9 03:41 memory_monitor_summary.json
[2026-02-09 03:42:14] -rw------- 1 boinc boinc    248601 Feb  9 03:41 log.48442031._005496.job.log.tgz.1
[2026-02-09 03:42:14] -rw------- 1 boinc boinc      6312 Feb  9 03:41 heartbeat.json
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc      8192 Feb  9 03:41 boinc_mmap_file
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc        27 Feb  9 03:41 wrapper_checkpoint.txt
[2026-02-09 03:42:14] -rw------- 1 boinc boinc      4810 Feb  9 03:42 pilotlog.txt
[2026-02-09 03:42:14] -rw------- 1 boinc boinc    719271 Feb  9 03:42 log.48442031._005496.job.log.1
[2026-02-09 03:42:14] -rw------- 1 boinc boinc       357 Feb  9 03:42 output.list
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc       620 Feb  9 03:42 runtime_log
[2026-02-09 03:42:14] -rw------- 1 boinc boinc    983040 Feb  9 03:42 result.tar.gz
[2026-02-09 03:42:14] -rw------- 1 boinc boinc       661 Feb  9 03:42 sXPNDmF5D98n9Rq4apOajLDm4fhM0noT9bVooX4SDmMicKDmO99N3m.diag
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc      8916 Feb  9 03:42 runtime_log.err
[2026-02-09 03:42:14] -rw-r--r-- 1 boinc boinc     12494 Feb  9 03:42 stderr.txt
[2026-02-09 03:42:14] HITS file was successfully produced:
[2026-02-09 03:42:14] -rw------- 1 boinc boinc 186758635 Feb  9 03:41 shared/HITS.pool.root.1
[2026-02-09 03:42:14]  *** Contents of shared directory: ***
[2026-02-09 03:42:14] total 667260
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc 494905523 Feb  9 02:19 ATLAS.root_0
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc    597963 Feb  9 02:19 input.tar.gz
[2026-02-09 03:42:14] -rw-r--r-- 2 boinc boinc     15845 Feb  9 02:19 start_atlas.sh
[2026-02-09 03:42:14] -rw------- 1 boinc boinc 186758635 Feb  9 03:41 HITS.pool.root.1
[2026-02-09 03:42:14] -rw------- 1 boinc boinc    983040 Feb  9 03:42 result.tar.gz
03:42:15 (2268692): run_atlas exited; CPU time 14028.659844
03:42:15 (2268692): called boinc_finish(0)

</stderr_txt>
]]>

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