Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:51:45 (723535): wrapper (7.7.26015): starting
04:51:45 (723535): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 04:51:45] Arguments: --nthreads 4
[2026-02-09 04:51:45] Threads: 4
[2026-02-09 04:51:45] Checking for CVMFS
[2026-02-09 04:51:45] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 04:51:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 04:51:46] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 04:51:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 04:51:46] 2.9.2.0 3021 4039 93532 156042 1 50 25001805 36864000 0 130560 0 2021332 99.987 148134 9654 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 04:51:46] CVMFS is ok
[2026-02-09 04:51:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 04:51:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 04:51:46] Further information can be found at the LHC@home message board.
[2026-02-09 04:51:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 04:51:46] Checking for apptainer binary...
[2026-02-09 04:51:46] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 04:51:46] Running /usr/bin/apptainer --version
[2026-02-09 04:51:46] apptainer version 1.4.1-1.1
[2026-02-09 04:51:46] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 04:51:46] thA334
[2026-02-09 04:51:46] apptainer works
[2026-02-09 04:51:46] Set ATHENA_PROC_NUMBER=4
[2026-02-09 04:51:46] Set ATHENA_CORE_NUMBER=4
[2026-02-09 04:51:46] Starting ATLAS job with PandaID=7004484421
[2026-02-09 04:51:46] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 06:01:08]  *** The last 200 lines of the pilot log: ***
[2026-02-09 06:01:08] 2026-02-09 05:00:55,260 | INFO     | --- collectZombieJob: --- 10, [732155]
[2026-02-09 06:01:08] 2026-02-09 05:00:55,260 | INFO     | zombie collector waiting for pid 732155
[2026-02-09 06:01:08] 2026-02-09 05:00:55,260 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2026-02-09 06:01:08] 2026-02-09 05:00:55,260 | INFO     | collected zombie processes
[2026-02-09 06:01:08] 2026-02-09 05:00:55,260 | INFO     | will attempt to kill all subprocesses of pid=732155
[2026-02-09 06:01:08] 2026-02-09 05:00:55,301 | INFO     | process IDs to be killed: [732155] (in reverse order)
[2026-02-09 06:01:08] 2026-02-09 05:00:55,332 | WARNING  | found no corresponding commands to process id(s)
[2026-02-09 06:01:08] 2026-02-09 05:00:55,332 | INFO     | Do not look for orphan processes in BOINC jobs
[2026-02-09 06:01:08] 2026-02-09 05:00:55,334 | INFO     | did not find any defunct processes belonging to 732155
[2026-02-09 06:01:08] 2026-02-09 05:00:55,335 | INFO     | did not find any defunct processes belonging to 732155
[2026-02-09 06:01:08] 2026-02-09 05:00:55,335 | INFO     | ready for new job
[2026-02-09 06:01:08] 2026-02-09 05:00:55,335 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | **************************************
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | **************************************
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | 
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | architecture information:
[2026-02-09 06:01:08] 2026-02-09 05:00:55,336 | INFO     | executing command: cat /etc/os-release
[2026-02-09 06:01:08] 2026-02-09 05:00:55,349 | INFO     | cat /etc/os-release:
[2026-02-09 06:01:08] NAME="CentOS Linux"
[2026-02-09 06:01:08] VERSION="7 (Core)"
[2026-02-09 06:01:08] ID="centos"
[2026-02-09 06:01:08] ID_LIKE="rhel fedora"
[2026-02-09 06:01:08] VERSION_ID="7"
[2026-02-09 06:01:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 06:01:08] ANSI_COLOR="0;31"
[2026-02-09 06:01:08] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 06:01:08] HOME_URL="https://www.centos.org/"
[2026-02-09 06:01:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 06:01:08] 
[2026-02-09 06:01:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 06:01:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 06:01:08] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 06:01:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 06:01:08] 
[2026-02-09 06:01:08] 2026-02-09 05:00:55,349 | INFO     | **************************************
[2026-02-09 06:01:08] 2026-02-09 05:00:55,852 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 06:01:08] 2026-02-09 05:00:55,870 | INFO     | sufficient remaining disk space (231172210688 B)
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | INFO     | update_server=False
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 06:01:08] 2026-02-09 05:00:55,871 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 06:01:08] 2026-02-09 05:00:55,872 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 06:01:08] 2026-02-09 05:00:55,872 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 06:01:08] 2026-02-09 05:00:55,872 | INFO     | aborting loop
[2026-02-09 06:01:08] 2026-02-09 05:00:55,872 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 06:01:08] 2026-02-09 05:00:55,872 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 06:01:08] 2026-02-09 05:00:56,182 | INFO     | all job control threads have been joined
[2026-02-09 06:01:08] 2026-02-09 05:00:56,656 | INFO     | all payload control threads have been joined
[2026-02-09 06:01:08] 2026-02-09 05:00:56,877 | INFO     | [job] retrieve thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:56,877 | INFO     | [job] queue monitor thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:56,878 | INFO     | [job] job monitor thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:56,914 | INFO     | all data control threads have been joined
[2026-02-09 06:01:08] 2026-02-09 05:00:57,167 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 06:01:08] 2026-02-09 05:00:57,188 | INFO     | [job] control thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,460 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,655 | INFO     | [job] validate thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,662 | INFO     | [payload] control thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,691 | INFO     | [payload] validate_post thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,764 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,920 | INFO     | [data] control thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:57,950 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:58,088 | INFO     | [data] copytool_in thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:58,311 | INFO     | [payload] failed_post thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:59,173 | INFO     | [data] copytool_out thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:00:59,549 | INFO     | job.realtimelogging is not enabled
[2026-02-09 06:01:08] 2026-02-09 05:00:59,879 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:01:00,554 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 06:01:08] 2026-02-09 05:01:01,893 | INFO     | [monitor] cgroup control has ended
[2026-02-09 06:01:08] 2026-02-09 05:01:03,720 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140075051583296)>', '<ExcThread(monitor, started 140073957836544)>']
[2026-02-09 06:01:08] 2026-02-09 05:01:03,915 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 06:01:08] 2026-02-09 05:01:03,915 | INFO     | [monitor] control thread has ended
[2026-02-09 06:01:08] 2026-02-09 05:01:08,745 | INFO     | all workflow threads have been joined
[2026-02-09 06:01:08] 2026-02-09 05:01:08,746 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 06:01:08] 2026-02-09 05:01:08,746 | INFO     | traces error code: 0
[2026-02-09 06:01:08] 2026-02-09 05:01:08,746 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 06:01:08] 2026-02-09 05:01:08,815 [wrapper] ==== pilot stdout END ====
[2026-02-09 06:01:08] 2026-02-09 05:01:08,819 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 06:01:08] 2026-02-09 05:01:08,822 [wrapper] pilotpid: 727646
[2026-02-09 06:01:08] 2026-02-09 05:01:08,826 [wrapper] Pilot exit status: 0
[2026-02-09 06:01:08] 2026-02-09 05:01:08,836 [wrapper] pandaids: 7004484421
[2026-02-09 06:01:08] 2026-02-09 05:01:08,856 [wrapper] cleanup supervisor_pilot  737209 727647
[2026-02-09 06:01:08] 2026-02-09 05:01:08,860 [wrapper] Test setup, not cleaning
[2026-02-09 06:01:08] 2026-02-09 05:01:08,863 [wrapper] apfmon messages muted
[2026-02-09 06:01:08] 2026-02-09 05:01:08,867 [wrapper] ==== wrapper stdout END ====
[2026-02-09 06:01:08] 2026-02-09 05:01:08,870 [wrapper] ==== wrapper stderr END ====
[2026-02-09 06:01:08]  *** Error codes and diagnostics ***
[2026-02-09 06:01:08]     "exeErrorCode": 0,
[2026-02-09 06:01:08]     "exeErrorDiag": "",
[2026-02-09 06:01:08]     "pilotErrorCode": 0,
[2026-02-09 06:01:08]     "pilotErrorDiag": "",
[2026-02-09 06:01:08]  *** Listing of results directory ***
[2026-02-09 06:01:08] total 677584
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc    584627 Feb  8 10:40 pilot3.tar.gz
[2026-02-09 06:01:08] -rwx------ 1 boinc boinc     36322 Feb  8 10:43 runpilot2-wrapper.sh
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc      5111 Feb  8 10:46 queuedata.json
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc       100 Feb  9 04:51 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 06:01:08] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 04:51 run_atlas
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc       105 Feb  9 04:51 job.xml
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc 501441261 Feb  9 04:51 EVNT.48442027._000112.pool.root.1
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc    597951 Feb  9 04:51 input.tar.gz
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc     15845 Feb  9 04:51 start_atlas.sh
[2026-02-09 06:01:08] drwxrwx--x 2 boinc boinc      4096 Feb  9 04:51 shared
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc         0 Feb  9 04:51 boinc_setup_complete
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc      6369 Feb  9 04:51 init_data.xml
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc         0 Feb  9 04:51 boinc_lockfile
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc      2528 Feb  9 04:51 pandaJob.out
[2026-02-09 06:01:08] -rw------- 1 boinc boinc   1009504 Feb  9 04:51 agis_schedconf.cvmfs.json
[2026-02-09 06:01:08] -rw------- 1 boinc boinc   1513088 Feb  9 04:51 agis_ddmendpoints.agis.ALL.json
[2026-02-09 06:01:08] -rw------- 1 boinc boinc       421 Feb  9 04:51 workernode_map.json
[2026-02-09 06:01:08] drwx------ 5 boinc boinc      4096 Feb  9 04:51 pilot3
[2026-02-09 06:01:08] -rw------- 1 boinc boinc        95 Feb  9 06:00 pilot_heartbeat.json
[2026-02-09 06:01:08] -rw------- 1 boinc boinc 186704882 Feb  9 06:00 HITS.48442031._006664.pool.root.1
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc       530 Feb  9 06:00 boinc_task_state.xml
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc        27 Feb  9 06:00 wrapper_checkpoint.txt
[2026-02-09 06:01:08] -rw------- 1 boinc boinc      1020 Feb  9 06:00 memory_monitor_summary.json
[2026-02-09 06:01:08] -rw------- 1 boinc boinc    270437 Feb  9 06:00 log.48442031._006664.job.log.tgz.1
[2026-02-09 06:01:08] -rw------- 1 boinc boinc      6305 Feb  9 06:00 heartbeat.json
[2026-02-09 06:01:08] -rw------- 1 boinc boinc      4624 Feb  9 06:01 pilotlog.txt
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc      8192 Feb  9 06:01 boinc_mmap_file
[2026-02-09 06:01:08] -rw------- 1 boinc boinc    614298 Feb  9 06:01 log.48442031._006664.job.log.1
[2026-02-09 06:01:08] -rw------- 1 boinc boinc       357 Feb  9 06:01 output.list
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc       620 Feb  9 06:01 runtime_log
[2026-02-09 06:01:08] -rw------- 1 boinc boinc    901120 Feb  9 06:01 result.tar.gz
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc      8896 Feb  9 06:01 runtime_log.err
[2026-02-09 06:01:08] -rw------- 1 boinc boinc       657 Feb  9 06:01 WYxLDmRVG98n9Rq4apOajLDm4fhM0noT9bVooX4SDmlycKDmZGmhim.diag
[2026-02-09 06:01:08] -rw-r--r-- 1 boinc boinc     10613 Feb  9 06:01 stderr.txt
[2026-02-09 06:01:08] HITS file was successfully produced:
[2026-02-09 06:01:08] -rw------- 1 boinc boinc 186704882 Feb  9 06:00 shared/HITS.pool.root.1
[2026-02-09 06:01:08]  *** Contents of shared directory: ***
[2026-02-09 06:01:08] total 673512
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc 501441261 Feb  9 04:51 ATLAS.root_0
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc    597951 Feb  9 04:51 input.tar.gz
[2026-02-09 06:01:08] -rw-r--r-- 2 boinc boinc     15845 Feb  9 04:51 start_atlas.sh
[2026-02-09 06:01:08] -rw------- 1 boinc boinc 186704882 Feb  9 06:00 HITS.pool.root.1
[2026-02-09 06:01:08] -rw------- 1 boinc boinc    901120 Feb  9 06:01 result.tar.gz
06:01:10 (723535): run_atlas exited; CPU time 15500.922490
06:01:10 (723535): called boinc_finish(0)

</stderr_txt>
]]>

©2026 CERN