Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
07:48:22 (3995614): wrapper (7.7.26015): starting
07:48:22 (3995614): wrapper: running run_atlas (--nthreads 8)
[2026-02-08 07:48:22] Arguments: --nthreads 8
[2026-02-08 07:48:22] Threads: 8
[2026-02-08 07:48:22] Checking for CVMFS
[2026-02-08 07:48:23] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 07:48:24] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 07:48:24] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 07:48:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 07:48:25] 2.13.3.0 10276 64603 171856 156020 3 656 24040736 40960001 38569 16776704 0 424884781 99.761 268258986 47125 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2026-02-08 07:48:25] CVMFS is ok
[2026-02-08 07:48:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 07:48:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 07:48:25] Further information can be found at the LHC@home message board.
[2026-02-08 07:48:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 07:48:25] Checking for apptainer binary...
[2026-02-08 07:48:25] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 07:48:25] Running /usr/bin/apptainer --version
[2026-02-08 07:48:25] apptainer version 1.4.5-2.el9
[2026-02-08 07:48:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 07:48:26] c-208-36.aglt2.org
[2026-02-08 07:48:26] apptainer works
[2026-02-08 07:48:26] Set ATHENA_PROC_NUMBER=8
[2026-02-08 07:48:26] Set ATHENA_CORE_NUMBER=8
[2026-02-08 07:48:26] Starting ATLAS job with PandaID=6994940266
[2026-02-08 07:48:26] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/7 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 09:23:28]  *** The last 200 lines of the pilot log: ***
[2026-02-08 09:23:28]  lfn=log.48317931._010217.job.log.tgz.1
[2026-02-08 09:23:28]  mtime=0
[2026-02-08 09:23:28]  protocol_id=None
[2026-02-08 09:23:28]  protocols=[{'endpoint': 'davs://dav.ndgf.org:443', 'flavour': 'WEBDAV', 'id': 331, 'path': '/atlas/disk/atlasdatadisk/rucio/'}]
[2026-02-08 09:23:28]  replicas=None
[2026-02-08 09:23:28]  scope=mc23_13p6TeV
[2026-02-08 09:23:28]  status=None
[2026-02-08 09:23:28]  status_code=0
[2026-02-08 09:23:28]  storage_token=
[2026-02-08 09:23:28]  surl=/tmp/boinchome/slots/7/PanDA_Pilot-6994940266/log.48317931._010217.job.log.tgz.1
[2026-02-08 09:23:28]  turl=davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/0b/log.48317931._010217.job.log.tgz.1
[2026-02-08 09:23:28]  workdir=None
[2026-02-08 09:23:28] ]
[2026-02-08 09:23:28] 2026-02-08 14:22:19,507 | INFO     | time since job start (5528s) is within the limit (349056.0s)
[2026-02-08 09:23:28] 2026-02-08 14:22:19,582 | INFO     | transferring file log.48317931._010217.job.log.tgz.1 from /tmp/boinchome/slots/7/PanDA_Pilot-6994940266/log.48317931._010217.job.log.tgz.1 to /tmp/boinchome/slots/
[2026-02-08 09:23:28] 2026-02-08 14:22:19,582 | INFO     | executing command: /usr/bin/env mv /tmp/boinchome/slots/7/PanDA_Pilot-6994940266/log.48317931._010217.job.log.tgz.1 /tmp/boinchome/slots/7/log.48317931._010217.job
[2026-02-08 09:23:28] 2026-02-08 14:22:19,683 | INFO     | adding to output.list: log.48317931._010217.job.log.tgz.1 davs://dav.ndgf.org:443/atlas/disk/atlasdatadisk/rucio/mc23_13p6TeV/fa/0b/log.48317931._010217.job.log.tg
[2026-02-08 09:23:28] 2026-02-08 14:22:19,684 | INFO     | alt stage-out settings: ['pl', 'write_lan', 'w', 'default'], allow_altstageout=False, remain_files=0, has_altstorage=True
[2026-02-08 09:23:28] 2026-02-08 14:22:19,684 | INFO     | summary of transferred files:
[2026-02-08 09:23:28] 2026-02-08 14:22:19,684 | INFO     |  -- lfn=log.48317931._010217.job.log.tgz.1, status_code=0, status=transferred
[2026-02-08 09:23:28] 2026-02-08 14:22:19,684 | INFO     | stage-out finished correctly
[2026-02-08 09:23:28] 2026-02-08 14:22:21,514 | INFO     | time since job start (5530s) is within the limit (349056.0s)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,107 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2026-02-08 09:23:28] 2026-02-08 14:22:22,477 | INFO     | job 6994940266 has state=finished
[2026-02-08 09:23:28] 2026-02-08 14:22:22,479 | INFO     | preparing for final server update for job 6994940266 in state='finished'
[2026-02-08 09:23:28] 2026-02-08 14:22:22,479 | INFO     | reading metadata from: /tmp/boinchome/slots/7/PanDA_Pilot-6994940266/jobReport.json
[2026-02-08 09:23:28] 2026-02-08 14:22:22,481 | INFO     | added worker_node to metadata from /tmp/boinchome/slots/7/workernode_map.json
[2026-02-08 09:23:28] 2026-02-08 14:22:22,481 | INFO     | this job has now completed (state=finished)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,481 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,481 | INFO     | log transfer has been attempted: DONE
[2026-02-08 09:23:28] 2026-02-08 14:22:22,481 | INFO     | job 6994940266 has finished - writing final server update
[2026-02-08 09:23:28] 2026-02-08 14:22:22,492 | INFO     | total number of processed events: 400 (read)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,578 | INFO     | using path: /tmp/boinchome/slots/7/PanDA_Pilot-6994940266/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,578 | INFO     | extracted standard info from prmon json
[2026-02-08 09:23:28] 2026-02-08 14:22:22,578 | INFO     | extracted standard memory fields from prmon json
[2026-02-08 09:23:28] 2026-02-08 14:22:22,578 | WARNING  | GPU info not found in prmon json: 'gpu'
[2026-02-08 09:23:28] 2026-02-08 14:22:22,579 | WARNING  | format EVNTtoHITS has no such key: dbData
[2026-02-08 09:23:28] 2026-02-08 14:22:22,579 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | fitting pss+swap vs Time
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | sum of square deviations: 177301902.62650594
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | sum of deviations: 11737709585.61446
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | mean x: 1770557909.2771084
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | mean y: 2442392.060240964
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | intersect: -117211723027.16939
[2026-02-08 09:23:28] 2026-02-08 14:22:22,580 | INFO     | chi2: 0.838023335041008
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | current memory leak: 66.20 B/s (using 83 data points, chi2=0.84)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | could have reported an average CPU frequency of 3800 MHz (7 samples)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | ..............................
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . Timing measurements:
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . get job = 0 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . initial setup = 37 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . payload setup = 50 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . stage-in = 0 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . payload execution = 5469 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . stage-out = 2 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | . log creation = 0 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,591 | INFO     | ..............................
[2026-02-08 09:23:28] 2026-02-08 14:22:22,878 | INFO     | 
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | job summary report
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | --------------------------------------------------
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | PanDA job id: 6994940266
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | task id: 48317931
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | errors: (none)
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | status: LOG_TRANSFER = DONE 
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | pilot state: finished 
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | transexitcode: 0
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | exeerrorcode: 0
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | exeerrordiag: 
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | exitcode: 0
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | exitmsg: OK
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | cpuconsumptiontime: 23476 s
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | nevents: 400
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | neventsw: 0
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | pid: 4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | pgrp: 4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | corecount: 8
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | event service: False
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | sizes: {0: 2282592, 1: 2283053, 5524: 2309636, 5527: 2318634, 5530: 2318884}
[2026-02-08 09:23:28] 2026-02-08 14:22:22,879 | INFO     | --------------------------------------------------
[2026-02-08 09:23:28] 2026-02-08 14:22:22,880 | INFO     | 
[2026-02-08 09:23:28] 2026-02-08 14:22:22,880 | INFO     | executing command: ls -lF /tmp/boinchome/slots/7
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue jobs had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue data_in had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue data_out had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue current_data_in had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,031 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue completed_jobids has 1 job(s)
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | job 6994940266 has completed (purged errors)
[2026-02-08 09:23:28] 2026-02-08 14:22:23,032 | INFO     | overall cleanup function is called
[2026-02-08 09:23:28] 2026-02-08 14:22:23,267 | WARNING  | process 4020665 can no longer be monitored (due to stat problems) - aborting
[2026-02-08 09:23:28] 2026-02-08 14:22:23,784 | INFO     | using path: /tmp/boinchome/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:23:28] 2026-02-08 14:22:23,784 | INFO     | using path: /tmp/boinchome/slots/7/memory_monitor_summary.json (trf name=prmon)
[2026-02-08 09:23:28] 2026-02-08 14:22:23,784 | WARNING  | memory limits not set in config, using defaults: 'NoneType' object has no attribute 'get'
[2026-02-08 09:23:28] 2026-02-08 14:22:23,785 | WARNING  | maxPSS not found in memory monitor output
[2026-02-08 09:23:28] 2026-02-08 14:22:24,046 | INFO     | --- collectZombieJob: --- 10, [4020665]
[2026-02-08 09:23:28] 2026-02-08 14:22:24,046 | INFO     | zombie collector waiting for pid 4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:24,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-08 09:23:28] 2026-02-08 14:22:24,046 | INFO     | collected zombie processes
[2026-02-08 09:23:28] 2026-02-08 14:22:24,046 | INFO     | will attempt to kill all subprocesses of pid=4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:25,286 | INFO     | number of running child processes to parent process 4020665: 1
[2026-02-08 09:23:28] 2026-02-08 14:22:25,286 | INFO     | maximum number of monitored processes: 6
[2026-02-08 09:23:28] 2026-02-08 14:22:25,286 | INFO     | aborting job monitoring since job object (job id=6994940266) has expired
[2026-02-08 09:23:28] 2026-02-08 14:22:25,764 | INFO     | process IDs to be killed: [4020665] (in reverse order)
[2026-02-08 09:23:28] 2026-02-08 14:22:26,026 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 09:23:28] 2026-02-08 14:22:26,026 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 09:23:28] 2026-02-08 14:22:26,052 | INFO     | did not find any defunct processes belonging to 4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:26,077 | INFO     | did not find any defunct processes belonging to 4020665
[2026-02-08 09:23:28] 2026-02-08 14:22:26,078 | INFO     | ready for new job
[2026-02-08 09:23:28] 2026-02-08 14:22:26,078 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 09:23:28] 2026-02-08 14:22:26,083 | INFO     | **************************************
[2026-02-08 09:23:28] 2026-02-08 14:22:26,084 | INFO     | ***  PanDA Pilot version 3.11.3.9  ***
[2026-02-08 09:23:28] 2026-02-08 14:22:26,084 | INFO     | **************************************
[2026-02-08 09:23:28] 2026-02-08 14:22:26,084 | INFO     | 
[2026-02-08 09:23:28] 2026-02-08 14:22:26,088 | INFO     | architecture information:
[2026-02-08 09:23:28] 2026-02-08 14:22:26,099 | INFO     | executing command: cat /etc/os-release
[2026-02-08 09:23:28] 2026-02-08 14:22:26,202 | INFO     | cat /etc/os-release:
[2026-02-08 09:23:28] NAME="CentOS Linux"
[2026-02-08 09:23:28] VERSION="7 (Core)"
[2026-02-08 09:23:28] ID="centos"
[2026-02-08 09:23:28] ID_LIKE="rhel fedora"
[2026-02-08 09:23:28] VERSION_ID="7"
[2026-02-08 09:23:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 09:23:28] ANSI_COLOR="0;31"
[2026-02-08 09:23:28] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 09:23:28] HOME_URL="https://www.centos.org/"
[2026-02-08 09:23:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 09:23:28] 
[2026-02-08 09:23:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 09:23:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 09:23:28] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 09:23:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 09:23:28] 
[2026-02-08 09:23:28] 2026-02-08 14:22:26,202 | INFO     | **************************************
[2026-02-08 09:23:28] 2026-02-08 14:22:26,706 | INFO     | executing command: df -mP /tmp/boinchome/slots/7
[2026-02-08 09:23:28] 2026-02-08 14:22:26,759 | INFO     | sufficient remaining disk space (166528548864 B)
[2026-02-08 09:23:28] 2026-02-08 14:22:26,759 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 09:23:28] 2026-02-08 14:22:26,759 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 09:23:28] 2026-02-08 14:22:26,759 | INFO     | update_server=False
[2026-02-08 09:23:28] 2026-02-08 14:22:26,759 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 09:23:28] 2026-02-08 14:22:26,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:23:28] 2026-02-08 14:22:26,760 | INFO     | aborting loop
[2026-02-08 09:23:28] 2026-02-08 14:22:27,559 | INFO     | all data control threads have been joined
[2026-02-08 09:23:28] 2026-02-08 14:22:27,766 | INFO     | [job] retrieve thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:27,772 | INFO     | [job] job monitor thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:27,802 | INFO     | [payload] validate_post thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:27,822 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:27,825 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:27,905 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 09:23:28] 2026-02-08 14:22:28,023 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 09:23:28] 2026-02-08 14:22:28,052 | INFO     | all payload control threads have been joined
[2026-02-08 09:23:28] 2026-02-08 14:22:28,081 | INFO     | [data] copytool_in thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:28,084 | INFO     | [job] validate thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:28,238 | INFO     | all job control threads have been joined
[2026-02-08 09:23:28] 2026-02-08 14:22:28,510 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 09:23:28] 2026-02-08 14:22:28,565 | INFO     | [data] control thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:28,612 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:28,632 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:28,911 | INFO     | [job] queue monitor thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:29,058 | INFO     | [payload] control thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:29,246 | INFO     | [job] control thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:29,335 | INFO     | [payload] failed_post thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:30,030 | INFO     | [data] copytool_out thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:32,520 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 09:23:28] 2026-02-08 14:22:55,804 | INFO     | PID=4003135 has CPU usage=7.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-08 09:23:28] 2026-02-08 14:22:55,805 | INFO     | .. there are 40 such processes running
[2026-02-08 09:23:28] 2026-02-08 14:22:55,805 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 09:23:28] 2026-02-08 14:22:55,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 09:23:28] 2026-02-08 14:22:55,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 09:23:28] 2026-02-08 14:23:20,399 | INFO     | [monitor] cgroup control has ended
[2026-02-08 09:23:28] 2026-02-08 14:23:21,922 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140071321188160)>', '<ExcThread(monitor, started 140071039940352)>']
[2026-02-08 09:23:28] 2026-02-08 14:23:21,987 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 09:23:28] 2026-02-08 14:23:21,988 | INFO     | [monitor] control thread has ended
[2026-02-08 09:23:28] 2026-02-08 14:23:26,948 | INFO     | all workflow threads have been joined
[2026-02-08 09:23:28] 2026-02-08 14:23:26,949 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 09:23:28] 2026-02-08 14:23:26,949 | INFO     | traces error code: 0
[2026-02-08 09:23:28] 2026-02-08 14:23:26,949 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 09:23:28] 2026-02-08 14:23:27,307 [wrapper] ==== pilot stdout END ====
[2026-02-08 09:23:28] 2026-02-08 14:23:27,346 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 09:23:28] 2026-02-08 14:23:27,364 [wrapper] pilotpid: 4003135
[2026-02-08 09:23:28] 2026-02-08 14:23:27,415 [wrapper] Pilot exit status: 0
[2026-02-08 09:23:28] 2026-02-08 14:23:27,510 [wrapper] pandaids: 6994940266
[2026-02-08 09:23:28] 2026-02-08 14:23:27,752 [wrapper] cleanup supervisor_pilot  532009 4003136
[2026-02-08 09:23:28] 2026-02-08 14:23:27,790 [wrapper] Test setup, not cleaning
[2026-02-08 09:23:28] 2026-02-08 14:23:27,802 [wrapper] apfmon messages muted
[2026-02-08 09:23:28] 2026-02-08 14:23:27,829 [wrapper] ==== wrapper stdout END ====
[2026-02-08 09:23:28] 2026-02-08 14:23:27,842 [wrapper] ==== wrapper stderr END ====
[2026-02-08 09:23:28]  *** Error codes and diagnostics ***
[2026-02-08 09:23:28]     "exeErrorCode": 0,
[2026-02-08 09:23:28]     "exeErrorDiag": "",
[2026-02-08 09:23:28]     "pilotErrorCode": 0,
[2026-02-08 09:23:28]     "pilotErrorDiag": "",
[2026-02-08 09:23:28]  *** Listing of results directory ***
[2026-02-08 09:23:28] total 678124
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas    584422 Jan 31 18:05 pilot3.tar.gz
[2026-02-08 09:23:28] -rwx------. 1 boincer umatlas     36322 Jan 31 18:05 runpilot2-wrapper.sh
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas      5111 Jan 31 18:05 queuedata.json
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas       100 Feb  8 07:48 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 09:23:28] -rwxr-xr-x. 1 boincer umatlas      7986 Feb  8 07:48 run_atlas
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas       105 Feb  8 07:48 job.xml
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas 505141939 Feb  8 07:48 EVNT.48317929._000184.pool.root.1
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 07:48 start_atlas.sh
[2026-02-08 09:23:28] drwxrwx--x. 2 boincer umatlas      4096 Feb  8 07:48 shared
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas    597763 Feb  8 07:48 input.tar.gz
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas         0 Feb  8 07:48 boinc_lockfile
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas      2510 Feb  8 07:48 pandaJob.out
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas        57 Feb  8 07:48 setup.sh.local
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas   1009518 Feb  8 07:49 agis_schedconf.cvmfs.json
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas   1513088 Feb  8 07:49 agis_ddmendpoints.agis.ALL.json
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas       432 Feb  8 07:50 workernode_map.json
[2026-02-08 09:23:28] drwx------. 5 boincer umatlas      4096 Feb  8 07:50 pilot3
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas 183136865 Feb  8 09:21 HITS.48317931._010217.pool.root.1
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas       530 Feb  8 09:21 boinc_task_state.xml
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas      7185 Feb  8 09:21 init_data.xml
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas      1049 Feb  8 09:22 memory_monitor_summary.json
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas        95 Feb  8 09:22 pilot_heartbeat.json
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas    341759 Feb  8 09:22 log.48317931._010217.job.log.tgz.1
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas      6371 Feb  8 09:22 heartbeat.json
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas      8192 Feb  8 09:23 boinc_mmap_file
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas        27 Feb  8 09:23 wrapper_checkpoint.txt
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas      4821 Feb  8 09:23 pilotlog.txt
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas    743047 Feb  8 09:23 log.48317931._010217.job.log.1
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas       357 Feb  8 09:23 output.list
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas       620 Feb  8 09:23 runtime_log
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas   1105920 Feb  8 09:23 result.tar.gz
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas       657 Feb  8 09:23 zzpNDmMDZ68n9Rq4apOajLDm4fhM0noT9bVooX4SDmIUOKDm2YoGcn.diag
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas      9341 Feb  8 09:23 runtime_log.err
[2026-02-08 09:23:28] -rw-r--r--. 1 boincer umatlas     21685 Feb  8 09:23 stderr.txt
[2026-02-08 09:23:28] HITS file was successfully produced:
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas 183136865 Feb  8 09:21 shared/HITS.pool.root.1
[2026-02-08 09:23:28]  *** Contents of shared directory: ***
[2026-02-08 09:23:28] total 673840
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas 505141939 Feb  8 07:48 ATLAS.root_0
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas     15845 Feb  8 07:48 start_atlas.sh
[2026-02-08 09:23:28] -rw-r--r--. 2 boincer umatlas    597763 Feb  8 07:48 input.tar.gz
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas 183136865 Feb  8 09:21 HITS.pool.root.1
[2026-02-08 09:23:28] -rw-------. 1 boincer umatlas   1105920 Feb  8 09:23 result.tar.gz
09:23:30 (3995614): run_atlas exited; CPU time 23670.045165
09:23:30 (3995614): called boinc_finish(0)

</stderr_txt>
]]>

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