Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
01:14:08 (3191341): wrapper (7.7.26015): starting
01:14:08 (3191341): wrapper: running run_atlas (--nthreads 3)
[2026-02-09 01:14:08] Arguments: --nthreads 3
[2026-02-09 01:14:08] Threads: 3
[2026-02-09 01:14:08] Checking for CVMFS
[2026-02-09 01:14:08] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 01:14:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 01:14:09] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 01:14:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 01:14:09] 2.9.2.0 2664365 3801 69052 156038 3 49 19750935 36864001 0 130560 0 1411946 99.980 141506 15987 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 01:14:09] CVMFS is ok
[2026-02-09 01:14:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 01:14:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 01:14:09] Further information can be found at the LHC@home message board.
[2026-02-09 01:14:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 01:14:09] Checking for apptainer binary...
[2026-02-09 01:14:09] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 01:14:09] Running /usr/bin/apptainer --version
[2026-02-09 01:14:09] apptainer version 1.4.1-1.1
[2026-02-09 01:14:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 01:14:09] atlasA221b
[2026-02-09 01:14:09] apptainer works
[2026-02-09 01:14:09] Set ATHENA_PROC_NUMBER=3
[2026-02-09 01:14:09] Set ATHENA_CORE_NUMBER=3
[2026-02-09 01:14:09] Starting ATLAS job with PandaID=7003945779
[2026-02-09 01:14:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 02:59:49]  *** The last 200 lines of the pilot log: ***
[2026-02-09 02:59:49] 2026-02-09 01:59:17,162 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2026-02-09 02:59:49] 2026-02-09 01:59:17,162 | INFO     | queue messages had 0 job(s) [purged]
[2026-02-09 02:59:49] 2026-02-09 01:59:17,162 | INFO     | job 7003945779 has completed (purged errors)
[2026-02-09 02:59:49] 2026-02-09 01:59:17,162 | INFO     | overall cleanup function is called
[2026-02-09 02:59:49] 2026-02-09 01:59:18,169 | INFO     | --- collectZombieJob: --- 10, [3199823]
[2026-02-09 02:59:49] 2026-02-09 01:59:18,169 | INFO     | zombie collector waiting for pid 3199823
[2026-02-09 02:59:49] 2026-02-09 01:59:18,169 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 02:59:49] 2026-02-09 01:59:18,169 | INFO     | collected zombie processes
[2026-02-09 02:59:49] 2026-02-09 01:59:18,170 | INFO     | will attempt to kill all subprocesses of pid=3199823
[2026-02-09 02:59:49] 2026-02-09 01:59:18,228 | INFO     | process IDs to be killed: [3199823] (in reverse order)
[2026-02-09 02:59:49] 2026-02-09 01:59:18,260 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 02:59:49] 2026-02-09 01:59:18,260 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 02:59:49] 2026-02-09 01:59:18,261 | INFO     | did not find any defunct processes belonging to 3199823
[2026-02-09 02:59:49] 2026-02-09 01:59:18,263 | INFO     | did not find any defunct processes belonging to 3199823
[2026-02-09 02:59:49] 2026-02-09 01:59:18,263 | INFO     | ready for new job
[2026-02-09 02:59:49] 2026-02-09 01:59:18,263 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | **************************************
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | **************************************
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | 
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | architecture information:
[2026-02-09 02:59:49] 2026-02-09 01:59:18,264 | INFO     | executing command: cat /etc/os-release
[2026-02-09 02:59:49] 2026-02-09 01:59:18,274 | INFO     | cat /etc/os-release:
[2026-02-09 02:59:49] NAME="CentOS Linux"
[2026-02-09 02:59:49] VERSION="7 (Core)"
[2026-02-09 02:59:49] ID="centos"
[2026-02-09 02:59:49] ID_LIKE="rhel fedora"
[2026-02-09 02:59:49] VERSION_ID="7"
[2026-02-09 02:59:49] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 02:59:49] ANSI_COLOR="0;31"
[2026-02-09 02:59:49] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 02:59:49] HOME_URL="https://www.centos.org/"
[2026-02-09 02:59:49] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 02:59:49] 
[2026-02-09 02:59:49] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 02:59:49] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 02:59:49] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 02:59:49] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 02:59:49] 
[2026-02-09 02:59:49] 2026-02-09 01:59:18,274 | INFO     | **************************************
[2026-02-09 02:59:49] 2026-02-09 01:59:18,609 [wrapper] supervise_pilot (15 min periods counter: 8)
[2026-02-09 02:59:49] 2026-02-09 01:59:18,777 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 02:59:49] 2026-02-09 01:59:18,814 | INFO     | sufficient remaining disk space (337701240832 B)
[2026-02-09 02:59:49] 2026-02-09 01:59:18,815 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 02:59:49] 2026-02-09 01:59:18,815 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 02:59:49] 2026-02-09 01:59:18,816 | INFO     | update_server=False
[2026-02-09 02:59:49] 2026-02-09 01:59:18,816 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 02:59:49] 2026-02-09 01:59:18,816 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 02:59:49] 2026-02-09 01:59:18,817 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 02:59:49] 2026-02-09 01:59:18,817 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 02:59:49] 2026-02-09 01:59:18,818 | INFO     | aborting loop
[2026-02-09 02:59:49] 2026-02-09 01:59:19,172 | INFO     | all job control threads have been joined
[2026-02-09 02:59:49] 2026-02-09 01:59:19,466 | INFO     | all payload control threads have been joined
[2026-02-09 02:59:49] 2026-02-09 01:59:19,654 | INFO     | all data control threads have been joined
[2026-02-09 02:59:49] 2026-02-09 01:59:19,821 | INFO     | [job] retrieve thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:19,822 | INFO     | [job] queue monitor thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:19,823 | INFO     | [job] job monitor thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,008 | INFO     | [payload] failed_post thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,177 | INFO     | [job] control thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,472 | INFO     | [payload] control thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,485 | INFO     | [job] validate thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,496 | INFO     | [payload] validate_post thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,640 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,658 | INFO     | [data] copytool_in thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,659 | INFO     | [data] control thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,713 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:20,822 | INFO     | [data] copytool_out thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:21,189 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 02:59:49] 2026-02-09 01:59:21,219 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:25,196 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:29,292 | INFO     | job.realtimelogging is not enabled
[2026-02-09 02:59:49] 2026-02-09 01:59:30,298 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 02:59:49] 2026-02-09 01:59:32,136 | INFO     | [monitor] cgroup control has ended
[2026-02-09 02:59:49] 2026-02-09 01:59:32,336 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140356763338560)>', '<ExcThread(monitor, started 140356276434688)>']
[2026-02-09 02:59:49] 2026-02-09 01:59:37,362 | INFO     | all workflow threads have been joined
[2026-02-09 02:59:49] 2026-02-09 01:59:37,362 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 02:59:49] 2026-02-09 01:59:37,363 | INFO     | traces error code: 0
[2026-02-09 02:59:49] 2026-02-09 01:59:37,363 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | INFO     | PID=3195393 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 02:59:49] 2026-02-09 01:59:49,503 | INFO     | [monitor] control thread has ended
[2026-02-09 02:59:49] 2026-02-09 01:59:49,549 [wrapper] ==== pilot stdout END ====
[2026-02-09 02:59:49] 2026-02-09 01:59:49,551 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 02:59:49] 2026-02-09 01:59:49,554 [wrapper] pilotpid: 3195393
[2026-02-09 02:59:49] 2026-02-09 01:59:49,556 [wrapper] Pilot exit status: 0
[2026-02-09 02:59:49] 2026-02-09 01:59:49,564 [wrapper] pandaids: 7003945779
[2026-02-09 02:59:49] 2026-02-09 01:59:49,583 [wrapper] cleanup supervisor_pilot 3206135 3195394
[2026-02-09 02:59:49] 2026-02-09 01:59:49,586 [wrapper] Test setup, not cleaning
[2026-02-09 02:59:49] 2026-02-09 01:59:49,589 [wrapper] apfmon messages muted
[2026-02-09 02:59:49] 2026-02-09 01:59:49,592 [wrapper] ==== wrapper stdout END ====
[2026-02-09 02:59:49] 2026-02-09 01:59:49,594 [wrapper] ==== wrapper stderr END ====
[2026-02-09 02:59:49]  *** Error codes and diagnostics ***
[2026-02-09 02:59:49]     "exeErrorCode": 0,
[2026-02-09 02:59:49]     "exeErrorDiag": "",
[2026-02-09 02:59:49]     "pilotErrorCode": 0,
[2026-02-09 02:59:49]     "pilotErrorDiag": "",
[2026-02-09 02:59:49]  *** Listing of results directory ***
[2026-02-09 02:59:49] total 673460
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc    584627 Feb  8 06:10 pilot3.tar.gz
[2026-02-09 02:59:49] -rwx------ 1 boinc boinc     36322 Feb  8 06:13 runpilot2-wrapper.sh
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc      5111 Feb  8 06:15 queuedata.json
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc       100 Feb  9 01:14 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 02:59:49] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 01:14 run_atlas
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc       105 Feb  9 01:14 job.xml
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc 493338506 Feb  9 01:14 EVNT.48318016._000065.pool.root.1
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc    597947 Feb  9 01:14 input.tar.gz
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc     15845 Feb  9 01:14 start_atlas.sh
[2026-02-09 02:59:49] drwxrwx--x 2 boinc boinc      4096 Feb  9 01:14 shared
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc         0 Feb  9 01:14 boinc_setup_complete
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc      6199 Feb  9 01:14 init_data.xml
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc         0 Feb  9 01:14 boinc_lockfile
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc      2521 Feb  9 01:14 pandaJob.out
[2026-02-09 02:59:49] -rw------- 1 boinc boinc   1009504 Feb  9 01:14 agis_schedconf.cvmfs.json
[2026-02-09 02:59:49] -rw------- 1 boinc boinc   1513088 Feb  9 01:14 agis_ddmendpoints.agis.ALL.json
[2026-02-09 02:59:49] -rw------- 1 boinc boinc       422 Feb  9 01:14 workernode_map.json
[2026-02-09 02:59:49] drwx------ 5 boinc boinc      4096 Feb  9 01:14 pilot3
[2026-02-09 02:59:49] -rw------- 1 boinc boinc 189941992 Feb  9 02:58 HITS.48318018._003319.pool.root.1
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc       530 Feb  9 02:58 boinc_task_state.xml
[2026-02-09 02:59:49] -rw------- 1 boinc boinc        95 Feb  9 02:58 pilot_heartbeat.json
[2026-02-09 02:59:49] -rw------- 1 boinc boinc      1024 Feb  9 02:59 memory_monitor_summary.json
[2026-02-09 02:59:49] -rw------- 1 boinc boinc    299977 Feb  9 02:59 log.48318018._003319.job.log.tgz.1
[2026-02-09 02:59:49] -rw------- 1 boinc boinc      6322 Feb  9 02:59 heartbeat.json
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc      8192 Feb  9 02:59 boinc_mmap_file
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc        27 Feb  9 02:59 wrapper_checkpoint.txt
[2026-02-09 02:59:49] -rw------- 1 boinc boinc       747 Feb  9 02:59 pilotlog.txt
[2026-02-09 02:59:49] -rw------- 1 boinc boinc    908880 Feb  9 02:59 log.48318018._003319.job.log.1
[2026-02-09 02:59:49] -rw------- 1 boinc boinc       357 Feb  9 02:59 output.list
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc       620 Feb  9 02:59 runtime_log
[2026-02-09 02:59:49] -rw------- 1 boinc boinc   1228800 Feb  9 02:59 result.tar.gz
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc      8916 Feb  9 02:59 runtime_log.err
[2026-02-09 02:59:49] -rw------- 1 boinc boinc       661 Feb  9 02:59 10nLDmHIC98n9Rq4apOajLDm4fhM0noT9bVooX4SDmQXcKDmD4AHUo.diag
[2026-02-09 02:59:49] -rw-r--r-- 1 boinc boinc     11211 Feb  9 02:59 stderr.txt
[2026-02-09 02:59:49] HITS file was successfully produced:
[2026-02-09 02:59:49] -rw------- 1 boinc boinc 189941992 Feb  9 02:58 shared/HITS.pool.root.1
[2026-02-09 02:59:49]  *** Contents of shared directory: ***
[2026-02-09 02:59:49] total 669076
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc 493338506 Feb  9 01:14 ATLAS.root_0
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc    597947 Feb  9 01:14 input.tar.gz
[2026-02-09 02:59:49] -rw-r--r-- 2 boinc boinc     15845 Feb  9 01:14 start_atlas.sh
[2026-02-09 02:59:49] -rw------- 1 boinc boinc 189941992 Feb  9 02:58 HITS.pool.root.1
[2026-02-09 02:59:49] -rw------- 1 boinc boinc   1228800 Feb  9 02:59 result.tar.gz
02:59:50 (3191341): run_atlas exited; CPU time 18191.952044
02:59:50 (3191341): called boinc_finish(0)

</stderr_txt>
]]>

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