Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
22:50:17 (3782074): wrapper (7.7.26015): starting
22:50:17 (3782074): wrapper: running run_atlas (--nthreads 4)
[2026-02-08 22:50:17] Arguments: --nthreads 4
[2026-02-08 22:50:17] Threads: 4
[2026-02-08 22:50:17] Checking for CVMFS
[2026-02-08 22:50:17] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-08 22:50:17] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-08 22:50:17] Running cvmfs_config stat atlas.cern.ch
[2026-02-08 22:50:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-08 22:50:18] 2.9.2.0 3088581 3680 90452 156033 2 50 36428302 36864000 0 130560 0 1989452 99.987 137685 14082 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-08 22:50:18] CVMFS is ok
[2026-02-08 22:50:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-08 22:50:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-08 22:50:18] Further information can be found at the LHC@home message board.
[2026-02-08 22:50:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-08 22:50:18] Checking for apptainer binary...
[2026-02-08 22:50:18] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-08 22:50:18] Running /usr/bin/apptainer --version
[2026-02-08 22:50:18] apptainer version 1.4.1-1.1
[2026-02-08 22:50:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-08 22:50:18] thA315b
[2026-02-08 22:50:18] apptainer works
[2026-02-08 22:50:18] Set ATHENA_PROC_NUMBER=4
[2026-02-08 22:50:18] Set ATHENA_CORE_NUMBER=4
[2026-02-08 22:50:18] Starting ATLAS job with PandaID=7003988565
[2026-02-08 22:50:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-08 23:57:39]  *** The last 200 lines of the pilot log: ***
[2026-02-08 23:57:39] 2026-02-08 22:57:21,030 | INFO     | process IDs to be killed: [3790696] (in reverse order)
[2026-02-08 23:57:39] 2026-02-08 22:57:21,057 | WARNING  | found no corresponding commands to process id(s)
[2026-02-08 23:57:39] 2026-02-08 22:57:21,057 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-08 23:57:39] 2026-02-08 22:57:21,059 | INFO     | did not find any defunct processes belonging to 3790696
[2026-02-08 23:57:39] 2026-02-08 22:57:21,060 | INFO     | did not find any defunct processes belonging to 3790696
[2026-02-08 23:57:39] 2026-02-08 22:57:21,060 | INFO     | ready for new job
[2026-02-08 23:57:39] 2026-02-08 22:57:21,060 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | **************************************
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | **************************************
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | 
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | architecture information:
[2026-02-08 23:57:39] 2026-02-08 22:57:21,061 | INFO     | executing command: cat /etc/os-release
[2026-02-08 23:57:39] 2026-02-08 22:57:21,072 | INFO     | cat /etc/os-release:
[2026-02-08 23:57:39] NAME="CentOS Linux"
[2026-02-08 23:57:39] VERSION="7 (Core)"
[2026-02-08 23:57:39] ID="centos"
[2026-02-08 23:57:39] ID_LIKE="rhel fedora"
[2026-02-08 23:57:39] VERSION_ID="7"
[2026-02-08 23:57:39] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-08 23:57:39] ANSI_COLOR="0;31"
[2026-02-08 23:57:39] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-08 23:57:39] HOME_URL="https://www.centos.org/"
[2026-02-08 23:57:39] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-08 23:57:39] 
[2026-02-08 23:57:39] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-08 23:57:39] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-08 23:57:39] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-08 23:57:39] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-08 23:57:39] 
[2026-02-08 23:57:39] 2026-02-08 22:57:21,072 | INFO     | **************************************
[2026-02-08 23:57:39] 2026-02-08 22:57:21,575 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-08 23:57:39] 2026-02-08 22:57:21,588 | INFO     | sufficient remaining disk space (318780735488 B)
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | INFO     | current server update state: UPDATING_FINAL
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | INFO     | update_server=False
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | INFO     | found 0 job(s) in 20 queues
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-08 23:57:39] 2026-02-08 22:57:21,589 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-08 23:57:39] 2026-02-08 22:57:21,860 | INFO     | all data control threads have been joined
[2026-02-08 23:57:39] 2026-02-08 22:57:22,009 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2026-02-08 23:57:39] 2026-02-08 22:57:22,009 | WARNING  | cannot recover job monitoring - aborting pilot
[2026-02-08 23:57:39] 2026-02-08 22:57:22,009 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-08 23:57:39] 2026-02-08 22:57:22,010 | INFO     | will abort loop
[2026-02-08 23:57:39] 2026-02-08 22:57:22,595 | INFO     | [job] retrieve thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:22,595 | INFO     | [job] queue monitor thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:22,837 | INFO     | all payload control threads have been joined
[2026-02-08 23:57:39] 2026-02-08 22:57:22,866 | INFO     | [data] control thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:22,989 | INFO     | all job control threads have been joined
[2026-02-08 23:57:39] 2026-02-08 22:57:23,012 | INFO     | [job] job monitor thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,064 | INFO     | [job] validate thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,162 | INFO     | [job] create_data_payload thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,162 | INFO     | [payload] validate_pre thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,229 | INFO     | [payload] execute_payloads thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,268 | INFO     | [payload] failed_post thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,349 | INFO     | [data] copytool_in thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,596 | INFO     | [data] copytool_out thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,800 | INFO     | [payload] validate_post thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,843 | INFO     | [payload] control thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:23,994 | INFO     | [job] control thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:24,158 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-08 23:57:39] 2026-02-08 22:57:28,164 | INFO     | [data] queue_monitor thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:32,485 | INFO     | job.realtimelogging is not enabled
[2026-02-08 23:57:39] 2026-02-08 22:57:33,491 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-08 23:57:39] 2026-02-08 22:57:33,725 | INFO     | [monitor] cgroup control has ended
[2026-02-08 23:57:39] 2026-02-08 22:57:34,746 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140057653712704)>', '<ExcThread(monitor, started 140056777967360)>']
[2026-02-08 23:57:39] 2026-02-08 22:57:35,665 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-08 23:57:39] 2026-02-08 22:57:35,665 | INFO     | [monitor] control thread has ended
[2026-02-08 23:57:39] 2026-02-08 22:57:39,771 | INFO     | all workflow threads have been joined
[2026-02-08 23:57:39] 2026-02-08 22:57:39,772 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-08 23:57:39] 2026-02-08 22:57:39,772 | INFO     | traces error code: 0
[2026-02-08 23:57:39] 2026-02-08 22:57:39,772 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-08 23:57:39] 2026-02-08 22:57:39,825 [wrapper] ==== pilot stdout END ====
[2026-02-08 23:57:39] 2026-02-08 22:57:39,828 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-08 23:57:39] 2026-02-08 22:57:39,830 [wrapper] pilotpid: 3786191
[2026-02-08 23:57:39] 2026-02-08 22:57:39,833 [wrapper] Pilot exit status: 0
[2026-02-08 23:57:39] 2026-02-08 22:57:39,841 [wrapper] pandaids: 7003988565
[2026-02-08 23:57:39] 2026-02-08 22:57:39,859 [wrapper] cleanup supervisor_pilot 3795568 3786192
[2026-02-08 23:57:39] 2026-02-08 22:57:39,861 [wrapper] Test setup, not cleaning
[2026-02-08 23:57:39] 2026-02-08 22:57:39,864 [wrapper] apfmon messages muted
[2026-02-08 23:57:39] 2026-02-08 22:57:39,866 [wrapper] ==== wrapper stdout END ====
[2026-02-08 23:57:39] 2026-02-08 22:57:39,869 [wrapper] ==== wrapper stderr END ====
[2026-02-08 23:57:39]  *** Error codes and diagnostics ***
[2026-02-08 23:57:39]     "exeErrorCode": 0,
[2026-02-08 23:57:39]     "exeErrorDiag": "",
[2026-02-08 23:57:39]     "pilotErrorCode": 0,
[2026-02-08 23:57:39]     "pilotErrorDiag": "",
[2026-02-08 23:57:39]  *** Listing of results directory ***
[2026-02-08 23:57:39] total 674548
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc    584627 Feb  8 06:10 pilot3.tar.gz
[2026-02-08 23:57:39] -rwx------ 1 boinc boinc     36322 Feb  8 06:12 runpilot2-wrapper.sh
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc      5111 Feb  8 06:12 queuedata.json
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc       100 Feb  8 22:50 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-08 23:57:39] -rwxr-xr-x 1 boinc boinc      7986 Feb  8 22:50 run_atlas
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc       105 Feb  8 22:50 job.xml
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc 499251571 Feb  8 22:50 EVNT.48318040._000035.pool.root.1
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc    597966 Feb  8 22:50 input.tar.gz
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc     15845 Feb  8 22:50 start_atlas.sh
[2026-02-08 23:57:39] drwxrwx--x 2 boinc boinc      4096 Feb  8 22:50 shared
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc         0 Feb  8 22:50 boinc_setup_complete
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc      6443 Feb  8 22:50 init_data.xml
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc         0 Feb  8 22:50 boinc_lockfile
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc      2535 Feb  8 22:50 pandaJob.out
[2026-02-08 23:57:39] -rw------- 1 boinc boinc   1009496 Feb  8 22:50 agis_schedconf.cvmfs.json
[2026-02-08 23:57:39] -rw------- 1 boinc boinc   1513088 Feb  8 22:50 agis_ddmendpoints.agis.ALL.json
[2026-02-08 23:57:39] -rw------- 1 boinc boinc       423 Feb  8 22:50 workernode_map.json
[2026-02-08 23:57:39] drwx------ 5 boinc boinc      4096 Feb  8 22:50 pilot3
[2026-02-08 23:57:39] -rw------- 1 boinc boinc        95 Feb  8 23:56 pilot_heartbeat.json
[2026-02-08 23:57:39] -rw------- 1 boinc boinc 185774063 Feb  8 23:56 HITS.48318042._013008.pool.root.1
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc       530 Feb  8 23:57 boinc_task_state.xml
[2026-02-08 23:57:39] -rw------- 1 boinc boinc      1022 Feb  8 23:57 memory_monitor_summary.json
[2026-02-08 23:57:39] -rw------- 1 boinc boinc    292130 Feb  8 23:57 log.48318042._013008.job.log.tgz.1
[2026-02-08 23:57:39] -rw------- 1 boinc boinc      6302 Feb  8 23:57 heartbeat.json
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc      8192 Feb  8 23:57 boinc_mmap_file
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc        27 Feb  8 23:57 wrapper_checkpoint.txt
[2026-02-08 23:57:39] -rw------- 1 boinc boinc      4810 Feb  8 23:57 pilotlog.txt
[2026-02-08 23:57:39] -rw------- 1 boinc boinc    598010 Feb  8 23:57 log.48318042._013008.job.log.1
[2026-02-08 23:57:39] -rw------- 1 boinc boinc       357 Feb  8 23:57 output.list
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc       620 Feb  8 23:57 runtime_log
[2026-02-08 23:57:39] -rw------- 1 boinc boinc    911360 Feb  8 23:57 result.tar.gz
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc      8901 Feb  8 23:57 runtime_log.err
[2026-02-08 23:57:39] -rw------- 1 boinc boinc       658 Feb  8 23:57 Tl3NDmjGC98n9Rq4apOajLDm4fhM0noT9bVooX4SDmTScKDmKujfFo.diag
[2026-02-08 23:57:39] -rw-r--r-- 1 boinc boinc     10328 Feb  8 23:57 stderr.txt
[2026-02-08 23:57:39] HITS file was successfully produced:
[2026-02-08 23:57:39] -rw------- 1 boinc boinc 185774063 Feb  8 23:56 shared/HITS.pool.root.1
[2026-02-08 23:57:39]  *** Contents of shared directory: ***
[2026-02-08 23:57:39] total 670472
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc 499251571 Feb  8 22:50 ATLAS.root_0
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc    597966 Feb  8 22:50 input.tar.gz
[2026-02-08 23:57:39] -rw-r--r-- 2 boinc boinc     15845 Feb  8 22:50 start_atlas.sh
[2026-02-08 23:57:39] -rw------- 1 boinc boinc 185774063 Feb  8 23:56 HITS.pool.root.1
[2026-02-08 23:57:39] -rw------- 1 boinc boinc    911360 Feb  8 23:57 result.tar.gz
23:57:41 (3782074): run_atlas exited; CPU time 15049.170477
23:57:41 (3782074): called boinc_finish(0)

</stderr_txt>
]]>

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