Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
03:18:39 (709382): wrapper (7.7.26015): starting
03:18:39 (709382): wrapper: running run_atlas (--nthreads 4)
[2026-02-09 03:18:39] Arguments: --nthreads 4
[2026-02-09 03:18:39] Threads: 4
[2026-02-09 03:18:39] Checking for CVMFS
[2026-02-09 03:18:39] Probing /cvmfs/atlas.cern.ch... OK
[2026-02-09 03:18:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2026-02-09 03:18:39] Running cvmfs_config stat atlas.cern.ch
[2026-02-09 03:18:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2026-02-09 03:18:39] 2.9.2.0 3021 3946 93680 156040 2 49 24993274 36864000 0 130560 0 1981187 99.987 145446 9536 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2026-02-09 03:18:39] CVMFS is ok
[2026-02-09 03:18:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2026-02-09 03:18:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2026-02-09 03:18:39] Further information can be found at the LHC@home message board.
[2026-02-09 03:18:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2026-02-09 03:18:39] Checking for apptainer binary...
[2026-02-09 03:18:39] Using apptainer found in PATH at /usr/bin/apptainer
[2026-02-09 03:18:39] Running /usr/bin/apptainer --version
[2026-02-09 03:18:39] apptainer version 1.4.1-1.1
[2026-02-09 03:18:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2026-02-09 03:18:40] thA334
[2026-02-09 03:18:40] apptainer works
[2026-02-09 03:18:40] Set ATHENA_PROC_NUMBER=4
[2026-02-09 03:18:40] Set ATHENA_CORE_NUMBER=4
[2026-02-09 03:18:40] Starting ATLAS job with PandaID=7004483346
[2026-02-09 03:18:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2026-02-09 04:51:22]  *** The last 200 lines of the pilot log: ***
[2026-02-09 04:51:22] 2026-02-09 03:50:51,073 | INFO     | did not find any defunct processes belonging to 717987
[2026-02-09 04:51:22] 2026-02-09 03:50:51,074 | INFO     | did not find any defunct processes belonging to 717987
[2026-02-09 04:51:22] 2026-02-09 03:50:51,074 | INFO     | ready for new job
[2026-02-09 04:51:22] 2026-02-09 03:50:51,074 | INFO     | pilot has finished with previous job - re-establishing logging
[2026-02-09 04:51:22] 2026-02-09 03:50:51,075 | INFO     | **************************************
[2026-02-09 04:51:22] 2026-02-09 03:50:51,075 | INFO     | ***  PanDA Pilot version 3.11.4.1  ***
[2026-02-09 04:51:22] 2026-02-09 03:50:51,075 | INFO     | **************************************
[2026-02-09 04:51:22] 2026-02-09 03:50:51,075 | INFO     | 
[2026-02-09 04:51:22] 2026-02-09 03:50:51,076 | INFO     | architecture information:
[2026-02-09 04:51:22] 2026-02-09 03:50:51,076 | INFO     | executing command: cat /etc/os-release
[2026-02-09 04:51:22] 2026-02-09 03:50:51,089 | INFO     | cat /etc/os-release:
[2026-02-09 04:51:22] NAME="CentOS Linux"
[2026-02-09 04:51:22] VERSION="7 (Core)"
[2026-02-09 04:51:22] ID="centos"
[2026-02-09 04:51:22] ID_LIKE="rhel fedora"
[2026-02-09 04:51:22] VERSION_ID="7"
[2026-02-09 04:51:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2026-02-09 04:51:22] ANSI_COLOR="0;31"
[2026-02-09 04:51:22] CPE_NAME="cpe:/o:centos:centos:7"
[2026-02-09 04:51:22] HOME_URL="https://www.centos.org/"
[2026-02-09 04:51:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2026-02-09 04:51:22] 
[2026-02-09 04:51:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2026-02-09 04:51:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2026-02-09 04:51:22] REDHAT_SUPPORT_PRODUCT="centos"
[2026-02-09 04:51:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2026-02-09 04:51:22] 
[2026-02-09 04:51:22] 2026-02-09 03:50:51,089 | INFO     | **************************************
[2026-02-09 04:51:22] 2026-02-09 03:50:51,592 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2026-02-09 04:51:22] 2026-02-09 03:50:51,608 | INFO     | sufficient remaining disk space (230305038336 B)
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | INFO     | current server update state: UPDATING_FINAL
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | INFO     | update_server=False
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2026-02-09 04:51:22] 2026-02-09 03:50:51,609 | INFO     | aborting loop
[2026-02-09 04:51:22] 2026-02-09 03:50:52,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2026-02-09 04:51:22] 2026-02-09 03:50:52,374 | INFO     | all data control threads have been joined
[2026-02-09 04:51:22] 2026-02-09 03:50:52,375 | INFO     | all payload control threads have been joined
[2026-02-09 04:51:22] 2026-02-09 03:50:52,559 | INFO     | all job control threads have been joined
[2026-02-09 04:51:22] 2026-02-09 03:50:52,615 | INFO     | [job] queue monitor thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:52,615 | INFO     | [job] retrieve thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:52,615 | INFO     | [job] job monitor thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:52,693 | INFO     | [payload] run_realtimelog thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:52,721 | INFO     | [payload] validate_post thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,378 | INFO     | [payload] control thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,380 | INFO     | [data] control thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,541 | INFO     | [job] validate thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,565 | INFO     | [job] control thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,648 | INFO     | [job] create_data_payload thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,683 | INFO     | [payload] failed_post thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,886 | INFO     | [payload] validate_pre thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:53,984 | INFO     | [payload] execute_payloads thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:54,047 | INFO     | [data] copytool_in thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:54,244 | INFO     | [data] copytool_out thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:55,616 | INFO     | [data] queue_monitor thread has finished
[2026-02-09 04:51:22] 2026-02-09 03:50:56,894 | INFO     | [monitor] cgroup control has ended
[2026-02-09 04:51:22] 2026-02-09 03:50:58,392 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140155297986368)>', '<ExcThread(monitor, started 140154354255616)>']
[2026-02-09 04:51:22] 2026-02-09 03:51:03,418 | INFO     | all workflow threads have been joined
[2026-02-09 04:51:22] 2026-02-09 03:51:03,418 | INFO     | end of generic workflow (traces error code: 0)
[2026-02-09 04:51:22] 2026-02-09 03:51:03,418 | INFO     | traces error code: 0
[2026-02-09 04:51:22] 2026-02-09 03:51:03,418 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2026-02-09 04:51:22] 2026-02-09 03:51:21,902 | INFO     | PID=713483 has CPU usage=1.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2026-02-09 04:51:22] 2026-02-09 03:51:21,902 | INFO     | found 0 job(s) in 20 queues
[2026-02-09 04:51:22] 2026-02-09 03:51:21,902 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2026-02-09 04:51:22] 2026-02-09 03:51:21,903 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2026-02-09 04:51:22] 2026-02-09 03:51:21,903 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2026-02-09 04:51:22] 2026-02-09 03:51:21,903 | CRITICAL | thread 'MainThread' is not alive
[2026-02-09 04:51:22] 2026-02-09 03:51:21,903 | INFO     | [monitor] control thread has ended
[2026-02-09 04:51:22] 2026-02-09 03:51:21,967 [wrapper] ==== pilot stdout END ====
[2026-02-09 04:51:22] 2026-02-09 03:51:21,971 [wrapper] ==== wrapper stdout RESUME ====
[2026-02-09 04:51:22] 2026-02-09 03:51:21,975 [wrapper] pilotpid: 713483
[2026-02-09 04:51:22] 2026-02-09 03:51:21,978 [wrapper] Pilot exit status: 0
[2026-02-09 04:51:22] 2026-02-09 03:51:21,989 [wrapper] pandaids: 7004483346
[2026-02-09 04:51:22] 2026-02-09 03:51:22,010 [wrapper] cleanup supervisor_pilot  723313 713484
[2026-02-09 04:51:22] 2026-02-09 03:51:22,014 [wrapper] Test setup, not cleaning
[2026-02-09 04:51:22] 2026-02-09 03:51:22,017 [wrapper] apfmon messages muted
[2026-02-09 04:51:22] 2026-02-09 03:51:22,020 [wrapper] ==== wrapper stdout END ====
[2026-02-09 04:51:22] 2026-02-09 03:51:22,024 [wrapper] ==== wrapper stderr END ====
[2026-02-09 04:51:22]  *** Error codes and diagnostics ***
[2026-02-09 04:51:22]     "exeErrorCode": 0,
[2026-02-09 04:51:22]     "exeErrorDiag": "",
[2026-02-09 04:51:22]     "pilotErrorCode": 0,
[2026-02-09 04:51:22]     "pilotErrorDiag": "",
[2026-02-09 04:51:22]  *** Listing of results directory ***
[2026-02-09 04:51:22] total 888520
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc    584627 Feb  8 10:40 pilot3.tar.gz
[2026-02-09 04:51:22] -rwx------ 1 boinc boinc     36322 Feb  8 10:41 runpilot2-wrapper.sh
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      5111 Feb  8 10:41 queuedata.json
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc       100 Feb  9 03:18 wrapper_26015_x86_64-pc-linux-gnu
[2026-02-09 04:51:22] -rwxr-xr-x 1 boinc boinc      7986 Feb  9 03:18 run_atlas
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc       105 Feb  9 03:18 job.xml
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc 655919774 Feb  9 03:18 EVNT.48431111._000147.pool.root.1
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc    597958 Feb  9 03:18 input.tar.gz
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc     15845 Feb  9 03:18 start_atlas.sh
[2026-02-09 04:51:22] drwxrwx--x 2 boinc boinc      4096 Feb  9 03:18 shared
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc         0 Feb  9 03:18 boinc_setup_complete
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      6369 Feb  9 03:18 init_data.xml
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc         0 Feb  9 03:18 boinc_lockfile
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      2545 Feb  9 03:18 pandaJob.out
[2026-02-09 04:51:22] -rw------- 1 boinc boinc   1009504 Feb  9 03:18 agis_schedconf.cvmfs.json
[2026-02-09 04:51:22] -rw------- 1 boinc boinc   1513088 Feb  9 03:18 agis_ddmendpoints.agis.ALL.json
[2026-02-09 04:51:22] -rw------- 1 boinc boinc       419 Feb  9 03:18 workernode_map.json
[2026-02-09 04:51:22] drwx------ 5 boinc boinc      4096 Feb  9 03:18 pilot3
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc       530 Feb  9 04:50 boinc_task_state.xml
[2026-02-09 04:51:22] -rw------- 1 boinc boinc 247792207 Feb  9 04:50 HITS.48431113._007464.pool.root.1
[2026-02-09 04:51:22] -rw------- 1 boinc boinc      1026 Feb  9 04:50 memory_monitor_summary.json
[2026-02-09 04:51:22] -rw------- 1 boinc boinc    299528 Feb  9 04:50 log.48431113._007464.job.log.tgz.1
[2026-02-09 04:51:22] -rw------- 1 boinc boinc      6314 Feb  9 04:50 heartbeat.json
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      8192 Feb  9 04:50 boinc_mmap_file
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc        27 Feb  9 04:50 wrapper_checkpoint.txt
[2026-02-09 04:51:22] -rw------- 1 boinc boinc       816 Feb  9 04:51 pilotlog.txt
[2026-02-09 04:51:22] -rw------- 1 boinc boinc        95 Feb  9 04:51 pilot_heartbeat.json
[2026-02-09 04:51:22] -rw------- 1 boinc boinc    803237 Feb  9 04:51 log.48431113._007464.job.log.1
[2026-02-09 04:51:22] -rw------- 1 boinc boinc       357 Feb  9 04:51 output.list
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc       620 Feb  9 04:51 runtime_log
[2026-02-09 04:51:22] -rw------- 1 boinc boinc   1116160 Feb  9 04:51 result.tar.gz
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      8896 Feb  9 04:51 runtime_log.err
[2026-02-09 04:51:22] -rw------- 1 boinc boinc       657 Feb  9 04:51 nzZMDmGTG98n9Rq4apOajLDm4fhM0noT9bVooX4SDmXrcKDm7qwsdm.diag
[2026-02-09 04:51:22] -rw-r--r-- 1 boinc boinc      9835 Feb  9 04:51 stderr.txt
[2026-02-09 04:51:22] HITS file was successfully produced:
[2026-02-09 04:51:22] -rw------- 1 boinc boinc 247792207 Feb  9 04:50 shared/HITS.pool.root.1
[2026-02-09 04:51:22]  *** Contents of shared directory: ***
[2026-02-09 04:51:22] total 884236
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc 655919774 Feb  9 03:18 ATLAS.root_0
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc    597958 Feb  9 03:18 input.tar.gz
[2026-02-09 04:51:22] -rw-r--r-- 2 boinc boinc     15845 Feb  9 03:18 start_atlas.sh
[2026-02-09 04:51:22] -rw------- 1 boinc boinc 247792207 Feb  9 04:50 HITS.pool.root.1
[2026-02-09 04:51:22] -rw------- 1 boinc boinc   1116160 Feb  9 04:51 result.tar.gz
04:51:23 (709382): run_atlas exited; CPU time 20928.787503
04:51:23 (709382): called boinc_finish(0)

</stderr_txt>
]]>

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